HEADER DNA BINDING PROTEIN 10-JUL-12 4G12 TITLE CRYSTAL STRUCTURE OF PUTATIVE TETR FAMILY TRANSCRIPTIONAL REGULATOR, TITLE 2 FAD35R, FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR- COMPND 3 FAMILY); COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: FAD35R; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RA; SOURCE 5 GENE: RV2506; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OHM FOLD, FATTY ACID BINDING DOMAIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,B.A.MANJASETTY,V.SINGH,M.MITTAL,S.KUMARAN REVDAT 2 15-OCT-14 4G12 1 REMARK REVDAT 1 10-JUL-13 4G12 0 JRNL AUTH A.K.SINGH,B.A.MANJASETTY,V.SINGH,M.MITTAL,S.KUMARAN JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TETR FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR, FAD35R, FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 7538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 11.100 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 465 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.566 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.390 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 54.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2901 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1968 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3928 ; 0.862 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4739 ; 0.817 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 4.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;27.766 ;21.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;15.685 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.956 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3298 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 632 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4869 ; 2.733 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4831 ; 9.670 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4643 8.7615 32.2302 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1863 REMARK 3 T33: 0.1371 T12: -0.0135 REMARK 3 T13: 0.0193 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.1217 L22: 2.2568 REMARK 3 L33: 2.1293 L12: 0.5001 REMARK 3 L13: -0.4662 L23: 0.9904 REMARK 3 S TENSOR REMARK 3 S11: -0.3557 S12: 0.0166 S13: 0.0208 REMARK 3 S21: -0.2849 S22: 0.4501 S23: 0.0337 REMARK 3 S31: -0.0298 S32: 0.2969 S33: -0.0944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 215 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8304 31.0964 32.1686 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1038 REMARK 3 T33: 0.1238 T12: 0.0435 REMARK 3 T13: -0.0076 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.0353 L22: 2.4325 REMARK 3 L33: 1.7280 L12: 0.8483 REMARK 3 L13: 0.2543 L23: -0.8969 REMARK 3 S TENSOR REMARK 3 S11: -0.3355 S12: 0.0109 S13: 0.0251 REMARK 3 S21: -0.0967 S22: 0.2990 S23: -0.0178 REMARK 3 S31: -0.3323 S32: -0.2076 S33: 0.0365 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4G12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB073603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97755 REMARK 200 MONOCHROMATOR : CHANEL CUT SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15712 