data_4G0X # _entry.id 4G0X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4G0X RCSB RCSB073598 WWPDB D_1000073598 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4G0M 'Crystal structure of Arabidopsis thaliana AGO2 MID domain' unspecified PDB 4G0O 'Crystal structure of Arabidopsis thaliana AGO5 MID domain' unspecified PDB 4G0P 'Structure of Arabidopsis thaliana AGO1 MID domain in complex with UMP' unspecified PDB 4G0Q 'Structure of Arabidopsis thaliana AGO1 MID domain in complex with CMP' unspecified PDB 4G0Y 'Structure of Arabidopsis AGO1 in complex with AMP' unspecified PDB 4G0Z 'Structure of Arabidopsis thaliana AGO1 MID domain in complex with GMP' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4G0X _pdbx_database_status.recvd_initial_deposition_date 2012-07-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Frank, F.' 1 'Hauver, J.' 2 'Sonenberg, N.' 3 'Nagar, B.' 4 # _citation.id primary _citation.title 'Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 31 _citation.page_first 3588 _citation.page_last 3595 _citation.year 2012 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22850669 _citation.pdbx_database_id_DOI 10.1038/emboj.2012.204 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Frank, F.' 1 primary 'Hauver, J.' 2 primary 'Sonenberg, N.' 3 primary 'Nagar, B.' 4 # _cell.entry_id 4G0X _cell.length_a 37.250 _cell.length_b 60.973 _cell.length_c 67.809 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G0X _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein argonaute 1' 16673.633 1 ? ? 'MID domain, UNP residues 593-738' ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 water nat water 18.015 173 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNKK(MSE)INGGTVNNWICINFSRQVQDNLARTFCQELAQ(MSE)CYVSG(MSE)AFNPEPVLPPVSARPEQVEKVLKT RYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFK(MSE)SKQY(MSE)ANVALKINVKV GGRNTVL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQG KEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 LYS n 1 4 LYS n 1 5 MSE n 1 6 ILE n 1 7 ASN n 1 8 GLY n 1 9 GLY n 1 10 THR n 1 11 VAL n 1 12 ASN n 1 13 ASN n 1 14 TRP n 1 15 ILE n 1 16 CYS n 1 17 ILE n 1 18 ASN n 1 19 PHE n 1 20 SER n 1 21 ARG n 1 22 GLN n 1 23 VAL n 1 24 GLN n 1 25 ASP n 1 26 ASN n 1 27 LEU n 1 28 ALA n 1 29 ARG n 1 30 THR n 1 31 PHE n 1 32 CYS n 1 33 GLN n 1 34 GLU n 1 35 LEU n 1 36 ALA n 1 37 GLN n 1 38 MSE n 1 39 CYS n 1 40 TYR n 1 41 VAL n 1 42 SER n 1 43 GLY n 1 44 MSE n 1 45 ALA n 1 46 PHE n 1 47 ASN n 1 48 PRO n 1 49 GLU n 1 50 PRO n 1 51 VAL n 1 52 LEU n 1 53 PRO n 1 54 PRO n 1 55 VAL n 1 56 SER n 1 57 ALA n 1 58 ARG n 1 59 PRO n 1 60 GLU n 1 61 GLN n 1 62 VAL n 1 63 GLU n 1 64 LYS n 1 65 VAL n 1 66 LEU n 1 67 LYS n 1 68 THR n 1 69 ARG n 1 70 TYR n 1 71 HIS n 1 72 ASP n 1 73 ALA n 1 74 THR n 1 75 SER n 1 76 LYS n 1 77 LEU n 1 78 SER n 1 79 GLN n 1 80 GLY n 1 81 LYS n 1 82 GLU n 1 83 ILE n 1 84 ASP n 1 85 LEU n 1 86 LEU n 1 87 ILE n 1 88 VAL n 1 89 ILE n 1 90 LEU n 1 91 PRO n 1 92 ASP n 1 93 ASN n 1 94 ASN n 1 95 GLY n 1 96 SER n 1 97 LEU n 1 98 TYR n 1 99 GLY n 1 100 ASP n 1 101 LEU n 1 102 LYS n 1 103 ARG n 1 104 ILE n 1 105 CYS n 1 106 GLU n 1 107 THR n 1 108 GLU n 1 109 LEU n 1 110 GLY n 1 111 ILE n 1 112 VAL n 1 113 SER n 1 114 GLN n 1 115 CYS n 1 116 CYS n 1 117 LEU n 1 118 THR n 1 