HEADER TRANSCRIPTION REGULATOR/DNA 02-JUL-12 4FX4 TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS TRANSCRIPTIONAL REGULATOR MOSR TITLE 2 (RV1049) IN COMPEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*AP*CP*AP*GP*AP*TP*TP*CP*GP*TP*GP*TP*AP*GP*CP*TP*AP*CP*AP*CP*GP* COMPND 4 AP*AP*TP*CP*TP*GP*T)-3'); COMPND 5 CHAIN: D, C; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PROMOTER DNA; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN; COMPND 10 CHAIN: A, B; COMPND 11 SYNONYM: TRANSCRIPTIONAL REGULATOR, MARR FAMILY, PUTATIVE; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC DNA; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHETIC DNA CORRESPONDING TO THE PROMOTER SEQUENCE SOURCE 6 OF RV1049; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 9 ORGANISM_TAXID: 1773; SOURCE 10 STRAIN: H37RV; SOURCE 11 GENE: MT1079, RV1049; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HELIX-TURN-HELIX, TRANSCRIPTIONAL REPRESSOR, DNA BINDING, KEYWDS 2 TRANSCRIPTION REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.BRUGAROLAS,C.HE REVDAT 5 06-DEC-23 4FX4 1 REMARK REVDAT 4 13-SEP-23 4FX4 1 REMARK SEQADV LINK REVDAT 3 21-NOV-12 4FX4 1 JRNL REVDAT 2 03-OCT-12 4FX4 1 JRNL REVDAT 1 26-SEP-12 4FX4 0 JRNL AUTH P.BRUGAROLAS,F.MOVAHEDZADEH,Y.WANG,N.ZHANG,I.L.BARTEK, JRNL AUTH 2 Y.N.GAO,M.I.VOSKUIL,S.G.FRANZBLAU,C.HE JRNL TITL THE OXIDATION-SENSING REGULATOR (MOSR) IS A NEW JRNL TITL 2 REDOX-DEPENDENT TRANSCRIPTION FACTOR IN MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 287 37703 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22992749 JRNL DOI 10.1074/JBC.M112.388611 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 7799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4761 - 4.4676 1.00 2482 129 0.2201 0.2516 REMARK 3 2 4.4676 - 3.5480 1.00 2487 109 0.2462 0.3127 REMARK 3 3 3.5480 - 3.1001 0.99 2470 122 0.2990 0.3240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 53.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.49230 REMARK 3 B22 (A**2) : -13.49230 REMARK 3 B33 (A**2) : 26.98470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3094 REMARK 3 ANGLE : 0.818 4373 REMARK 3 CHIRALITY : 0.045 508 REMARK 3 PLANARITY : 0.003 396 REMARK 3 DIHEDRAL : 22.377 1227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 4:11) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5248 46.2549 -27.8408 REMARK 3 T TENSOR REMARK 3 T11: 1.0183 T22: 1.2446 REMARK 3 T33: 0.7164 T12: -0.0367 REMARK 3 T13: -0.1652 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.7626 L22: 3.0765 REMARK 3 L33: 0.3827 L12: 0.4786 REMARK 3 L13: -1.0552 L23: 0.0669 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: 1.3030 S13: -1.1545 REMARK 3 S21: -1.1459 S22: 0.0199 S23: 0.0845 REMARK 3 S31: 0.5986 S32: -0.7474 S33: 0.9592 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 12:27) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4877 25.0971 5.9277 REMARK 3 T TENSOR REMARK 3 T11: 1.0230 T22: 0.8458 REMARK 3 T33: 1.0533 T12: -0.0847 REMARK 3 