HEADER BLOOD CLOTTING 02-JUL-12 4FX5 TITLE VON WILLEBRAND FACTOR TYPE A FROM CATENULISPORA ACIDIPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON WILLEBRAND FACTOR TYPE A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CATENULISPORA ACIDIPHILA; SOURCE 3 ORGANISM_TAXID: 479433; SOURCE 4 STRAIN: DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897; SOURCE 5 GENE: CACI_2163; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG73 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,R.JEDRZEJCZAK, AUTHOR 2 A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 3 15-NOV-17 4FX5 1 REMARK REVDAT 2 10-OCT-12 4FX5 1 AUTHOR REVDAT 1 18-JUL-12 4FX5 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA, JRNL AUTH 2 R.JEDRZEJCZAK,A.JOACHIMIAK,W.F.ANDERSON, JRNL AUTH 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL VON WILLEBRAND FACTOR TYPE A FROM CATENULISPORA ACIDIPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 44426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.54000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.543 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3324 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2223 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4512 ; 1.427 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5424 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 5.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;35.892 ;24.097 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;11.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3817 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2161 ; 1.663 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 896 ; 1.363 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3453 ; 2.621 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1163 ; 4.504 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1059 ; 6.711 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3260 ; 2.399 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2433 26.2111 16.0559 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.0147 REMARK 3 T33: 0.0651 T12: -0.0076 REMARK 3 T13: 0.0064 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.4089 L22: 1.1042 REMARK 3 L33: 2.8125 L12: 0.0805 REMARK 3 L13: 0.0329 L23: 0.3543 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0639 S13: -0.0906 REMARK 3 S21: 0.0173 S22: 0.0235 S23: -0.0105 REMARK 3 S31: 0.1732 S32: -0.0524 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0608 58.6504 20.3754 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0052 REMARK 3 T33: 0.0092 T12: 0.0029 REMARK 3 T13: 0.0032 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.8812 L22: 0.9242 REMARK 3 L33: 1.0503 L12: -0.0471 REMARK 3 L13: 0.0834 L23: -0.3056 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.0568 S13: 0.0789 REMARK 3 S21: 0.0379 S22: 0.0054 S23: -0.0154 REMARK 3 S31: -0.0566 S32: -0.0374 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1937 28.1575 13.7821 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0187 REMARK 3 T33: 0.0390 T12: 0.0127 REMARK 3 T13: -0.0040 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.5583 L22: 1.1618 REMARK 3 L33: 1.5062 L12: 0.0614 REMARK 3 L13: -0.0807 L23: 0.1751 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.0254 S13: -0.0603 REMARK 3 S21: 0.0185 S22: 0.0118 S23: -0.1411 REMARK 3 S31: 0.1958 S32: 0.1161 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 344 A 437 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0654 46.5767 -7.