HEADER HYDROLASE 11-JUL-12 4G1P TITLE STRUCTURAL AND MECHANISTIC BASIS OF SUBSTRATE RECOGNITION BY NOVEL DI- TITLE 2 PEPTIDASE DUG1P FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYS-GLY METALLODIPEPTIDASE DUG1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEFICIENT IN UTILIZATION OF GLUTATHIONE PROTEIN 1, GSH COMPND 5 DEGRADOSOMAL COMPLEX SUBUNIT DUG1; COMPND 6 EC: 3.4.13.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: DUG1P; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: IPTG INDUCIBLE VECTOR; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS DI-NUCLEAR PEPTIDASES, M20 FAMILY METALLO-PEPTIDASES, HYDROLASE, KEYWDS 2 ALPHA/BETA SCAFFOLD, N-TERMINAL CATALYTIC DOMAIN/C-TERMINAL LID KEYWDS 3 DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,M.SINGH,V.K.PANDYA,V.SINGH,M.MITTAL,S.KUMARAN REVDAT 3 08-NOV-23 4G1P 1 REMARK SEQADV LINK REVDAT 2 17-SEP-14 4G1P 1 REMARK REVDAT 1 17-JUL-13 4G1P 0 JRNL AUTH A.K.SINGH,M.SINGH,V.K.PANDYA,V.SINGH,M.MITTAL,S.KUMARAN JRNL TITL STRUCTURAL AND MECHANISTIC BASIS OF SUBSTRATE RECOGNITION BY JRNL TITL 2 NOVEL DI-PEPTIDASE DUG1P FROM SACCROMYCES CEREVESIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7312 - 5.2688 0.99 2785 147 0.1691 0.1979 REMARK 3 2 5.2688 - 4.1952 1.00 2657 140 0.1406 0.1634 REMARK 3 3 4.1952 - 3.6688 0.97 2543 133 0.1795 0.2184 REMARK 3 4 3.6688 - 3.3351 0.97 2523 133 0.2054 0.2751 REMARK 3 5 3.3351 - 3.0970 1.00 2587 136 0.1849 0.2494 REMARK 3 6 3.0970 - 2.9150 1.00 2560 135 0.1975 0.2376 REMARK 3 7 2.9150 - 2.7695 1.00 2559 135 0.2109 0.2744 REMARK 3 8 2.7695 - 2.6492 1.00 2561 135 0.2360 0.3110 REMARK 3 9 2.6492 - 2.5474 0.97 2487 131 0.2582 0.2981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3791 REMARK 3 ANGLE : 1.135 5125 REMARK 3 CHIRALITY : 0.072 573 REMARK 3 PLANARITY : 0.006 657 REMARK 3 DIHEDRAL : 14.734 1402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.547 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.21600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.21 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2ZOF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMSO4, 0.1 M TRI-NA CITRATE PH REMARK 280 5.6, 1.0 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.53467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.76733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.15100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.38367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 146.91833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.53467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 58.76733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.38367 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.15100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 146.91833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.76733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 73 REMARK 465 ASN A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 71 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 70 C - N - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 PRO A 72 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 ASN A 396 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 137.74 -25.35 REMARK 500 HIS A 3 54.00 12.57 REMARK 500 SER A 4 82.37 50.22 REMARK 500 ALA A 31 64.26 -67.68 REMARK 500 SER A 56 -170.84 -69.17 REMARK 500 PRO A 70 -143.59 -132.99 REMARK 500 PRO A 71 -128.00 83.87 REMARK 500 PRO A 76 49.98 -85.01 REMARK 500 SER A 90 53.11 -147.70 REMARK 500 ASP A 138 20.40 -141.13 REMARK 500 LYS A 177 -8.98 73.94 REMARK 500 ASP A 200 34.02 -155.55 REMARK 500 ASN A 201 -158.04 -151.82 REMARK 500 ASP A 284 14.92 83.61 REMARK 500 LYS A 299 61.93 -106.03 REMARK 500 ALA A 327 -156.75 -113.95 REMARK 500 ASP A 352 58.40 -112.83 REMARK 500 PRO A 394 34.63 -79.