HEADER HYDROLASE/HYDROLASE INHIBITOR 12-JUL-12 4G2J TITLE HUMAN PDE9 IN COMPLEX WITH SELECTIVE COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH AFFINITY CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 9A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 242-566; COMPND 6 EC: 3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE9A KEYWDS PHOSPHODIESTERASE, INHIBITORS, CGMP->GMP, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU REVDAT 2 28-FEB-24 4G2J 1 REMARK SEQADV LINK REVDAT 1 29-MAY-13 4G2J 0 JRNL AUTH M.M.CLAFFEY,C.J.HELAL,P.R.VERHOEST,Z.KANG,K.S.FORS,S.JUNG, JRNL AUTH 2 J.ZHONG,M.W.BUNDESMANN,X.HOU,S.LUI,R.J.KLEIMAN, JRNL AUTH 3 M.VANASE-FRAWLEY,A.W.SCHMIDT,F.MENNITI,C.J.SCHMIDT, JRNL AUTH 4 W.E.HOFFMAN,M.HAJOS,L.MCDOWELL,R.E.O'CONNOR, JRNL AUTH 5 M.MACDOUGALL-MURPHY,K.R.FONSECA,S.L.BECKER,F.R.NELSON, JRNL AUTH 6 S.LIRAS JRNL TITL APPLICATION OF STRUCTURE-BASED DRUG DESIGN AND PARALLEL JRNL TITL 2 CHEMISTRY TO IDENTIFY SELECTIVE, BRAIN PENETRANT, IN VIVO JRNL TITL 3 ACTIVE PHOSPHODIESTERASE 9A INHIBITORS. JRNL REF J.MED.CHEM. V. 55 9055 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 23025719 JRNL DOI 10.1021/JM3009635 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.170 REMARK 3 FREE R VALUE TEST SET COUNT : 5948 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4236 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2334 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3834 REMARK 3 BIN R VALUE (WORKING SET) : 0.2323 REMARK 3 BIN FREE R VALUE : 0.2437 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 402 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79190 REMARK 3 B22 (A**2) : -1.79190 REMARK 3 B33 (A**2) : 3.58370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.335 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.196 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5666 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7728 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1994 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 152 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 840 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5666 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 718 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6903 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|181 - A|505 } REMARK 3 ORIGIN FOR THE GROUP (A): 84.3590 45.6660 45.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: -0.1095 REMARK 3 T33: -0.1139 T12: -0.0080 REMARK 3 T13: -0.0032 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.8879 L22: 0.9503 REMARK 3 L33: 1.2405 L12: -0.4866 REMARK 3 L13: 0.0414 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: -0.0583 S13: 0.0190 REMARK 3 S21: 0.0154 S22: -0.0110 S23: 0.0905 REMARK 3 S31: -0.1286 S32: -0.0365 S33: -0.0788 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|181 - B|505 } REMARK 3 ORIGIN FOR THE GROUP (A): 92.7750 31.8550 7.