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.0059 T22: 0.0265 REMARK 3 T33: 0.0081 T12: -0.0009 REMARK 3 T13: -0.0009 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8372 L22: 1.9691 REMARK 3 L33: 1.9030 L12: 0.2452 REMARK 3 L13: 0.0125 L23: -0.7095 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.0702 S13: -0.0316 REMARK 3 S21: -0.0846 S22: -0.0197 S23: -0.0432 REMARK 3 S31: 0.0529 S32: -0.0428 S33: -0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FLUORIDE, 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.83650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.27300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.27300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.83650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.31550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 38 REMARK 465 ALA A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 SER A 44 REMARK 465 TYR A 45 REMARK 465 GLY A 46 REMARK 465 ALA A 47 REMARK 465 PRO A 48 REMARK 465 ALA A 49 REMARK 465 SER A 50 REMARK 465 GLY A 51 REMARK 465 LYS A 438 REMARK 465 ARG A 439 REMARK 465 ASN A 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 3 68.34 -113.21 REMARK 500 THR A 99 -138.78 -137.20 REMARK 500 ASN A 133 136.46 -175.32 REMARK 500 ASP A 274 -38.49 -39.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 65 OG REMARK 620 2 HOH A 627 O 161.8 REMARK 620 3 SER A 63 OG 98.8 90.1 REMARK 620 4 ASP A 164 OD1 82.0 80.8 100.5 REMARK 620 5 HOH A 831 O 84.4 97.7 143.7 115.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC103207 RELATED DB: TARGETTRACK DBREF 4FX5 A 1 440 UNP C7QHQ7 C7QHQ7_CATAD 1 440 SEQADV 4FX5 MSE A -23 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 HIS A -22 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 HIS A -21 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 HIS A -20 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 HIS A -19 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 HIS A -18 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 HIS A -17 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 SER A -16 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 SER A -15 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 GLY A -14 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 VAL A -13 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 ASP A -12 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 LEU A -11 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 GLY A -10 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 THR A -9 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 GLU A -8 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 ASN A -7 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 LEU A -6 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 TYR A -5 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 PHE A -4 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 GLN A -3 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 SER A -2 