T13: 0.0255 T23: 0.1137 REMARK 3 L TENSOR REMARK 3 L11: 0.9265 L22: 1.0137 REMARK 3 L33: -0.8608 L12: 0.4587 REMARK 3 L13: -0.0370 L23: -2.8445 REMARK 3 S TENSOR REMARK 3 S11: 0.3415 S12: 0.0889 S13: -0.1085 REMARK 3 S21: 0.2617 S22: 0.4488 S23: 0.5671 REMARK 3 S31: 0.3827 S32: -0.1534 S33: 0.0667 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 4:12) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0133 19.8746 17.0452 REMARK 3 T TENSOR REMARK 3 T11: 1.0480 T22: 1.0236 REMARK 3 T33: 0.9055 T12: -0.1128 REMARK 3 T13: -0.0404 T23: 0.1634 REMARK 3 L TENSOR REMARK 3 L11: 1.2542 L22: 1.3209 REMARK 3 L33: 0.7876 L12: -1.6364 REMARK 3 L13: 0.0146 L23: 0.8023 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.5407 S13: 0.2476 REMARK 3 S21: 0.9068 S22: 0.0755 S23: 0.6999 REMARK 3 S31: -1.4692 S32: 0.2775 S33: 0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 13:19) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4864 35.3731 -5.0966 REMARK 3 T TENSOR REMARK 3 T11: 0.8789 T22: 0.9634 REMARK 3 T33: 0.9383 T12: 0.1213 REMARK 3 T13: 0.0293 T23: 0.1690 REMARK 3 L TENSOR REMARK 3 L11: 1.4564 L22: 1.4379 REMARK 3 L33: 0.0666 L12: 1.6739 REMARK 3 L13: 0.2959 L23: 0.3598 REMARK 3 S TENSOR REMARK 3 S11: 0.3035 S12: 0.5386 S13: -0.0070 REMARK 3 S21: 0.1659 S22: 0.7194 S23: 1.0786 REMARK 3 S31: 0.1772 S32: -0.5794 S33: -0.0008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 20:26) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5559 43.2964 -26.1581 REMARK 3 T TENSOR REMARK 3 T11: 1.1155 T22: 1.1150 REMARK 3 T33: 1.1340 T12: 0.0917 REMARK 3 T13: -0.2299 T23: -0.0966 REMARK 3 L TENSOR REMARK 3 L11: 1.4596 L22: 0.4482 REMARK 3 L33: 1.8886 L12: 0.4335 REMARK 3 L13: -0.9296 L23: 0.3539 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.3701 S13: 0.8607 REMARK 3 S21: 0.0117 S22: 0.2805 S23: 0.5850 REMARK 3 S31: 0.2351 S32: 0.0964 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 9:48) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8538 38.6929 0.5165 REMARK 3 T TENSOR REMARK 3 T11: 0.5619 T22: 0.7526 REMARK 3 T33: 0.7967 T12: 0.0538 REMARK 3 T13: -0.1811 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.7278 L22: 2.4923 REMARK 3 L33: 4.8400 L12: -1.2531 REMARK 3 L13: -0.2278 L23: -3.2570 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: -0.5255 S13: -0.5449 REMARK 3 S21: 0.8876 S22: 0.2570 S23: -0.7915 REMARK 3 S31: -0.0485 S32: -0.1601 S33: -0.8335 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 49:58) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2221 57.5973 -13.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.9632 T22: 1.2645 REMARK 3 T33: 1.5527 T12: 0.1560 REMARK 3 T13: 0.1527 T23: -0.2919 REMARK 3 L TENSOR REMARK 3 L11: 0.1255 L22: 0.5555 REMARK 3 L33: 0.1657 L12: -0.2929 REMARK 3 L13: 0.1377 L23: -0.1209 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.1862 S13: -0.8544 REMARK 3 S21: 1.4579 S22: 1.3875 S23: -1.5420 REMARK 3 S31: 0.6507 S32: -0.1457 S33: -0.0018 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 