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 DI-PEPTIDE, GLY-CYS IS INTRINSIC DIPEPTIDE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 137 OD2 REMARK 620 2 GLU A 172 OE2 98.8 REMARK 620 3 GLU A 172 OE1 144.8 54.3 REMARK 620 4 HIS A 450 NE2 94.3 119.6 83.3 REMARK 620 5 GLY A 503 N 95.4 154.3 118.5 80.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR LINKED RESIDUES A 503 to 504 DBREF 4G1P A 1 481 UNP P43616 DUG1_YEAST 1 481 SEQADV 4G1P HIS A 482 UNP P43616 EXPRESSION TAG SEQADV 4G1P HIS A 483 UNP P43616 EXPRESSION TAG SEQADV 4G1P HIS A 484 UNP P43616 EXPRESSION TAG SEQADV 4G1P HIS A 485 UNP P43616 EXPRESSION TAG SEQADV 4G1P HIS A 486 UNP P43616 EXPRESSION TAG SEQADV 4G1P HIS A 487 UNP P43616 EXPRESSION TAG SEQRES 1 A 487 MET SER HIS SER LEU THR SER VAL PHE GLN LYS ILE ASP SEQRES 2 A 487 SER LEU LYS PRO GLN PHE PHE SER ARG LEU THR LYS ALA SEQRES 3 A 487 ILE GLN ILE PRO ALA VAL SER SER ASP GLU SER LEU ARG SEQRES 4 A 487 SER LYS VAL PHE ASP LYS ALA LYS PHE ILE SER GLU GLN SEQRES 5 A 487 LEU SER GLN SER GLY PHE HIS ASP ILE LYS MET VAL ASP SEQRES 6 A 487 LEU GLY ILE GLN PRO PRO PRO ILE SER THR PRO ASN LEU SEQRES 7 A 487 SER LEU PRO PRO VAL ILE LEU SER ARG PHE GLY SER ASP SEQRES 8 A 487 PRO SER LYS LYS THR VAL LEU VAL TYR GLY HIS TYR ASP SEQRES 9 A 487 VAL GLN PRO ALA GLN LEU GLU ASP GLY TRP ASP THR GLU SEQRES 10 A 487 PRO PHE LYS LEU VAL ILE ASP GLU ALA LYS GLY ILE MET SEQRES 11 A 487 LYS GLY ARG GLY VAL THR ASP ASP THR GLY PRO LEU LEU SEQRES 12 A 487 SER TRP ILE ASN VAL VAL ASP ALA PHE LYS ALA SER GLY SEQRES 13 A 487 GLN GLU PHE PRO VAL ASN LEU VAL THR CYS PHE GLU GLY SEQRES 14 A 487 MET GLU GLU SER GLY SER LEU LYS LEU ASP GLU LEU ILE SEQRES 15 A 487 LYS LYS GLU ALA ASN GLY TYR PHE LYS GLY VAL ASP ALA SEQRES 16 A 487 VAL CYS ILE SER ASP ASN TYR TRP LEU GLY THR LYS LYS SEQRES 17 A 487 PRO VAL LEU THR TYR GLY LEU ARG GLY CYS ASN TYR TYR SEQRES 18 A 487 GLN THR ILE ILE GLU GLY PRO SER ALA ASP LEU HIS SER SEQRES 19 A 487 GLY ILE PHE GLY GLY VAL VAL ALA GLU PRO MET ILE ASP SEQRES 20 A 487 LEU MET GLN VAL LEU GLY SER LEU VAL ASP SER LYS GLY SEQRES 21 A 487 LYS ILE LEU ILE ASP GLY ILE ASP GLU MET VAL ALA PRO SEQRES 22 A 487 LEU THR GLU LYS GLU LYS ALA LEU TYR LYS ASP ILE GLU SEQRES 23 A 487 PHE SER VAL GLU GLU LEU ASN ALA ALA THR GLY SER LYS SEQRES 24 A 487 THR SER LEU TYR ASP LYS LYS GLU ASP ILE LEU MET HIS SEQRES 25 A 487 ARG TRP ARG TYR PRO SER LEU SER ILE HIS GLY VAL GLU SEQRES 26 A 487 GLY ALA PHE SER ALA GLN GLY ALA LYS THR VAL ILE PRO SEQRES 27 A 487 ALA LYS VAL PHE GLY LYS PHE SER ILE ARG THR VAL PRO SEQRES 28 A 487 ASP MET ASP SER GLU LYS LEU THR SER LEU VAL GLN LYS SEQRES 29 A 487 HIS CYS ASP ALA LYS PHE LYS SER LEU ASN SER PRO ASN SEQRES 30 A 487 LYS CYS ARG THR GLU LEU ILE HIS ASP GLY ALA TYR TRP SEQRES 31 A 487 VAL SER ASP PRO PHE ASN ALA GLN PHE THR ALA ALA LYS SEQRES 32 A 487 LYS ALA THR LYS LEU VAL TYR GLY VAL