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 ASN A -1 UNP C7QHQ7 EXPRESSION TAG SEQADV 4FX5 ALA A 0 UNP C7QHQ7 EXPRESSION TAG SEQRES 1 A 464 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 464 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MSE SER SEQRES 3 A 464 GLN TYR PRO ASP PHE ALA PHE GLU ILE ASN GLN ASN GLU SEQRES 4 A 464 PHE LEU ALA ALA GLY VAL ARG GLU VAL HIS ALA VAL VAL SEQRES 5 A 464 THR LEU THR ALA THR ALA ALA ALA GLY GLY ALA PRO ALA SEQRES 6 A 464 ALA ALA SER TYR GLY ALA PRO ALA SER GLY SER GLU ASN SEQRES 7 A 464 VAL GLU VAL ILE ILE ILE ASP CYS SER GLY SER MSE ASP SEQRES 8 A 464 TYR PRO ARG THR LYS MSE MSE ALA ALA LYS GLU ALA THR SEQRES 9 A 464 LYS VAL ALA ILE ASP THR LEU THR ASP GLY ALA PHE PHE SEQRES 10 A 464 ALA VAL VAL ALA GLY THR GLU GLY ALA ARG VAL VAL TYR SEQRES 11 A 464 PRO THR GLY GLY GLN LEU LEU ARG ALA ASP TYR GLN SER SEQRES 12 A 464 ARG ALA ALA ALA LYS GLU ALA VAL GLY ARG LEU HIS ALA SEQRES 13 A 464 ASN GLY GLY THR ALA MSE GLY ARG TRP LEU ALA GLN ALA SEQRES 14 A 464 GLY ARG ILE PHE ASP THR ALA PRO SER ALA ILE LYS HIS SEQRES 15 A 464 ALA ILE LEU LEU THR ASP GLY LYS ASP GLU SER GLU THR SEQRES 16 A 464 PRO ALA ASP LEU ALA ARG ALA ILE GLN SER SER ILE GLY SEQRES 17 A 464 ASN PHE THR ALA ASP CYS ARG GLY ILE GLY GLU ASP TRP SEQRES 18 A 464 GLU PRO LYS GLU LEU ARG LYS ILE ALA ASP ALA LEU LEU SEQRES 19 A 464 GLY THR VAL GLY ILE ILE ARG ASP PRO ALA THR LEU ALA SEQRES 20 A 464 GLU ASP PHE ARG GLU MSE THR ALA LYS SER MSE GLY LYS SEQRES 21 A 464 GLU VAL ALA ASP VAL ALA LEU ARG LEU TRP ALA PRO LYS SEQRES 22 A 464 GLY ALA THR ILE ARG TYR VAL LYS GLN VAL SER PRO ASN SEQRES 23 A 464 LEU ALA ASP LEU SER GLY MSE ARG VAL PRO GLY ASP ASN SEQRES 24 A 464 PRO LEU THR GLY ASP TYR PRO THR GLY ALA TRP GLY ALA SEQRES 25 A 464 GLU SER ARG GLU TYR HIS ILE CYS VAL GLU VAL GLU PRO SEQRES 26 A 464 GLY ASN ILE GLY GLN GLU LYS LEU ALA GLY ARG VAL GLN SEQRES 27 A 464 LEU VAL ALA LYS ASP ALA GLY GLY ALA THR LEU LEU GLY SEQRES 28 A 464 GLU GLY LYS ILE ARG ALA VAL TRP THR GLU ASP THR ASP SEQRES 29 A 464 LEU SER THR ARG ILE ASN GLY ARG VAL ALA HIS TYR THR SEQRES 30 A 464 GLY GLN ALA GLU MSE ALA ALA ALA ILE GLN GLU GLY LEU SEQRES 31 A 464 ASP ALA GLN ALA ALA GLY ASP LEU ASP THR ALA THR ALA SEQRES 32 A 464 ARG LEU GLY ARG ALA MSE ASP LEU ALA VAL GLU SER GLY SEQRES 33 A 464 HIS GLU ASP THR VAL LYS MSE LEU ARG LYS VAL THR GLU SEQRES 34 A 464 VAL ASP PRO ALA THR SER LYS VAL ARG ALA LYS ALA LYS SEQRES 35 A 464 VAL ASP LYS GLY ASP ALA MSE GLU LEU ASP VAL VAL SER SEQRES 36 A 464 THR LYS THR VAL ARG ALA LYS ARG ASN MODRES 4FX5 MSE A 66 MET SELENOMETHIONINE MODRES 4FX5 MSE A 73 MET SELENOMETHIONINE MODRES 4FX5 MSE A 74 MET SELENOMETHIONINE MODRES 4FX5 MSE A 138 MET SELENOMETHIONINE MODRES 4FX5 MSE A 229 MET SELENOMETHIONINE MODRES 4FX5 MSE A 234 MET SELENOMETHIONINE MODRES 4FX5 MSE A 269 MET SELENOMETHIONINE MODRES 4FX5 MSE A 358 MET SELENOMETHIONINE MODRES 4FX5 MSE A 385 MET SELENOMETHIONINE MODRES 4FX5 MSE A 399 MET SELENOMETHIONINE MODRES 4FX5 MSE A 425 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 73 8 HET MSE A 74 16 HET MSE A 138 8 HET MSE A 229 8 HET MSE A 234 8 HET MSE A 269 8 HET MSE A 358 8 HET MSE A 385 8 HET MSE A 399 16 HET MSE A 425 8 HET NA A 501 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 