59:69) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6373 46.2343 -14.5212 REMARK 3 T TENSOR REMARK 3 T11: 0.6442 T22: 1.0364 REMARK 3 T33: 0.7449 T12: -0.0098 REMARK 3 T13: 0.0419 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.2021 L22: 0.5817 REMARK 3 L33: 0.6632 L12: -0.8119 REMARK 3 L13: 0.3850 L23: -0.1487 REMARK 3 S TENSOR REMARK 3 S11: 0.2513 S12: 0.0843 S13: 2.0473 REMARK 3 S21: -0.9468 S22: -2.0975 S23: -0.7784 REMARK 3 S31: 0.4638 S32: 0.0741 S33: -0.0364 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 70:89) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3720 48.1667 -7.4420 REMARK 3 T TENSOR REMARK 3 T11: 0.7046 T22: 0.7442 REMARK 3 T33: 0.9202 T12: 0.2079 REMARK 3 T13: -0.1895 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.9937 L22: -0.0672 REMARK 3 L33: 2.1852 L12: 0.0337 REMARK 3 L13: -0.6933 L23: -0.3477 REMARK 3 S TENSOR REMARK 3 S11: 0.6983 S12: -0.7534 S13: 0.7783 REMARK 3 S21: 0.4315 S22: -0.0986 S23: 0.7540 REMARK 3 S31: 0.3920 S32: -1.0269 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 90:102) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6774 56.6595 -12.3194 REMARK 3 T TENSOR REMARK 3 T11: 1.4354 T22: 0.7505 REMARK 3 T33: 0.4486 T12: 0.4417 REMARK 3 T13: 0.1796 T23: 0.2977 REMARK 3 L TENSOR REMARK 3 L11: 1.0363 L22: 2.0594 REMARK 3 L33: 1.2037 L12: -0.8409 REMARK 3 L13: -0.3510 L23: 1.5671 REMARK 3 S TENSOR REMARK 3 S11: 0.1859 S12: -0.0536 S13: 2.6230 REMARK 3 S21: -0.6224 S22: -0.0095 S23: -1.9547 REMARK 3 S31: -1.4127 S32: 1.1819 S33: 0.3468 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 103:147) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7917 44.2681 -1.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.9653 T22: 0.5906 REMARK 3 T33: 0.5420 T12: -0.0523 REMARK 3 T13: -0.3725 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 2.9049 L22: 1.1270 REMARK 3 L33: 2.1412 L12: 1.6658 REMARK 3 L13: -1.0785 L23: 1.0736 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: -0.6696 S13: -0.2451 REMARK 3 S21: -0.6391 S22: -0.6983 S23: -2.0708 REMARK 3 S31: -0.8506 S32: 0.4530 S33: -0.0263 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 9:33) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5543 33.0485 -11.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.5443 T22: 0.7960 REMARK 3 T33: 0.7343 T12: 0.0659 REMARK 3 T13: -0.0267 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.5552 L22: 1.9032 REMARK 3 L33: 4.8753 L12: -0.6205 REMARK 3 L13: -3.5818 L23: -0.4617 REMARK 3 S TENSOR REMARK 3 S11: 0.2894 S12: -0.0248 S13: 0.4695 REMARK 3 S21: 0.3124 S22: 0.1558 S23: -0.0240 REMARK 3 S31: -0.4456 S32: 0.2162 S33: 1.5645 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 34:69) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3698 17.9602 -1.6866 REMARK 3 T TENSOR REMARK 3 T11: 0.7995 T22: 0.8415 REMARK 3 T33: 0.8830 T12: -0.0909 REMARK 3 T13: 0.0761 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.4355 L22: 2.5545 REMARK 3 L33: 0.7642 L12: 1.0708 REMARK 