119 LYS n 1 120 HIS n 1 121 VAL n 1 122 PHE n 1 123 LYS n 1 124 MSE n 1 125 SER n 1 126 LYS n 1 127 GLN n 1 128 TYR n 1 129 MSE n 1 130 ALA n 1 131 ASN n 1 132 VAL n 1 133 ALA n 1 134 LEU n 1 135 LYS n 1 136 ILE n 1 137 ASN n 1 138 VAL n 1 139 LYS n 1 140 VAL n 1 141 GLY n 1 142 GLY n 1 143 ARG n 1 144 ASN n 1 145 THR n 1 146 VAL n 1 147 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGO1, At1g48410, F11A17.3, T1N15.2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AGO1_ARATH _struct_ref.pdbx_db_accession O04379 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL ; _struct_ref.pdbx_align_begin 593 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4G0X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O04379 _struct_ref_seq.db_align_beg 593 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 738 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 147 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4G0X _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O04379 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G0X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M citric acid, 2 M ammonium sulfate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.pdbx_collection_date 2010-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'KOHZU double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08B1-1' _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08B1-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4G0X _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.35 _reflns.number_obs 35331 _reflns.number_all 36996 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.4 _reflns_shell.percent_possible_all 71.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4G0X _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 62602 _refine.ls_number_reflns_all 38732 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.670 _refine.ls_d_res_high 1.350 _refine.ls_percent_reflns_obs 95.50 _refine.ls_R_factor_obs 0.1632 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1623 _refine.ls_R_factor_R_free 0.1788 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.63 _refine.ls_number_reflns_R_free 3527 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -2.2111 _refine.aniso_B[2][2] -4.9042 _refine.aniso_B[3][3] 6.4266 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 40.000 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.25 _refine.pdbx_overall_phase_error 16.38 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1146 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1344 _refine_hist.d_res_high 1.350 _refine_hist.d_res_low 22.670 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 1241 'X-RAY DIFFRACTION' ? f_angle_d 1.352 ? ? 1695 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.489 ? ? 485 'X-RAY DIFFRACTION' ? f_chiral_restr 0.074 ? ? 196 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 215 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.3500 1.3685 1656 0.1913 67.00 0.1972 . . 103 . . . . 'X-RAY DIFFRACTION' . 1.3685 1.3880 1857 0.1852 73.00 0.2069 . . 110 . . . . 'X-RAY DIFFRACTION' . 1.3880 1.4088 1938 0.1859 80.00 0.2065 . . 117 . . . . 'X-RAY DIFFRACTION' . 1.4088 1.4308 2180 0.1738 87.00 0.1905 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.4308 1.4542 2256 0.1647 91.00 0.2146 . . 