HEADER MEMBRANE PROTEIN 29-JUN-12 4FVG TITLE SPFH DOMAIN OF MOUSE STOMATIN (CRYSTAL FORM 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STOMATIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN 7.2B, ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EPB7.2, EPB72, STOM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PHAGE RESISTANT ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS MIXED ALPHA-BETA FOLD, MEMBRANE SCAFFOLD, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BRAND,D.SCHWEFEL,O.DAUMKE REVDAT 3 13-SEP-23 4FVG 1 REMARK SEQADV LINK REVDAT 2 31-OCT-12 4FVG 1 JRNL REVDAT 1 15-AUG-12 4FVG 0 JRNL AUTH J.BRAND,E.S.SMITH,D.SCHWEFEL,L.LAPATSINA,K.POOLE, JRNL AUTH 2 D.OMERBASIC,A.KOZLENKOV,J.BEHLKE,G.R.LEWIN,O.DAUMKE JRNL TITL A STOMATIN DIMER MODULATES THE ACTIVITY OF ACID-SENSING ION JRNL TITL 2 CHANNELS. JRNL REF EMBO J. V. 31 3635 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22850675 JRNL DOI 10.1038/EMBOJ.2012.203 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 885 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1211 ; 1.986 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 5.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;36.951 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 155 ;12.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 662 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 568 ; 1.319 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 1.967 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 317 ; 3.120 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 281 ; 4.727 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1036 -11.2819 -7.4685 REMARK 3 T TENSOR REMARK 3 T11: 0.5641 T22: 0.4738 REMARK 3 T33: 0.3276 T12: 0.1557 REMARK 3 T13: -0.0542 T23: 0.1628 REMARK 3 L TENSOR REMARK 3 L11: 18.7587 L22: 27.2480 REMARK 3 L33: 17.5829 L12: -0.9348 REMARK 3 L13: -5.8167 L23: -1.8091 REMARK 3 S TENSOR REMARK 3 S11: 0.4215 S12: -1.4310 S13: 0.5682 REMARK 3 S21: 0.9470 S22: 0.1507 S23: 0.9238 REMARK 3 S31: -1.3186 S32: -0.3247 S33: -0.5721 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2363 -16.4881 -0.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1186 REMARK 3 T33: 0.1917 T12: -0.0142 REMARK 3 T13: -0.0567 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 11.0726 L22: 9.2225 REMARK 3 L33: 9.2200 L12: -5.2557 REMARK 3 L13: 4.1967 L23: -2.7957 REMARK 3 S TENSOR REMARK 3 S11: -0.1679 S12: 0.2595 S13: 0.8006 REMARK 3 S21: -0.0634 S22: 0.0725 S23: -0.4301 REMARK 3 S31: -0.5403 S32: 0.1044 S33: 0.0954 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6656 -27.0266 8.6505 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.1977 REMARK 3 T33: 0.1925 T12: 0.0201 REMARK 3 T13: -0.0480 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 6.6660 L22: 4.6064 REMARK 3 L33: 8.0756 L12: -2.4081 REMARK 3 L13: 2.5173 L23: -1.7431 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.1244 S13: -0.0194 REMARK 3 S21: 0.2022 S22: 0.0654 S23: 0.0582 REMARK 3 S31: -0.4298 S32: -0.2467 S33: -0.1695 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8489 -31.0631 5.0815 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.2671 REMARK 3 T33: 0.2964 T12: 0.0370 REMARK 3 T13: -0.0622 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 11.1431 L22: 0.5265 REMARK 3 L33: 5.6621 L12: 3.1972 REMARK 3 L13: 4.3443 L23: 1.5683 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: 0.2279 S13: -0.5352 REMARK 3 S21: 0.0846 S22: 0.0120 S23: -0.1445 REMARK 3 S31: 0.0077 S32: 0.3792 S33: -0.1841 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0080 -18.4959 -5.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2216 REMARK 3 T33: 0.1750 T12: 0.0585 REMARK 3 T13: -0.0893 T23: 0.1399 REMARK 3 L TENSOR REMARK 3 L11: 10.5918 L22: 6.7380 REMARK 3 L33: 8.3261 L12: -0.5425 REMARK 3 L13: 1.2296 L23: -0.6630 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: 0.4135 S13: 0.0200 REMARK 3 S21: -0.3671 S22: 0.0528 S23: 0.4319 REMARK 3 S31: -0.4862 S32: -0.4866 S33: -0.0970 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5221 -16.0714 4.7018 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.8209 REMARK 3 T33: 0.6870 T12: 0.1696 REMARK 3 T13: 0.0289 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 6.6795 L22: 0.2925 REMARK 3 L33: 31.7672 L12: -0.4320 REMARK 3 L13: 8.5787 L23: -4.3403 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: -0.5481 S13: 1.0002 REMARK 3 S21: 0.1236 S22: 0.0820 S23: 0.2449 REMARK 3 S31: 0.2304 S32: -2.7639 S33: -0.2136 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9626 -18.1417 5.