HOH *419(H2 O) HELIX 1 1 SER A 63 TYR A 68 5 6 HELIX 2 2 ARG A 70 LEU A 87 1 18 HELIX 3 3 ASP A 116 ARG A 129 1 14 HELIX 4 4 ALA A 137 ASP A 150 1 14 HELIX 5 5 THR A 171 ILE A 183 1 13 HELIX 6 6 GLU A 198 LEU A 209 1 12 HELIX 7 7 ASP A 218 ALA A 220 5 3 HELIX 8 8 THR A 221 GLY A 235 1 15 HELIX 9 9 SER A 267 ARG A 270 5 4 HELIX 10 10 ASP A 338 THR A 343 1 6 HELIX 11 11 ASN A 346 ALA A 371 1 26 HELIX 12 12 ASP A 373 GLY A 392 1 20 HELIX 13 13 HIS A 393 LYS A 402 1 10 HELIX 14 14 ASP A 420 SER A 431 1 12 SHEET 1 A 5 ASP A 6 ASN A 12 0 SHEET 2 A 5 GLU A 23 THR A 33 -1 O THR A 33 N ASP A 6 SHEET 3 A 5 GLU A 289 GLU A 298 -1 O GLU A 289 N ALA A 32 SHEET 4 A 5 THR A 252 SER A 260 -1 N THR A 252 O GLU A 298 SHEET 5 A 5 ALA A 264 ASP A 265 -1 O ALA A 264 N GLN A 258 SHEET 1 B 6 PHE A 16 LEU A 17 0 SHEET 2 B 6 GLY A 322 TRP A 335 1 O VAL A 334 N LEU A 17 SHEET 3 B 6 GLU A 307 ASP A 319 -1 N GLY A 311 O ILE A 331 SHEET 4 B 6 VAL A 238 TRP A 246 -1 N ARG A 244 O GLN A 314 SHEET 5 B 6 THR A 278 TRP A 286 -1 O TYR A 281 N LEU A 243 SHEET 6 B 6 VAL A 271 PRO A 272 -1 N VAL A 271 O ASP A 280 SHEET 1 C 3 ALA A 102 TYR A 106 0 SHEET 2 C 3 PHE A 92 GLY A 98 -1 N ALA A 97 O ARG A 103 SHEET 3 C 3 LEU A 113 ARG A 114 -1 O LEU A 113 N PHE A 93 SHEET 1 D 6 ALA A 102 TYR A 106 0 SHEET 2 D 6 PHE A 92 GLY A 98 -1 N ALA A 97 O ARG A 103 SHEET 3 D 6 ASN A 54 ASP A 61 1 N ILE A 60 O GLY A 98 SHEET 4 D 6 ILE A 156 THR A 163 1 O ILE A 160 N ILE A 59 SHEET 5 D 6 THR A 187 ILE A 193 1 O ARG A 191 N LEU A 161 SHEET 6 D 6 VAL A 213 ILE A 216 1 O ILE A 216 N GLY A 192 SHEET 1 E 2 THR A 404 VAL A 406 0 SHEET 2 E 2 VAL A 413 ALA A 415 -1 O ARG A 414 N GLU A 405 LINK C SER A 65 N MSE A 66 1555 1555 1.34 LINK C MSE A 66 N ASP A 67 1555 1555 1.34 LINK C LYS A 72 N MSE A 73 1555 1555 1.34 LINK C MSE A 73 N AMSE A 74 1555 1555 1.33 LINK C MSE A 73 N BMSE A 74 1555 1555 1.33 LINK C AMSE A 74 N ALA A 75 1555 1555 1.33 LINK C BMSE A 74 N ALA A 75 1555 1555 1.33 LINK C ALA A 137 N MSE A 138 1555 1555 1.32 LINK C MSE A 138 N GLY A 139 1555 1555 1.33 LINK C GLU A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N THR A 230 1555 1555 1.34 LINK C SER A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N GLY A 235 1555 1555 1.33 LINK C GLY A 268 N MSE A 269 1555 1555 1.34 LINK C MSE A 269 N ARG A 270 1555 1555 1.34 LINK C GLU A 357 N MSE A 358 1555 1555 1.33 LINK C MSE A 358 N ALA A 359 1555 1555 1.33 LINK C ALA A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N ASP A 386 1555 1555 1.32 LINK C LYS A 398 N AMSE A 399 1555 1555 1.33 LINK C LYS A 398 N BMSE A 399 1555 1555 1.33 LINK C AMSE A 399 N LEU A 400 1555 1555 1.33 LINK C BMSE A 399 N LEU A 400 1555 1555 1.33 LINK C ALA A 424 N MSE A 425 1555 1555 1.33 LINK C MSE A 425 N GLU A 426 1555 1555 1.33 LINK OG SER A 65 NA NA A 501 1555 1555 2.21 LINK NA NA A 501 O HOH A 627 1555 1555 2.32 LINK OG SER A 63 NA NA A 501 1555 1555 2.33 LINK OD1 ASP A 164 NA NA A 501 1555 1555 2.45 LINK NA NA A 501 O HOH A 831 1555 1555 2.45 CISPEP 1 TYR A 68 PRO A 69 0 -0.62 CISPEP 2 TYR A 106 PRO A 107 0 -3.78 CISPEP 3 SER A 260 PRO A 261 0 1.60 SITE 1 AC1 5 SER A 63 SER A 65 ASP A 164 HOH A 627 SITE 2 AC1 5 HOH A 831 CRYST1 49.673 62.631 142.546 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007015 0.00000