135 . . . . 'X-RAY DIFFRACTION' . 1.4542 1.4793 2311 0.1581 94.00 0.1984 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.4793 1.5062 2377 0.1584 96.00 0.1668 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.5062 1.5352 2449 0.1544 99.00 0.1614 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.5352 1.5665 2461 0.1538 100.00 0.1785 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.5665 1.6005 2459 0.1550 100.00 0.1624 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.6005 1.6378 2485 0.1467 100.00 0.1786 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.6378 1.6787 2498 0.1530 100.00 0.1718 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.6787 1.7241 2464 0.1514 100.00 0.1886 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.7241 1.7748 2469 0.1507 100.00 0.1654 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.7748 1.8321 2478 0.1486 100.00 0.1708 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.8321 1.8975 2473 0.1478 100.00 0.1998 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.8975 1.9734 2477 0.1532 100.00 0.1788 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.9734 2.0632 2468 0.1469 100.00 0.1707 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.0632 2.1719 2458 0.1474 100.00 0.1692 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.1719 2.3078 2477 0.1497 100.00 0.1957 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.3078 2.4858 2489 0.1586 100.00 0.1573 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.4858 2.7356 2476 0.1665 100.00 0.1950 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.7356 3.1306 2471 0.1726 100.00 0.1551 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.1306 3.9408 2473 0.1613 100.00 0.1961 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.9408 22.6728 2475 0.1900 100.00 0.1726 . . 145 . . . . # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4G0X _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 4G0X _struct.title 'Crystal Structure of Arabidopsis thaliana AGO1 MID domain' _struct.pdbx_descriptor 'Protein argonaute 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G0X _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text ;MID domain, small RNA 5' nucleotide recognition, GENE REGULATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 24 ? SER A 42 ? GLN A 24 SER A 42 1 ? 19 HELX_P HELX_P2 2 ARG A 58 ? GLU A 60 ? ARG A 58 GLU A 60 5 ? 3 HELX_P HELX_P3 3 GLN A 61 ? LYS A 76 ? GLN A 61 LYS A 76 1 ? 16 HELX_P HELX_P4 4 SER A 96 ? GLU A 108 ? SER A 96 GLU A 108 1 ? 13 HELX_P HELX_P5 5 THR A 118 ? MSE A 124 ? THR A 118 MSE A 124 1 ? 7 HELX_P HELX_P6 6 SER A 125 ? VAL A 140 ? SER A 125 VAL A 140 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 4 C ? ? ? 1_555 A MSE 5 N ? ? A LYS 4 A MSE 5 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 5 C ? ? ? 1_555 A ILE 6 N ? ? A MSE 5 A ILE 6 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A GLN 37 C ? ? ? 1_555 A MSE 38 N ? ? A GLN 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 38 C ? ? ? 1_555 A CYS 39 N ? ? A MSE 38 A CYS 39 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A GLY 43 C ? ? ? 1_555 A MSE 44 N ? ? A GLY 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 44 C ? ? ? 