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.1261 REMARK 3 T33: 0.1786 T12: 0.0685 REMARK 3 T13: -0.0205 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 7.5202 L22: 3.2140 REMARK 3 L33: 5.7810 L12: -0.8575 REMARK 3 L13: -0.3385 L23: 1.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: -0.1528 S13: 0.5343 REMARK 3 S21: 0.2660 S22: 0.1251 S23: 0.2928 REMARK 3 S31: -1.0094 S32: -0.3372 S33: -0.0716 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1131 -29.0704 5.7689 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1472 REMARK 3 T33: 0.1139 T12: 0.0086 REMARK 3 T13: -0.0538 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 9.1408 L22: 12.9006 REMARK 3 L33: 5.2521 L12: -2.7576 REMARK 3 L13: 0.2382 L23: -1.3069 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.1796 S13: -0.1598 REMARK 3 S21: 0.4374 S22: 0.0403 S23: -0.3302 REMARK 3 S31: -0.0116 S32: 0.1147 S33: -0.0531 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7157 -37.8467 1.5701 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.3908 REMARK 3 T33: 0.5032 T12: 0.0316 REMARK 3 T13: -0.1371 T23: -0.1042 REMARK 3 L TENSOR REMARK 3 L11: 1.6409 L22: 6.5001 REMARK 3 L33: 7.3847 L12: -1.3605 REMARK 3 L13: -3.7721 L23: 3.6728 REMARK 3 S TENSOR REMARK 3 S11: -0.2689 S12: 0.1310 S13: -0.1303 REMARK 3 S21: 0.1356 S22: 0.2175 S23: -0.3272 REMARK 3 S31: 0.4788 S32: -0.0616 S33: 0.0514 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8123 -34.2320 -6.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.3887 REMARK 3 T33: 0.5658 T12: -0.0099 REMARK 3 T13: 0.0575 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 14.3606 L22: 2.1729 REMARK 3 L33: 14.6353 L12: -6.3867 REMARK 3 L13: 4.6362 L23: -2.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.9636 S12: 0.5423 S13: -0.7246 REMARK 3 S21: -0.4113 S22: -0.1823 S23: 0.2474 REMARK 3 S31: -0.2441 S32: 0.6897 S33: -0.7812 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5141 -31.1844 -4.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.3517 REMARK 3 T33: 0.1440 T12: 0.0292 REMARK 3 T13: -0.0786 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.9527 L22: 8.5027 REMARK 3 L33: 18.5266 L12: -0.9196 REMARK 3 L13: -7.5546 L23: 2.7068 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.2825 S13: -0.1115 REMARK 3 S21: -0.6044 S22: -0.1325 S23: -0.0771 REMARK 3 S31: 0.2492 S32: -0.4058 S33: 0.2222 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4516 -25.2678 1.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.1733 REMARK 3 T33: 0.1794 T12: 0.0169 REMARK 3 T13: -0.0321 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 11.6238 L22: 6.4626 REMARK 3 L33: 4.9595 L12: -2.8705 REMARK 3 L13: -1.5127 L23: 0.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0129 S13: 0.3268 REMARK 3 S21: -0.0103 S22: 0.0301 S23: 0.7286 REMARK 3 S31: -0.1354 S32: -0.5658 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1085 -23.4178 -7.6476 REMARK 3 T TENSOR REMARK 3 T11: 0.4818 T22: 0.2467 REMARK 3 T33: 0.1648 T12: -0.0309 REMARK 3 T13: -0.1414 T23: 0.1464 REMARK 3 L TENSOR REMARK 3 L11: 25.8550 L22: 1.0110 REMARK 3 L33: 5.9181 L12: -4.4329 REMARK 3 L13: 1.1835 L23: 0.0135 REMARK 3 S TENSOR REMARK 3 S11: 0.3500 S12: 0.7896 S13: -0.0179 REMARK 3 S21: -0.4742 S22: -0.0817 S23: 0.1140 REMARK 3 S31: -0.3342 S32: -0.0287 S33: -0.2682 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6977 -25.5204 1.