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0012 REMARK 3 T33: -0.0876 T12: 0.0465 REMARK 3 T13: 0.0140 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.7468 L22: 1.4579 REMARK 3 L33: 1.7907 L12: -0.1991 REMARK 3 L13: 0.2775 L23: -0.3881 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.1371 S13: -0.0931 REMARK 3 S21: -0.0688 S22: -0.0267 S23: -0.0324 REMARK 3 S31: 0.2024 S32: 0.1280 S33: -0.0167 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.03750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.84400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.84400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.51875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.84400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.84400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 202.55625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.84400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.84400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.51875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.84400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.84400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 202.55625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.03750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 155.53200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -51.84400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 67.51875 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 506 REMARK 465 LYS B 506 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 319 60.62 32.81 REMARK 500 ASN A 381 70.77 -160.45 REMARK 500 SER B 319 60.16 32.94 REMARK 500 ASN B 381 71.20 -160.35 REMARK 500 GLN B 504 -75.14 -89.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 256 NE2 REMARK 620 2 HIS A 292 NE2 89.1 REMARK 620 3 ASP A 293 OD2 89.4 84.9 REMARK 620 4 ASP A 402 OD1 90.1 82.6 167.5 REMARK 620 5 HOH A1029 O 87.2 172.1 102.1 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 OD1 REMARK 620 2 HOH A1035 O 91.4 REMARK 620 3 HOH A1047 O 171.1 80.8 REMARK 620 4 HOH A1070 O 95.0 96.0 81.6 REMARK 620 5 HOH A1100 O 102.8 165.7 84.8 80.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 256 NE2 REMARK 620 2 HIS B 292 NE2 88.5 REMARK 620 3 ASP B 293 OD2 89.1 84.9 REMARK 620 4 ASP B 402 OD1 89.8 82.1 166.9 REMARK 620 5 HOH B1164 O 93.3 172.0 102.9 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 293 OD1 REMARK 620 2 HOH B1064 O 92.2 REMARK 620 3 HOH B1086 O 170.2 78.5 REMARK 620 4 HOH B1102 O 95.0 91.8 82.5 REMARK 620 5 HOH B1121 O 102.1 165.1 87.0 82.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WF A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WF B 903 DBREF 4G2J A 182 506 UNP O76083 PDE9A_HUMAN 242 566 DBREF 4G2J B 182 506 UNP O76083 PDE9A_HUMAN 242 566 SEQADV 4G2J GLY A 178 UNP O76083 EXPRESSION TAG SEQADV 4G2J SER A 179 UNP O76083 EXPRESSION TAG SEQADV 4G2J HIS A 180 UNP O76083 EXPRESSION TAG SEQADV 4G2J MET A 181 UNP O76083 EXPRESSION TAG SEQADV 4G2J GLY B 178 UNP O76083 EXPRESSION TAG SEQADV 4G2J SER B 179 UNP O76083 EXPRESSION TAG SEQADV 4G2J HIS B 180 UNP O76083 EXPRESSION TAG SEQADV 4G2J MET B 181 UNP O76083 EXPRESSION TAG SEQRES 1 A 329 GLY SER HIS MET THR TYR PRO LYS TYR LEU LEU SER PRO SEQRES 2 A 329 GLU THR ILE GLU ALA LEU ARG LYS PRO THR PHE ASP VAL SEQRES 3 A 329 TRP LEU TRP GLU PRO ASN GLU MET LEU SER CYS LEU GLU SEQRES 4 A 329 HIS MET TYR HIS ASP LEU GLY LEU VAL ARG ASP PHE SER SEQRES 5 A 329 ILE ASN PRO VAL THR LEU ARG ARG TRP LEU PHE CYS VAL SEQRES 6 A 329 HIS ASP ASN TYR ARG ASN ASN PRO PHE HIS ASN PHE ARG SEQRES 7 A 329 HIS CYS PHE CYS VAL ALA GLN MET MET TYR SER MET VAL SEQRES 8 A 329 TRP LEU CYS SER