3 L13: -1.0543 L23: -1.2570 REMARK 3 S TENSOR REMARK 3 S11: -0.6061 S12: -1.0648 S13: 0.4581 REMARK 3 S21: -0.0059 S22: -0.2301 S23: -0.6153 REMARK 3 S31: 0.2661 S32: 0.7259 S33: -0.0013 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 70:82) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8382 20.0423 -1.3543 REMARK 3 T TENSOR REMARK 3 T11: 1.1154 T22: 0.8637 REMARK 3 T33: 1.4775 T12: -0.1898 REMARK 3 T13: 0.0778 T23: 0.2447 REMARK 3 L TENSOR REMARK 3 L11: 1.7687 L22: 0.2107 REMARK 3 L33: 1.1893 L12: 0.0066 REMARK 3 L13: -0.2594 L23: -0.5465 REMARK 3 S TENSOR REMARK 3 S11: 0.7222 S12: 1.2485 S13: -1.4675 REMARK 3 S21: 0.5810 S22: -0.4654 S23: -0.3957 REMARK 3 S31: 0.6222 S32: -1.3672 S33: -0.0277 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 83:90) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5450 9.7606 -3.1272 REMARK 3 T TENSOR REMARK 3 T11: 1.7301 T22: 0.3852 REMARK 3 T33: 2.1721 T12: -0.2136 REMARK 3 T13: -0.0308 T23: 0.2922 REMARK 3 L TENSOR REMARK 3 L11: 2.0575 L22: 0.4824 REMARK 3 L33: 0.6758 L12: -0.6521 REMARK 3 L13: -0.9374 L23: 0.5859 REMARK 3 S TENSOR REMARK 3 S11: -0.1975 S12: -0.2735 S13: -3.4536 REMARK 3 S21: 0.3268 S22: -0.6551 S23: 0.3593 REMARK 3 S31: 0.8436 S32: -1.1963 S33: -0.4250 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 91:130) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5742 16.1130 -8.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.9656 T22: 0.6786 REMARK 3 T33: 0.9395 T12: -0.1147 REMARK 3 T13: 0.1408 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.1156 L22: 0.5026 REMARK 3 L33: -0.2867 L12: -1.0040 REMARK 3 L13: 0.1066 L23: -0.1585 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.3472 S13: -0.3327 REMARK 3 S21: -0.5310 S22: -0.1976 S23: -0.3271 REMARK 3 S31: 0.9772 S32: 0.4914 S33: -0.0016 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 131:149) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2414 30.4597 3.3799 REMARK 3 T TENSOR REMARK 3 T11: 0.9344 T22: 1.0128 REMARK 3 T33: 1.1987 T12: 0.2132 REMARK 3 T13: -0.2516 T23: -0.2194 REMARK 3 L TENSOR REMARK 3 L11: 1.0240 L22: 1.9547 REMARK 3 L33: 2.6513 L12: -0.7199 REMARK 3 L13: 1.4142 L23: 0.5638 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.2750 S13: -0.2397 REMARK 3 S21: 0.4514 S22: 0.0333 S23: -0.5815 REMARK 3 S31: -0.6149 S32: 0.1555 S33: -0.3511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7799 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.475 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1Z9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE/POTASSIUM PHOSPHATE DIBASIC, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.29250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.31544 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.96233 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 73.29250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.31544 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.96233 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 