1_555 A ALA 45 N ? ? A MSE 44 A ALA 45 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A LYS 123 C ? ? ? 1_555 A MSE 124 N ? ? A LYS 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 124 C ? ? ? 1_555 A SER 125 N ? ? A MSE 124 A SER 125 1_555 ? ? ? ? ? ? ? 1.311 ? covale9 covale ? ? A TYR 128 C ? ? ? 1_555 A MSE 129 N ? ? A TYR 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.337 ? covale10 covale ? ? A MSE 129 C ? ? ? 1_555 A ALA 130 N ? ? A MSE 129 A ALA 130 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 5 ? ASN A 7 ? MSE A 5 ASN A 7 A 2 ARG A 143 ? ASN A 144 ? ARG A 143 ASN A 144 B 1 THR A 10 ? VAL A 11 ? THR A 10 VAL A 11 B 2 ALA A 45 ? PHE A 46 ? ALA A 45 PHE A 46 C 1 VAL A 55 ? SER A 56 ? VAL A 55 SER A 56 C 2 TRP A 14 ? ASN A 18 ? TRP A 14 ASN A 18 C 3 LEU A 85 ? LEU A 90 ? LEU A 85 LEU A 90 C 4 SER A 113 ? LEU A 117 ? SER A 113 LEU A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 6 O ARG A 143 ? O ARG A 143 B 1 2 N VAL A 11 ? N VAL A 11 O ALA A 45 ? O ALA A 45 C 1 2 O VAL A 55 ? O VAL A 55 N ASN A 18 ? N ASN A 18 C 2 3 N ILE A 15 ? N ILE A 15 O ILE A 87 ? O ILE A 87 C 3 4 N VAL A 88 ? N VAL A 88 O GLN A 114 ? O GLN A 114 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 98 ? TYR A 98 . ? 1_555 ? 2 AC1 8 LYS A 102 ? LYS A 102 . ? 1_555 ? 3 AC1 8 SER A 113 ? SER A 113 . ? 1_555 ? 4 AC1 8 GLN A 114 ? GLN A 114 . ? 1_555 ? 5 AC1 8 CYS A 115 ? CYS A 115 . ? 1_555 ? 6 AC1 8 LYS A 135 ? LYS A 135 . ? 1_555 ? 7 AC1 8 LYS A 139 ? LYS A 139 . ? 1_555 ? 8 AC1 8 SO4 C . ? SO4 A 202 . ? 1_555 ? 9 AC2 9 LYS A 102 ? LYS A 102 . ? 1_555 ? 10 AC2 9 GLU A 106 ? GLU A 106 . ? 1_555 ? 11 AC2 9 VAL A 112 ? VAL A 112 . ? 1_555 ? 12 AC2 9 SER A 113 ? SER A 113 . ? 1_555 ? 13 AC2 9 LYS A 139 ? LYS A 139 . ? 1_555 ? 14 AC2 9 LEU A 147 ? LEU A 147 . ? 4_466 ? 15 AC2 9 SO4 B . ? SO4 A 201 . ? 1_555 ? 16 AC2 9 HOH G . ? HOH A 354 . ? 1_555 ? 17 AC2 9 HOH G . ? HOH A 400 . ? 1_555 ? 18 AC3 10 SER A 20 ? SER A 20 . ? 1_555 ? 19 AC3 10 ARG A 21 ? ARG A 21 . ? 1_555 ? 20 AC3 10 GLN A 22 ? GLN A 22 . ? 1_555 ? 21 AC3 10 PRO A 91 ? PRO A 91 . ? 1_555 ? 22 AC3 10 HOH G . ? HOH A 320 . ? 1_555 ? 23 AC3 10 HOH G . ? HOH A 327 . ? 1_555 ? 24 AC3 10 HOH G . ? HOH A 352 . ? 1_555 ? 25 AC3 10 HOH G . ? HOH A 363 . ? 1_555 ? 26 AC3 10 HOH G . ? HOH A 413 . ? 1_555 ? 27 AC3 10 HOH G . ? HOH A 449 . ? 1_555 ? 28 AC4 6 ARG A 21 ? ARG A 21 . ? 1_555 ? 29 AC4 6 ARG A 58 ? ARG A 58 . ? 1_555 ? 30 AC4 6 PRO A 59 ? PRO A 59 . ? 1_555 ? 31 AC4 6 GLU A 60 ? GLU A 60 . ? 1_555 ? 32 AC4 6 HOH G . ? HOH A 366 . ? 1_555 ? 33 AC4 6 HOH G . ? HOH A 422 . ? 1_555 ? 34 AC5 7 HIS A 120 ? HIS A 120 . ? 1_555 ? 35 AC5 7 LYS A 123 ? LYS A 123 . ? 1_555 ? 36 AC5 7 SER A 125 ? SER A 125 . ? 1_555 ? 37 AC5 7 HOH G . ? HOH A 309 . ? 1_555 ? 38 AC5 7 HOH G . ? HOH A 368 . ? 1_555 ? 39 AC5 7 HOH G . ? HOH A 427 . ? 1_555 ? 40 AC5 7 HOH G . ? HOH A 430 . ? 