LEU GLN GLU LYS PHE SER GLN THR ASP SEQRES 9 A 329 ILE LEU ILE LEU MET THR ALA ALA ILE CYS HIS ASP LEU SEQRES 10 A 329 ASP HIS PRO GLY TYR ASN ASN THR TYR GLN ILE ASN ALA SEQRES 11 A 329 ARG THR GLU LEU ALA VAL ARG TYR ASN ASP ILE SER PRO SEQRES 12 A 329 LEU GLU ASN HIS HIS CYS ALA VAL ALA PHE GLN ILE LEU SEQRES 13 A 329 ALA GLU PRO GLU CYS ASN ILE PHE SER ASN ILE PRO PRO SEQRES 14 A 329 ASP GLY PHE LYS GLN ILE ARG GLN GLY MET ILE THR LEU SEQRES 15 A 329 ILE LEU ALA THR ASP MET ALA ARG HIS ALA GLU ILE MET SEQRES 16 A 329 ASP SER PHE LYS GLU LYS MET GLU ASN PHE ASP TYR SER SEQRES 17 A 329 ASN GLU GLU HIS MET THR LEU LEU LYS MET ILE LEU ILE SEQRES 18 A 329 LYS CYS CYS ASP ILE SER ASN GLU VAL ARG PRO MET GLU SEQRES 19 A 329 VAL ALA GLU PRO TRP VAL ASP CYS LEU LEU GLU GLU TYR SEQRES 20 A 329 PHE MET GLN SER ASP ARG GLU LYS SER GLU GLY LEU PRO SEQRES 21 A 329 VAL ALA PRO PHE MET ASP ARG ASP LYS VAL THR LYS ALA SEQRES 22 A 329 THR ALA GLN ILE GLY PHE ILE LYS PHE VAL LEU ILE PRO SEQRES 23 A 329 MET PHE GLU THR VAL THR LYS LEU PHE PRO MET VAL GLU SEQRES 24 A 329 GLU ILE MET LEU GLN PRO LEU TRP GLU SER ARG ASP ARG SEQRES 25 A 329 TYR GLU GLU LEU LYS ARG ILE ASP ASP ALA MET LYS GLU SEQRES 26 A 329 LEU GLN LYS LYS SEQRES 1 B 329 GLY SER HIS MET THR TYR PRO LYS TYR LEU LEU SER PRO SEQRES 2 B 329 GLU THR ILE GLU ALA LEU ARG LYS PRO THR PHE ASP VAL SEQRES 3 B 329 TRP LEU TRP GLU PRO ASN GLU MET LEU SER CYS LEU GLU SEQRES 4 B 329 HIS MET TYR HIS ASP LEU GLY LEU VAL ARG ASP PHE SER SEQRES 5 B 329 ILE ASN PRO VAL THR LEU ARG ARG TRP LEU PHE CYS VAL SEQRES 6 B 329 HIS ASP ASN TYR ARG ASN ASN PRO PHE HIS ASN PHE ARG SEQRES 7 B 329 HIS CYS PHE CYS VAL ALA GLN MET MET TYR SER MET VAL SEQRES 8 B 329 TRP LEU CYS SER LEU GLN GLU LYS PHE SER GLN THR ASP SEQRES 9 B 329 ILE LEU ILE LEU MET THR ALA ALA ILE CYS HIS ASP LEU SEQRES 10 B 329 ASP HIS PRO GLY TYR ASN ASN THR TYR GLN ILE ASN ALA SEQRES 11 B 329 ARG THR GLU LEU ALA VAL ARG TYR ASN ASP ILE SER PRO SEQRES 12 B 329 LEU GLU ASN HIS HIS CYS ALA VAL ALA PHE GLN ILE LEU SEQRES 13 B 329 ALA GLU PRO GLU CYS ASN ILE PHE SER ASN ILE PRO PRO SEQRES 14 B 329 ASP GLY PHE LYS GLN ILE ARG GLN GLY MET ILE THR LEU SEQRES 15 B 329 ILE LEU ALA THR ASP MET ALA ARG HIS ALA GLU ILE MET SEQRES 16 B 329 ASP SER PHE LYS GLU LYS MET GLU ASN PHE ASP TYR SER SEQRES 17 B 329 ASN GLU GLU HIS MET THR LEU LEU LYS MET ILE LEU ILE SEQRES 18 B 329 LYS CYS CYS ASP ILE SER ASN GLU VAL ARG PRO MET GLU SEQRES 19 B 329 VAL ALA GLU PRO TRP VAL ASP CYS LEU LEU GLU GLU TYR SEQRES 20 B 329 PHE MET GLN SER ASP ARG GLU LYS SER GLU GLY LEU PRO SEQRES 21 B 329 VAL ALA PRO PHE MET ASP ARG ASP LYS VAL THR LYS ALA SEQRES 22 B 329 THR ALA GLN ILE GLY PHE ILE LYS PHE VAL LEU ILE PRO SEQRES 23 B 329 MET PHE GLU THR VAL THR LYS LEU PHE PRO MET VAL GLU SEQRES 24 B 329 GLU ILE MET LEU GLN PRO LEU TRP GLU SER ARG ASP ARG SEQRES 25 B 329 TYR GLU GLU LEU LYS ARG ILE ASP ASP ALA MET LYS GLU SEQRES 26 B 329 LEU GLN LYS LYS HET ZN A 901 1 HET MG A 902 1 HET 0WF A 903 53 HET ZN B 901 1 HET MG B 902 1 HET 0WF B 903 53 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 0WF 1-CYCLOPENTYL-6-[(1R)-1-(3-PHENOXYAZETIDIN-1-YL)ETHYL]- HETNAM 2 0WF 1,5-DIHYDRO-4H-PYRAZOLO[3,4-D]PYRIMIDIN-4-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 0WF 2(C21 H25 N5 O2) FORMUL 9 HOH *367(H2 O) HELIX 