73.29250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.31544 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.96233 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.63089 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.92467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 84.63089 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.92467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 84.63089 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.92467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT D 1 REMARK 465 DA D 2 REMARK 465 DC D 3 REMARK 465 DG D 28 REMARK 465 DT D 29 REMARK 465 DT C 1 REMARK 465 DA C 2 REMARK 465 DC C 3 REMARK 465 DT C 27 REMARK 465 DG C 28 REMARK 465 DT C 29 REMARK 465 MSE A 5 REMARK 465 ALA A 6 REMARK 465 PHE A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 53 REMARK 465 GLY A 54 REMARK 465 ILE A 55 REMARK 465 ALA A 92 REMARK 465 ASP A 93 REMARK 465 ALA A 94 REMARK 465 ARG A 95 REMARK 465 SER A 126 REMARK 465 VAL A 127 REMARK 465 GLY A 128 REMARK 465 ASP A 129 REMARK 465 ARG A 148 REMARK 465 LEU A 149 REMARK 465 VAL A 150 REMARK 465 PRO A 151 REMARK 465 ARG A 152 REMARK 465 MSE B 5 REMARK 465 ALA B 6 REMARK 465 PHE B 7 REMARK 465 ASP B 8 REMARK 465 GLU B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 ALA B 53 REMARK 465 GLY B 54 REMARK 465 ILE B 55 REMARK 465 ASP B 56 REMARK 465 LEU B 57 REMARK 465 VAL B 150 REMARK 465 PRO B 151 REMARK 465 ARG B 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 25 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 96.85 -67.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FX0 RELATED DB: PDB DBREF 4FX4 A 6 148 UNP O53397 O53397_MYCTU 6 148 DBREF 4FX4 B 6 148 UNP O53397 O53397_MYCTU 6 148 DBREF 4FX4 D 1 29 PDB 4FX4 4FX4 1 29 DBREF 4FX4 C 1 29 PDB 4FX4 4FX4 1 29 SEQADV 4FX4 MSE A 5 UNP O53397 EXPRESSION TAG SEQADV 4FX4 LEU A 149 UNP O53397 EXPRESSION TAG SEQADV 4FX4 VAL A 150 UNP O53397 EXPRESSION TAG SEQADV 4FX4 PRO A 151 UNP O53397 EXPRESSION TAG SEQADV 4FX4 ARG A 152 UNP O53397 EXPRESSION TAG SEQADV 4FX4 MSE B 5 UNP O53397 EXPRESSION TAG SEQADV 4FX4 LEU B 149 UNP O53397 EXPRESSION TAG SEQADV 4FX4 VAL B 150 UNP O53397 EXPRESSION TAG SEQADV 4FX4 PRO B 151 UNP O53397 EXPRESSION TAG SEQADV 4FX4 ARG B 152 UNP O53397 EXPRESSION TAG SEQRES 1 D 29 DT DA DC DA DG DA DT DT DC DG DT DG DT SEQRES 2 D 29 DA DG DC DT DA DC DA DC DG DA DA DT DC SEQRES 3 D 29 DT DG DT SEQRES 1 C 29 DT DA DC DA DG DA DT DT DC DG DT DG DT SEQRES 2 C 29 DA DG DC DT DA DC DA DC DG DA DA DT DC SEQRES 3 C 29 DT DG DT SEQRES 1 A 148 MSE ALA PHE ASP GLU CYS ALA CYS TYR THR THR ARG ARG SEQRES 2 A 148 ALA ALA ARG GLN LEU GLY GLN ALA TYR ASP ARG ALA LEU SEQRES 3 A 148 ARG PRO SER GLY LEU THR ASN THR GLN PHE SER THR LEU SEQRES 4 A 148 ALA VAL ILE SER LEU SER GLU GLY SER ALA GLY ILE ASP SEQRES 5 A 148 LEU THR MSE SER GLU LEU ALA ALA ARG ILE GLY VAL GLU SEQRES 6 A 148 ARG THR THR LEU THR ARG ASN LEU GLU VAL MSE ARG ARG SEQRES 7 A 148 ASP GLY LEU VAL ARG VAL MSE ALA GLY ALA ASP