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.2300 REMARK 3 T33: 0.2650 T12: -0.0340 REMARK 3 T13: -0.0054 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 16.1075 L22: 2.4783 REMARK 3 L33: 14.0166 L12: -2.6550 REMARK 3 L13: 7.2833 L23: -2.7157 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: 0.0817 S13: 0.8256 REMARK 3 S21: 0.1331 S22: 0.0640 S23: -0.2648 REMARK 3 S31: -0.3826 S32: 0.5351 S33: 0.1098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4FVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% ETHANOL, 0.02 CADMIUM SULFATE, 0.1 REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.97900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.95800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.97900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.95800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.97900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 45.95800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.97900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.95800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 AUTHORS STATE THE BIOLOGICAL ASSEMBLY IS AN OLIGOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 81 REMARK 465 PRO A 82 REMARK 465 LEU A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 PRO A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 ASP A 89 REMARK 465 SER A 90 REMARK 465 ALA A 91 REMARK 465 ALA A 92 REMARK 465 LYS A 93 REMARK 465 LEU A 203 REMARK 465 GLN A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 MET A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 GLU A 210 REMARK 465 ALA A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 THR A 130 OG1 CG2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLN A 202 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 106 O HOH A 495 1.93 REMARK 500 O HOH A 459 O HOH A 477 2.12 REMARK 500 OE1 GLN A 175 O HOH A 451 2.16 REMARK 500 O HOH A 462 O HOH A 476 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 196 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 32.13 -95.47 REMARK 500 LYS A 195 -126.58 -106.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 169 OE2 REMARK 620 2 GLU A 169 OE1 65.5 REMARK 620 3 HIS A 172 ND1 77.2 138.1 REMARK 620 4 HIS A 173 NE2 85.2 93.8 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 ND1 REMARK 620 2 HIS A 172 ND1 97.1 REMARK 620 3 HOH A 436 O 103.5 147.0 REMARK 620 4 HOH A 488 O 113.2 96.7 98.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FVF RELATED DB: PDB REMARK 900 ALTERNATIVE CRYSTAL FORM OF THE STOMATIN DIMER REMARK 900 RELATED ID: 4FVJ RELATED DB: PDB DBREF 4FVG A 86 213 UNP P54116 STOM_MOUSE 86 213 SEQADV 4FVG GLY A 81 UNP P54116 EXPRESSION TAG SEQADV 4FVG PRO A 82 UNP P54116 EXPRESSION TAG SEQADV 4FVG LEU A 83 UNP P54116 EXPRESSION TAG SEQADV 4FVG GLY A 84 UNP P54116 EXPRESSION TAG SEQADV 4FVG SER A 85 UNP P54116 EXPRESSION TAG SEQADV 4FVG SER A 87 UNP P54116 CYS 87 ENGINEERED MUTATION SEQADV 4FVG ALA A 91 UNP P54116 LEU 91 ENGINEERED MUTATION SEQADV 4FVG ALA A 92 UNP P54116 ILE 92 ENGINEERED MUTATION SEQRES 1 A 133 GLY PRO LEU GLY SER PRO SER THR ASP SER ALA ALA LYS SEQRES 2 A 133 VAL ASP MET ARG THR ILE SER PHE ASP ILE PRO PRO GLN SEQRES 3 A 133 GLU VAL LEU THR LYS ASP SER VAL THR ILE SER VAL ASP SEQRES 4 A 133 GLY VAL VAL TYR TYR ARG VAL GLN ASN ALA THR LEU ALA SEQRES 5 A 133 VAL ALA ASN ILE THR ASN ALA ASP SER ALA THR ARG LEU SEQRES 6 A 133 LEU ALA GLN THR THR LEU ARG ASN ALA LEU GLY THR LYS SEQRES 7 A 133 ASN LEU SER GLN ILE LEU SER ASP ARG GLU GLU ILE ALA SEQRES 8 A 133 HIS HIS MET GLN SER THR LEU ASP ASP ALA THR ASP ASP SEQRES 9 A 133 TRP GLY ILE LYS VAL GLU ARG VAL GLU ILE LYS ASP VAL SEQRES 10 A 133 LYS LEU PRO VAL GLN LEU GLN ARG ALA MET ALA ALA GLU SEQRES 11 A 133 ALA GLU ALA HET CD A 301 1 HET CD A 302 1 HETNAM CD CADMIUM ION FORMUL 2 CD 2(CD 2+) FORMUL 4 HOH *96(H2 O) HELIX 1 1 ASN A 128 ASN A 135 1 8 HELIX 2 2 ASN A 138 THR A 157 1 20 HELIX 3 3 ASN A 159 ASP A 166 1 8 HELIX 4 4 ASP A 166 ASP A 183 1 18 SHEET 1 A 3 ILE A 99 LEU A 109 0 SHEET 2 A 3 THR A 115 VAL A 126 -1 O TYR A 124 N ILE A 99 SHEET 3 A 3 ILE A 187 LYS A 198 -1 O LYS A 188 N ARG A 125 LINK OE2 GLU A 169 CD CD A 301 1555 1555 1.97 LINK OE1 GLU A 169 CD CD A 301 1555 1555 2.14 LINK ND1BHIS A 172 CD CD A 301 1555 1555 2.56 LINK ND1BHIS A 172 CD CD A 302 1555 1555 2.14 LINK ND1AHIS A 172 CD CD A 302 1555 1555 2.28 LINK NE2 HIS A 173 CD CD A 301 1555 1555 2.48 LINK CD CD A 302 O HOH A 436 1555 1555 2.67 LINK CD CD A 302 O HOH A 488 1555 1555 2.25 SITE 1 AC1 4 GLU A 169 HIS A 172 HIS A 173 CD A 302 SITE 1 AC2 5 GLU A 169 HIS A 172 CD A 301 HOH A 436 SITE 2 AC2 5 HOH A 488 CRYST1 84.489 84.489 68.937 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011836 0.006833 0.000000 0.00000 SCALE2 0.000000 0.013667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014506 0.00000