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : 0.52900 REMARK 200 FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX SUITE (CCP4) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-SODIUM CITRATE, 0.1M TRIS-HCL REMARK 280 PH 8.5, 30%(V/V) PEG400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.41800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.41800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 PRO A 13 REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 ASN A 17 REMARK 465 ARG A 18 REMARK 465 ARG A 19 REMARK 465 SER A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 LYS A 23 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 ARG B 9 REMARK 465 PRO B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 PRO B 13 REMARK 465 GLU B 14 REMARK 465 ALA B 15 REMARK 465 THR B 16 REMARK 465 ASN B 17 REMARK 465 ARG B 18 REMARK 465 ARG B 19 REMARK 465 SER B 20 REMARK 465 GLN B 21 REMARK 465 LEU B 22 REMARK 465 LYS B 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 61 CB REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 68 CG OD1 ND2 REMARK 470 LYS A 69 CB CG CD CE NZ REMARK 470 ASP A 187 CB CG OD1 OD2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 29 CG CD OE1 NE2 REMARK 470 TYR B 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 68 CG OD1 ND2 REMARK 470 LYS B 69 CB CG CD CE NZ REMARK 470 ASP B 187 CB CG OD1 OD2 REMARK 470 SER B 188 CB OG REMARK 470 LYS B 189 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 201 CD - NE - CZ ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 58 -179.05 -62.46 REMARK 500 TYR A 63 33.47 -71.35 REMARK 500 LYS A 69 -70.38 83.02 REMARK 500 ARG A 125 -63.21 -99.04 REMARK 500 SER A 182 -58.19 -123.61 REMARK 500 ASP A 187 -109.25 173.61 REMARK 500 GLU B 40 -72.44 -69.29 REMARK 500 SER B 58 -173.29 -63.68 REMARK 500 TYR B 63 30.38 -73.53 REMARK 500 LYS B 69 -64.97 82.10 REMARK 500 GLU B 116 51.22 -100.11 REMARK 500 SER B 182 -36.27 -142.12 REMARK 500 ASP B 187 -105.39 -172.71 REMARK 500 SER B 188 20.01 48.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 201 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 DBREF 4G12 A 1 215 UNP O06169 O06169_MYCTU 1 215 DBREF 4G12 B 1 215 UNP O06169 O06169_MYCTU 1 215 SEQRES 1 A 215 MSE THR ALA SER ALA PRO ASP GLY ARG PRO GLY GLN PRO SEQRES 2 A 215 GLU ALA THR ASN ARG ARG SER GLN LEU LYS SER ASP ARG SEQRES 3 A 215 ARG PHE GLN LEU LEU ALA ALA ALA GLU ARG LEU PHE ALA SEQRES 4 A 215 GLU ARG GLY PHE LEU ALA VAL ARG LEU GLU ASP ILE GLY SEQRES 5 A 215 ALA ALA ALA GLY VAL SER GLY PRO ALA ILE TYR ARG HIS SEQRES 6 A 215 PHE PRO ASN LYS GLU SER LEU LEU VAL GLU LEU LEU VAL SEQRES 7 A 215 GLY VAL SER ALA ARG LEU LEU ALA GLY ALA ARG ASP VAL SEQRES 8 A 215 THR THR ARG SER ALA ASN LEU ALA ALA ALA LEU ASP GLY SEQRES 9 A 215 LEU ILE GLU PHE HIS LEU ASP PHE ALA LEU GLY GLU ALA SEQRES 10 A 215 ASP LEU ILE ARG ILE GLN ASP ARG ASP LEU ALA HIS LEU SEQRES 11 A 215 PRO ALA VAL ALA GLU ARG GLN VAL ARG LYS ALA GLN ARG SEQRES 12 A 215 GLN TYR VAL GLU VAL TRP VAL GLY VAL LEU ARG GLU LEU SEQRES 13 A 215 ASN PRO GLY LEU ALA GLU ALA ASP ALA ARG LEU MSE ALA SEQRES 14 A 215 HIS ALA VAL PHE GLY LEU LEU ASN SER THR PRO HIS SER SEQRES 15 A 215 MSE LYS ALA ALA ASP