ALA ARG SEQRES 8 A 148 CYS LYS ARG ILE GLU LEU THR ALA LYS GLY ARG ALA ALA SEQRES 9 A 148 LEU GLN LYS ALA VAL PRO LEU TRP ARG GLY VAL GLN ALA SEQRES 10 A 148 GLU VAL THR ALA SER VAL GLY ASP TRP PRO ARG VAL ARG SEQRES 11 A 148 ARG ASP ILE ALA ASN LEU GLY GLN ALA ALA GLU ALA CYS SEQRES 12 A 148 ARG LEU VAL PRO ARG SEQRES 1 B 148 MSE ALA PHE ASP GLU CYS ALA CYS TYR THR THR ARG ARG SEQRES 2 B 148 ALA ALA ARG GLN LEU GLY GLN ALA TYR ASP ARG ALA LEU SEQRES 3 B 148 ARG PRO SER GLY LEU THR ASN THR GLN PHE SER THR LEU SEQRES 4 B 148 ALA VAL ILE SER LEU SER GLU GLY SER ALA GLY ILE ASP SEQRES 5 B 148 LEU THR MSE SER GLU LEU ALA ALA ARG ILE GLY VAL GLU SEQRES 6 B 148 ARG THR THR LEU THR ARG ASN LEU GLU VAL MSE ARG ARG SEQRES 7 B 148 ASP GLY LEU VAL ARG VAL MSE ALA GLY ALA ASP ALA ARG SEQRES 8 B 148 CYS LYS ARG ILE GLU LEU THR ALA LYS GLY ARG ALA ALA SEQRES 9 B 148 LEU GLN LYS ALA VAL PRO LEU TRP ARG GLY VAL GLN ALA SEQRES 10 B 148 GLU VAL THR ALA SER VAL GLY ASP TRP PRO ARG VAL ARG SEQRES 11 B 148 ARG ASP ILE ALA ASN LEU GLY GLN ALA ALA GLU ALA CYS SEQRES 12 B 148 ARG LEU VAL PRO ARG MODRES 4FX4 MSE A 59 MET SELENOMETHIONINE MODRES 4FX4 MSE A 80 MET SELENOMETHIONINE MODRES 4FX4 MSE A 89 MET SELENOMETHIONINE MODRES 4FX4 MSE B 59 MET SELENOMETHIONINE MODRES 4FX4 MSE B 80 MET SELENOMETHIONINE MODRES 4FX4 MSE B 89 MET SELENOMETHIONINE HET MSE A 59 8 HET MSE A 80 8 HET MSE A 89 8 HET MSE B 59 8 HET MSE B 80 8 HET MSE B 89 8 HET PO4 A 201 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 3 MSE 6(C5 H11 N O2 SE) FORMUL 5 PO4 O4 P 3- HELIX 1 1 CYS A 10 LEU A 30 1 21 HELIX 2 2 ARG A 31 GLY A 34 5 4 HELIX 3 3 THR A 36 SER A 49 1 14 HELIX 4 4 THR A 58 GLY A 67 1 10 HELIX 5 5 GLU A 69 ASP A 83 1 15 HELIX 6 6 THR A 102 LYS A 111 1 10 HELIX 7 7 ALA A 112 ALA A 125 1 14 HELIX 8 8 PRO A 131 ALA A 146 1 16 HELIX 9 9 CYS B 10 LEU B 30 1 21 HELIX 10 10 ARG B 31 GLY B 34 5 4 HELIX 11 11 THR B 36 SER B 49 1 14 HELIX 12 12 MSE B 59 GLY B 67 1 9 HELIX 13 13 GLU B 69 ASP B 83 1 15 HELIX 14 14 THR B 102 SER B 126 1 25 HELIX 15 15 ASP B 129 ALA B 146 1 18 SHEET 1 A 2 VAL A 86 MSE A 89 0 SHEET 2 A 2 ARG A 98 LEU A 101 -1 O ARG A 98 N MSE A 89 SHEET 1 B 2 VAL B 86 ALA B 90 0 SHEET 2 B 2 LYS B 97 LEU B 101 -1 O ARG B 98 N MSE B 89 LINK C THR A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N SER A 60 1555 1555 1.33 LINK C VAL A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N ARG A 81 1555 1555 1.33 LINK C VAL A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ALA A 90 1555 1555 1.33 LINK C THR B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N SER B 60 1555 1555 1.33 LINK C VAL B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N ARG B 81 1555 1555 1.33 LINK C VAL B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N ALA B 90 1555 1555 1.33 SITE 1 AC1 2 ARG A 16 ARG B 16 CRYST1 146.585 146.585 53.887 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006822 0.003939 0.000000 0.00000 SCALE2 0.000000 0.007877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018557 0.00000