1 1 SER A 189 LEU A 196 1 8 HELIX 2 2 ASP A 202 TRP A 206 5 5 HELIX 3 3 GLU A 207 LEU A 222 1 16 HELIX 4 4 GLY A 223 PHE A 228 1 6 HELIX 5 5 ASN A 231 ASN A 245 1 15 HELIX 6 6 ASN A 253 CYS A 271 1 19 HELIX 7 7 SER A 272 PHE A 277 1 6 HELIX 8 8 SER A 278 HIS A 292 1 15 HELIX 9 9 ASN A 300 ARG A 308 1 9 HELIX 10 10 THR A 309 ASN A 316 1 8 HELIX 11 11 SER A 319 GLU A 335 1 17 HELIX 12 12 PRO A 336 ASN A 339 5 4 HELIX 13 13 PRO A 345 ALA A 362 1 18 HELIX 14 14 THR A 363 ALA A 366 5 4 HELIX 15 15 ARG A 367 MET A 379 1 13 HELIX 16 16 GLU A 380 PHE A 382 5 3 HELIX 17 17 ASN A 386 ILE A 403 1 18 HELIX 18 18 SER A 404 ARG A 408 5 5 HELIX 19 19 PRO A 409 GLY A 435 1 27 HELIX 20 20 ALA A 439 ASP A 443 5 5 HELIX 21 21 THR A 448 VAL A 460 1 13 HELIX 22 22 VAL A 460 LYS A 470 1 11 HELIX 23 23 MET A 474 MET A 479 1 6 HELIX 24 24 MET A 479 LEU A 503 1 25 HELIX 25 25 SER B 189 LEU B 196 1 8 HELIX 26 26 ASP B 202 TRP B 206 5 5 HELIX 27 27 GLU B 207 LEU B 222 1 16 HELIX 28 28 GLY B 223 PHE B 228 1 6 HELIX 29 29 ASN B 231 ASN B 245 1 15 HELIX 30 30 ASN B 253 CYS B 271 1 19 HELIX 31 31 SER B 272 PHE B 277 1 6 HELIX 32 32 SER B 278 HIS B 292 1 15 HELIX 33 33 ASN B 300 ARG B 308 1 9 HELIX 34 34 THR B 309 ASN B 316 1 8 HELIX 35 35 SER B 319 GLU B 335 1 17 HELIX 36 36 PRO B 336 ASN B 339 5 4 HELIX 37 37 PRO B 345 ALA B 362 1 18 HELIX 38 38 THR B 363 ALA B 366 5 4 HELIX 39 39 ARG B 367 MET B 379 1 13 HELIX 40 40 GLU B 380 PHE B 382 5 3 HELIX 41 41 ASN B 386 ILE B 403 1 18 HELIX 42 42 SER B 404 ARG B 408 5 5 HELIX 43 43 PRO B 409 GLY B 435 1 27 HELIX 44 44 ALA B 439 ASP B 443 5 5 HELIX 45 45 THR B 448 VAL B 460 1 13 HELIX 46 46 VAL B 460 LYS B 470 1 11 HELIX 47 47 MET B 474 MET B 479 1 6 HELIX 48 48 MET B 479 LYS B 505 1 27 LINK NE2 HIS A 256 ZN ZN A 901 1555 1555 2.31 LINK NE2 HIS A 292 ZN ZN A 901 1555 1555 2.28 LINK OD2 ASP A 293 ZN ZN A 901 1555 1555 2.07 LINK OD1 ASP A 293 MG MG A 902 1555 1555 2.18 LINK OD1 ASP A 402 ZN ZN A 901 1555 1555 2.14 LINK ZN ZN A 901 O HOH A1029 1555 1555 2.44 LINK MG MG A 902 O HOH A1035 1555 1555 2.17 LINK MG MG A 902 O HOH A1047 1555 1555 2.30 LINK MG MG A 902 O HOH A1070 1555 1555 2.24 LINK MG MG A 902 O HOH A1100 1555 1555 2.46 LINK NE2 HIS B 256 ZN ZN B 901 1555 1555 2.32 LINK NE2 HIS B 292 ZN ZN B 901 1555 1555 2.29 LINK OD2 ASP B 293 ZN ZN B 901 1555 1555 2.06 LINK OD1 ASP B 293 MG MG B 902 1555 1555 2.17 LINK OD1 ASP B 402 ZN ZN B 901 1555 1555 2.14 LINK ZN ZN B 901 O HOH B1164 1555 1555 2.64 LINK MG MG B 902 O HOH B1064 1555 1555 2.25 LINK MG MG B 902 O HOH B1086 1555 1555 2.32 LINK MG MG B 902 O HOH B1102 1555 1555 2.24 LINK MG MG B 902 O HOH B1121 1555 1555 2.37 SITE 1 AC1 5 HIS A 256 HIS A 292 ASP A 293 ASP A 402 SITE 2 AC1 5 HOH A1029 SITE 1 AC2 5 ASP A 293 HOH A1035 HOH A1047 HOH A1070 SITE 2 AC2 5 HOH A1100 SITE 1 AC3 10 MET A 365 ILE A 403 LEU A 420 TYR A 424 SITE 2 AC3 10 GLN A 453 PHE A 456 VAL A 460 HOH A1022 SITE 3 AC3 10 HOH A1028 HOH A1094 SITE 1 AC4 5 HIS B 256 HIS B 292 ASP B 293 ASP B 402 SITE 2 AC4 5 HOH B1164 SITE 1 AC5 5 ASP B 293 HOH B1064 HOH B1086 HOH B1102 SITE 2 AC5 5 HOH B1121 SITE 1 AC6 10 ILE B 403 LEU B 420 TYR B 424 PHE B 441 SITE 2 AC6 10 ALA B 452 GLN B 453 PHE B 456 HOH B1008 SITE 3 AC6 10 HOH B1041 HOH B1050 CRYST1 103.688 103.688 270.075 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003703 0.00000