SER LYS PRO ALA ARG THR VAL ARG SEQRES 16 A 215 ALA ARG ALA VAL LEU ARG ALA MSE THR VAL ALA ALA LEU SEQRES 17 A 215 SER ALA ALA ASP ARG CYS LEU SEQRES 1 B 215 MSE THR ALA SER ALA PRO ASP GLY ARG PRO GLY GLN PRO SEQRES 2 B 215 GLU ALA THR ASN ARG ARG SER GLN LEU LYS SER ASP ARG SEQRES 3 B 215 ARG PHE GLN LEU LEU ALA ALA ALA GLU ARG LEU PHE ALA SEQRES 4 B 215 GLU ARG GLY PHE LEU ALA VAL ARG LEU GLU ASP ILE GLY SEQRES 5 B 215 ALA ALA ALA GLY VAL SER GLY PRO ALA ILE TYR ARG HIS SEQRES 6 B 215 PHE PRO ASN LYS GLU SER LEU LEU VAL GLU LEU LEU VAL SEQRES 7 B 215 GLY VAL SER ALA ARG LEU LEU ALA GLY ALA ARG ASP VAL SEQRES 8 B 215 THR THR ARG SER ALA ASN LEU ALA ALA ALA LEU ASP GLY SEQRES 9 B 215 LEU ILE GLU PHE HIS LEU ASP PHE ALA LEU GLY GLU ALA SEQRES 10 B 215 ASP LEU ILE ARG ILE GLN ASP ARG ASP LEU ALA HIS LEU SEQRES 11 B 215 PRO ALA VAL ALA GLU ARG GLN VAL ARG LYS ALA GLN ARG SEQRES 12 B 215 GLN TYR VAL GLU VAL TRP VAL GLY VAL LEU ARG GLU LEU SEQRES 13 B 215 ASN PRO GLY LEU ALA GLU ALA ASP ALA ARG LEU MSE ALA SEQRES 14 B 215 HIS ALA VAL PHE GLY LEU LEU ASN SER THR PRO HIS SER SEQRES 15 B 215 MSE LYS ALA ALA ASP SER LYS PRO ALA ARG THR VAL ARG SEQRES 16 B 215 ALA ARG ALA VAL LEU ARG ALA MSE THR VAL ALA ALA LEU SEQRES 17 B 215 SER ALA ALA ASP ARG CYS LEU MODRES 4G12 MSE A 168 MET SELENOMETHIONINE MODRES 4G12 MSE A 183 MET SELENOMETHIONINE MODRES 4G12 MSE A 203 MET SELENOMETHIONINE MODRES 4G12 MSE B 168 MET SELENOMETHIONINE MODRES 4G12 MSE B 183 MET SELENOMETHIONINE MODRES 4G12 MSE B 203 MET SELENOMETHIONINE HET MSE A 168 8 HET MSE A 183 8 HET MSE A 203 8 HET MSE B 168 8 HET MSE B 183 8 HET MSE B 203 8 HET GOL A 301 6 HET GOL B 301 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) HELIX 1 1 ARG A 26 ARG A 41 1 16 HELIX 2 2 LEU A 48 GLY A 56 1 9 HELIX 3 3 GLY A 59 HIS A 65 5 7 HELIX 4 4 LYS A 69 SER A 95 1 27 HELIX 5 5 ASN A 97 GLU A 116 1 20 HELIX 6 6 GLU A 116 ASP A 126 1 11 HELIX 7 7 PRO A 131 ASN A 157 1 27 HELIX 8 8 ALA A 161 ASN A 177 1 17 HELIX 9 9 SER A 178 SER A 182 5 5 HELIX 10 10 LYS A 189 LEU A 215 1 27 HELIX 11 11 ARG B 26 ARG B 41 1 16 HELIX 12 12 ARG B 47 GLY B 56 1 10 HELIX 13 13 GLY B 59 HIS B 65 5 7 HELIX 14 14 LYS B 69 SER B 95 1 27 HELIX 15 15 ASN B 97 GLU B 116 1 20 HELIX 16 16 GLU B 116 LEU B 127 1 12 HELIX 17 17 PRO B 131 ASN B 157 1 27 HELIX 18 18 ALA B 161 ASN B 177 1 17 HELIX 19 19 SER B 178 SER B 182 5 5 HELIX 20 20 LYS B 189 LEU B 215 1 27 LINK C LEU A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N ALA A 169 1555 1555 1.33 LINK C SER A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N LYS A 184 1555 1555 1.33 LINK C ALA A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N THR A 204 1555 1555 1.33 LINK C LEU B 167 N MSE B 168 1555 1555 1.33 LINK C MSE B 168 N ALA B 169 1555 1555 1.33 LINK C SER B 182 N MSE B 183 1555 1555 1.33 LINK C MSE B 183 N LYS B 184 1555 1555 1.33 LINK C ALA B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N THR B 204 1555 1555 1.33 CISPEP 1 PRO A 67 ASN A 68 0 -1.29 CISPEP 2 PRO B 67 ASN B 68 0 -0.86 SITE 1 AC1 2 GLN A 123 ASN A 177 SITE 1 AC2 3 GLN B 123 TYR B 145 ASN B 177 CRYST1 76.836 83.211 95.328 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010490 0.00000