1_555 ? # _database_PDB_matrix.entry_id 4G0X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] ? _database_PDB_matrix.origx_vector[2] ? _database_PDB_matrix.origx_vector[3] ? # _atom_sites.entry_id 4G0X _atom_sites.fract_transf_matrix[1][1] 0.026846 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016401 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014747 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 MSE 5 5 5 MSE MSE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 MSE 38 38 38 MSE MSE A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 MSE 44 44 44 MSE MSE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 CYS 116 116 116 CYS CYS A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 MSE 124 124 124 MSE MSE A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 MSE 129 129 129 MSE MSE A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 LEU 147 147 147 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 2 SO4 SO4 A . C 2 SO4 1 202 3 SO4 SO4 A . D 2 SO4 1 203 4 SO4 SO4 A . E 2 SO4 1 204 5 SO4 SO4 A . F 2 SO4 1 205 6 SO4 SO4 A . G 3 HOH 1 301 1 HOH HOH A . G 3 HOH 2 302 2 HOH HOH A . G 3 HOH 3 303 3 HOH HOH A . G 3 HOH 4 304 4 HOH HOH A . G 3 HOH 5 305 5 HOH HOH A . G 3 HOH 6 306 6 HOH HOH A . G 3 HOH 7 307 7 HOH HOH A . G 3 HOH 8 308 8 HOH HOH A . G 3 HOH 9 309 9 HOH HOH A . G 3 HOH 10 310 10 HOH HOH A . G 3 HOH 11 311 11 HOH HOH A . G 3 HOH 12 312 12 HOH HOH A . G 3 HOH 13 313 13 HOH HOH A . G 3 HOH 14 314 14 HOH HOH A . G 3 HOH 15 315 15 HOH HOH A . G 3 HOH 16 316 16 HOH HOH A . G 3 HOH 17 317 17 HOH HOH A . G 3 HOH 18 318 18 HOH HOH A . G 3 HOH 19 319 19 HOH HOH A . G 3 HOH 20 320 20 HOH HOH A . G 3 HOH 21 321 21 HOH HOH A . G 3 HOH 22 322 22 HOH HOH A . G 3 HOH 23 323 23 HOH HOH A . G 3 HOH 24 324 24 HOH HOH A . G 3 HOH 25 325 25 HOH HOH A . G 3 HOH 26 326 26 HOH HOH A . G 3 HOH 27 327 27 HOH HOH A . G 3 HOH 28 328 28 HOH HOH A . G 3 HOH 29 329 29 HOH HOH A . G 3 HOH 30 330 30 HOH HOH A . G 3 HOH 31 331 31 HOH HOH A . G 3 HOH 32 332 32 HOH HOH A . G 3 HOH 33 333 33 HOH HOH A . G 3 HOH 34 334 34 HOH HOH A . G 3 HOH 35 335 35 HOH HOH A . G 3 HOH 36 336 36 HOH HOH A . G 3 HOH 37 337 37 HOH HOH A . G 3 HOH 38 338 38 HOH HOH A . G 3 HOH 39 339 40 HOH HOH A . G 3 HOH 40 340 41 HOH HOH A . G 3 HOH 41 341 42 HOH HOH A . G 3 HOH 42 342 43 HOH HOH A . G 3 HOH 43 343 44 HOH HOH A . G 3 HOH 44 344 45 HOH HOH A . G 3 HOH 45 345 46 HOH HOH A . G 3 HOH 46 346 47 HOH HOH A . G 3 HOH 47 347 48 HOH HOH A . G 3 HOH 48 348 51 HOH HOH A . G 3 HOH 49 349 52 HOH HOH A . G 3 HOH 50 350 53 HOH HOH A . G 3 HOH 51 351 54 HOH HOH A . G 3 HOH 52 352 56 HOH HOH A . G 3 HOH 53 353 59 HOH HOH A . G 3 HOH 54 354 60 HOH HOH A . G 3 HOH 55 355 62 HOH HOH A . G 3 HOH 56 356 63 HOH HOH A . G 3 HOH 57 357 65 HOH HOH A . G 3 HOH 58 358 66 HOH HOH A . G 3 HOH 59 359 68 HOH HOH A . G 3 HOH 60 360 69 HOH HOH A . G 3 HOH 61 361 71 HOH HOH A . G 3 HOH 62 362 72 HOH HOH A . G 3 HOH 63 363 73 HOH HOH A . G 3 HOH 64 364 74 HOH HOH A . G 3 HOH 65 365 80 HOH HOH A . G 3 HOH 66 366 81 HOH HOH A . G 3 HOH 67 367 84 HOH HOH A . G 3 HOH 68 368 85 HOH HOH A . G 3 HOH 69 369 86 HOH HOH A . G 3 HOH 70 370 87 HOH HOH A . G 3 HOH 71 371 88 HOH HOH A . G 3 HOH 72 372 89 HOH HOH A . G 3 HOH 73 373 91 HOH HOH A . G 3 HOH 74 374 93 HOH HOH A . G 3 HOH 75 375 94 HOH HOH A . G 3 HOH 76 376 98 HOH HOH A . G 3 HOH 77 377 99 HOH HOH A . G 3 HOH 78 378 101 HOH HOH A . G 3 HOH 79 379 103 HOH HOH A . G 3 HOH 80 380 104 HOH HOH A . G 3 HOH 81 381 105 HOH HOH A . G 3 HOH 82 382 106 HOH HOH A . G 3 HOH 83 383 114 HOH HOH A . G 3 HOH 84 384 115 HOH HOH A . G 3 HOH 85 385 116 HOH HOH A . G 3 HOH 86 386 118 HOH HOH A . G 3 HOH 87 387 125 HOH HOH A . G 3 HOH 88 388 127 HOH HOH A . G 3 HOH 89 389 130 HOH