ASP PRO ASP PHE SEQRES 33 A 487 THR ARG GLU GLY GLY SER ILE PRO ILE THR LEU THR PHE SEQRES 34 A 487 GLN ASP ALA LEU ASN THR SER VAL LEU LEU LEU PRO MET SEQRES 35 A 487 GLY ARG GLY ASP ASP GLY ALA HIS SER ILE ASN GLU LYS SEQRES 36 A 487 LEU ASP ILE SER ASN PHE VAL GLY GLY MET LYS THR MET SEQRES 37 A 487 ALA ALA TYR LEU GLN TYR TYR SER GLU SER PRO GLU ASN SEQRES 38 A 487 HIS HIS HIS HIS HIS HIS HET ZN A 501 1 HET ZN A 502 1 HET GLY A 503 4 HET CYS A 504 6 HETNAM ZN ZINC ION HETNAM GLY GLYCINE HETNAM CYS CYSTEINE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 GLY C2 H5 N O2 FORMUL 5 CYS C3 H7 N O2 S FORMUL 6 HOH *168(H2 O) HELIX 1 1 SER A 4 LEU A 15 1 12 HELIX 2 2 LEU A 15 ILE A 29 1 15 HELIX 3 3 ASP A 35 SER A 37 5 3 HELIX 4 4 LEU A 38 SER A 56 1 19 HELIX 5 5 GLN A 109 GLY A 113 5 5 HELIX 6 6 ASP A 138 SER A 155 1 18 HELIX 7 7 MET A 170 GLY A 174 5 5 HELIX 8 8 LYS A 177 ALA A 186 1 10 HELIX 9 9 GLU A 243 GLY A 253 1 11 HELIX 10 10 GLY A 266 VAL A 271 1 6 HELIX 11 11 THR A 275 TYR A 282 1 8 HELIX 12 12 SER A 288 GLY A 297 1 10 HELIX 13 13 LYS A 305 ARG A 315 1 11 HELIX 14 14 ASP A 354 SER A 372 1 19 HELIX 15 15 ASN A 396 GLY A 411 1 16 HELIX 16 16 ILE A 425 ASN A 434 1 10 HELIX 17 17 ILE A 458 SER A 478 1 21 SHEET 1 A 6 HIS A 59 VAL A 64 0 SHEET 2 A 6 VAL A 83 PHE A 88 -1 O ARG A 87 N HIS A 59 SHEET 3 A 6 ASN A 162 GLU A 168 -1 O PHE A 167 N ILE A 84 SHEET 4 A 6 THR A 96 HIS A 102 1 N VAL A 99 O VAL A 164 SHEET 5 A 6 ALA A 195 ILE A 198 1 O ALA A 195 N LEU A 98 SHEET 6 A 6 VAL A 437 LEU A 439 1 O LEU A 438 N ILE A 198 SHEET 1 B 3 VAL A 122 ASP A 124 0 SHEET 2 B 3 ILE A 129 LYS A 131 -1 O ILE A 129 N ASP A 124 SHEET 3 B 3 LYS A 455 ASP A 457 -1 O LEU A 456 N MET A 130 SHEET 1 C 3 TRP A 390 VAL A 391 0 SHEET 2 C 3 VAL A 210 LEU A 215 -1 N LEU A 215 O TRP A 390 SHEET 3 C 3 ASP A 415 GLU A 419 1 O THR A 417 N LEU A 211 SHEET 1 D 4 SER A 318 GLU A 325 0 SHEET 2 D 4 LYS A 340 THR A 349 -1 O PHE A 342 N GLU A 325 SHEET 3 D 4 GLY A 217 GLU A 226 -1 N TYR A 221 O PHE A 345 SHEET 4 D 4 LYS A 378 GLY A 387 -1 O ILE A 384 N TYR A 220 SHEET 1 E 2 LEU A 232 HIS A 233 0 SHEET 2 E 2 VAL A 336 ILE A 337 -1 O ILE A 337 N LEU A 232 LINK N GLY A 503 CA GLY A 503 1555 1555 1.45 LINK CA GLY A 503 C GLY A 503 1555 1555 1.51 LINK C GLY A 503 O GLY A 503 1555 1555 1.23 LINK C GLY A 503 N CYS A 504 1555 1555 1.33 LINK N CYS A 504 CA CYS A 504 1555 1555 1.45 LINK CA CYS A 504 C CYS A 504 1555 1555 1.53 LINK C CYS A 504 O CYS A 504 1555 1555 1.23 LINK CA CYS A 504 CB CYS A 504 1555 1555 1.53 LINK CB CYS A 504 SG CYS A 504 1555 1555 1.77 LINK OD2 ASP A 137 ZN ZN A 501 1555 1555 2.02 LINK OE2 GLU A 172 ZN ZN A 501 1555 1555 2.08 LINK OE1 GLU A 172 ZN ZN A 501 1555 1555 2.61 LINK NE2 HIS A 450 ZN ZN A 501 1555 1555 2.03 LINK ZN ZN A 501 N GLY A 503 1555 1555 2.59 CISPEP 1 ASP A 137 ASP A 138 0 9.40 CISPEP 2 PRO A 351 ASP A 352 0 1.14 SITE 1 AC1 4 ASP A 137 GLU A 172 HIS A 450 GLY A 503 SITE 1 AC2 3 ASP A 137 ASP A 200 GLY A 503 SITE 1 AC3 13 ASP A 137 GLU A 171 GLU A 172 CYS A 218 SITE 2 AC3 13 HIS A 233 THR A 335 ARG A 348 HIS A 385 SITE 3 AC3 13 SER A 422 HIS A 450 ZN A 501 ZN A 502 SITE 4 AC3 13 HOH A 632 CRYST1 119.132 119.132 176.302 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008394 0.004846 0.000000 0.00000 SCALE2 0.000000 0.009693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005672 0.00000