HOH A . G 3 HOH 90 390 134 HOH HOH A . G 3 HOH 91 391 140 HOH HOH A . G 3 HOH 92 392 168 HOH HOH A . G 3 HOH 93 393 171 HOH HOH A . G 3 HOH 94 394 175 HOH HOH A . G 3 HOH 95 395 181 HOH HOH A . G 3 HOH 96 396 209 HOH HOH A . G 3 HOH 97 397 210 HOH HOH A . G 3 HOH 98 398 212 HOH HOH A . G 3 HOH 99 399 213 HOH HOH A . G 3 HOH 100 400 220 HOH HOH A . G 3 HOH 101 401 221 HOH HOH A . G 3 HOH 102 402 222 HOH HOH A . G 3 HOH 103 403 225 HOH HOH A . G 3 HOH 104 404 229 HOH HOH A . G 3 HOH 105 405 235 HOH HOH A . G 3 HOH 106 406 237 HOH HOH A . G 3 HOH 107 407 238 HOH HOH A . G 3 HOH 108 408 239 HOH HOH A . G 3 HOH 109 409 253 HOH HOH A . G 3 HOH 110 410 256 HOH HOH A . G 3 HOH 111 411 258 HOH HOH A . G 3 HOH 112 412 259 HOH HOH A . G 3 HOH 113 413 262 HOH HOH A . G 3 HOH 114 414 264 HOH HOH A . G 3 HOH 115 415 265 HOH HOH A . G 3 HOH 116 416 267 HOH HOH A . G 3 HOH 117 417 268 HOH HOH A . G 3 HOH 118 418 269 HOH HOH A . G 3 HOH 119 419 273 HOH HOH A . G 3 HOH 120 420 276 HOH HOH A . G 3 HOH 121 421 277 HOH HOH A . G 3 HOH 122 422 288 HOH HOH A . G 3 HOH 123 423 292 HOH HOH A . G 3 HOH 124 424 299 HOH HOH A . G 3 HOH 125 425 305 HOH HOH A . G 3 HOH 126 426 307 HOH HOH A . G 3 HOH 127 427 308 HOH HOH A . G 3 HOH 128 428 309 HOH HOH A . G 3 HOH 129 429 310 HOH HOH A . G 3 HOH 130 430 311 HOH HOH A . G 3 HOH 131 431 312 HOH HOH A . G 3 HOH 132 432 313 HOH HOH A . G 3 HOH 133 433 315 HOH HOH A . G 3 HOH 134 434 316 HOH HOH A . G 3 HOH 135 435 318 HOH HOH A . G 3 HOH 136 436 319 HOH HOH A . G 3 HOH 137 437 320 HOH HOH A . G 3 HOH 138 438 321 HOH HOH A . G 3 HOH 139 439 322 HOH HOH A . G 3 HOH 140 440 323 HOH HOH A . G 3 HOH 141 441 324 HOH HOH A . G 3 HOH 142 442 325 HOH HOH A . G 3 HOH 143 443 326 HOH HOH A . G 3 HOH 144 444 328 HOH HOH A . G 3 HOH 145 445 329 HOH HOH A . G 3 HOH 146 446 331 HOH HOH A . G 3 HOH 147 447 332 HOH HOH A . G 3 HOH 148 448 333 HOH HOH A . G 3 HOH 149 449 334 HOH HOH A . G 3 HOH 150 450 335 HOH HOH A . G 3 HOH 151 451 336 HOH HOH A . G 3 HOH 152 452 337 HOH HOH A . G 3 HOH 153 453 338 HOH HOH A . G 3 HOH 154 454 339 HOH HOH A . G 3 HOH 155 455 340 HOH HOH A . G 3 HOH 156 456 341 HOH HOH A . G 3 HOH 157 457 342 HOH HOH A . G 3 HOH 158 458 343 HOH HOH A . G 3 HOH 159 459 344 HOH HOH A . G 3 HOH 160 460 345 HOH HOH A . G 3 HOH 161 461 346 HOH HOH A . G 3 HOH 162 462 347 HOH HOH A . G 3 HOH 163 463 348 HOH HOH A . G 3 HOH 164 464 349 HOH HOH A . G 3 HOH 165 465 350 HOH HOH A . G 3 HOH 166 466 351 HOH HOH A . G 3 HOH 167 467 352 HOH HOH A . G 3 HOH 168 468 353 HOH HOH A . G 3 HOH 169 469 354 HOH HOH A . G 3 HOH 170 470 355 HOH HOH A . G 3 HOH 171 471 356 HOH HOH A . G 3 HOH 172 472 357 HOH HOH A . G 3 HOH 173 473 358 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 5 A MSE 5 ? MET SELENOMETHIONINE 2 A MSE 38 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 44 A MSE 44 ? MET SELENOMETHIONINE 4 A MSE 124 A MSE 124 ? MET SELENOMETHIONINE 5 A MSE 129 A MSE 129 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-25 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2012-09-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' '(phenix.refine: 1.5_2)' ? 2 PHENIX refinement '(phenix.refine: 1.5_2)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing 1.5_2 ? 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #