data_4G35 # _entry.id 4G35 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4G35 RCSB RCSB073678 WWPDB D_1000073678 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4G35 _pdbx_database_status.recvd_initial_deposition_date 2012-07-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Drake, E.' 1 'Edwardraja, S.' 2 'Lin, Q.' 3 'Gulick, A.M.' 4 # _citation.id primary _citation.title 'Rational design of proteolytically stable, cell-permeable peptide-based selective Mcl-1 inhibitors.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 14734 _citation.page_last 14737 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22920569 _citation.pdbx_database_id_DOI 10.1021/ja306864v # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Muppidi, A.' 1 primary 'Doi, K.' 2 primary 'Edwardraja, S.' 3 primary 'Drake, E.J.' 4 primary 'Gulick, A.M.' 5 primary 'Wang, H.G.' 6 primary 'Lin, Q.' 7 # _cell.entry_id 4G35 _cell.length_a 42.040 _cell.length_b 47.970 _cell.length_c 68.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G35 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Induced myeloid leukemia cell differentiation protein Mcl-1 homolog' 18634.074 1 ? ? 'residues 152-308' ? 2 polymer syn 'Noxa BH3 peptide (cysteine-mediated cross-linked)' 2184.657 1 ? ? ? ? 3 non-polymer syn "4,4'-bis(bromomethyl)biphenyl" 340.053 1 ? ? ? ? 4 water nat water 18.015 39 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bcl-2-related protein EAT/mcl1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSPEFEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGD VKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ DLEGG ; ;GPLGSPEFEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGD VKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ DLEGG ; A ? 2 'polypeptide(L)' no yes '(ACE)AA(DCY)LRRIGDCVNLRQKLLN(NH2)' XAACLRRIGDCVNLRQKLLNX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 PRO n 1 7 GLU n 1 8 PHE n 1 9 GLU n 1 10 ASP n 1 11 ASP n 1 12 LEU n 1 13 TYR n 1 14 ARG n 1 15 GLN n 1 16 SER n 1 17 LEU n 1 18 GLU n 1 19 ILE n 1 20 ILE n 1 21 SER n 1 22 ARG n 1 23 TYR n 1 24 LEU n 1 25 ARG n 1 26 GLU n 1 27 GLN n 1 28 ALA n 1 29 THR n 1 30 GLY n 1 31 SER n 1 32 LYS n 1 33 ASP n 1 34 SER n 1 35 LYS n 1 36 PRO n 1 37 LEU n 1 38 GLY n 1 39 GLU n 1 40 ALA n 1 41 GLY n 1 42 ALA n 1 43 ALA n 1 44 GLY n 1 45 ARG n 1 46 ARG n 1 47 ALA n 1 48 LEU n 1 49 GLU n 1 50 THR n 1 51 LEU n 1 52 ARG n 1 53 ARG n 1 54 VAL n 1 55 GLY n 1 56 ASP n 1 57 GLY n 1 58 VAL n 1 59 GLN n 1 60 ARG n 1 61 ASN n 1 62 HIS n 1 63 GLU n 1 64 THR n 1 65 ALA n 1 66 PHE n 1 67 GLN n 1 68 GLY n 1 69 MET n 1 70 LEU n 1 71 ARG n 1 72 LYS n 1 73 LEU n 1 74 ASP n 1 75 ILE n 1 76 LYS n 1 77 ASN n 1 78 GLU n 1 79 GLY n 1 80 ASP n 1 81 VAL n 1 82 LYS n 1 83 SER n 1 84 PHE n 1 85 SER n 1 86 ARG n 1 87 VAL n 1 88 MET n 1 89 VAL n 1 90 HIS n 1 91 VAL n 1 92 PHE n 1 93 LYS n 1 94 ASP n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 ASN n 1 99 TRP n 1 100 GLY n 1 101 ARG n 1 102 ILE n 1 103 VAL n 1 104 THR n 1 105 LEU n 1 106 ILE n 1 107 SER n 1 108 PHE n 1 109 GLY n 1 110 ALA n 1 111 PHE n 1 112 VAL n 1 113 ALA n 1 114 LYS n 1 115 HIS n 1 116 LEU n 1 117 LYS n 1 118 SER n 1 119 VAL n 1 120 ASN n 1 121 GLN n 1 122 GLU n 1 123 SER n 1 124 PHE n 1 125 ILE n 1 126 GLU n 1 127 PRO n 1 128 LEU n 1 129 ALA n 1 130 GLU n 1 131 THR n 1 132 ILE n 1 133 THR n 1 134 ASP n 1 135 VAL n 1 136 LEU n 1 137 VAL n 1 138 ARG n 1 139 THR n 1 140 LYS n 1 141 ARG n 1 142 ASP n 1 143 TRP n 1 144 LEU n 1 145 VAL n 1 146 LYS n 1 147 GLN n 1 148 ARG n 1 149 GLY n 1 150 TRP n 1 151 ASP n 1 152 GLY n 1 153 PHE n 1 154 VAL n 1 155 GLU n 1 156 PHE n 1 157 PHE n 1 158 HIS n 1 159 VAL n 1 160 GLN n 1 161 ASP n 1 162 LEU n 1 163 GLU n 1 164 GLY n 1 165 GLY n 2 1 ACE n 2 2 ALA n 2 3 ALA n 2 4 DCY n 2 5 LEU n 2 6 ARG n 2 7 ARG n 2 8 ILE n 2 9 GLY n 2 10 ASP n 2 11 CYS n 2 12 VAL n 2 13 ASN n 2 14 LEU n 2 15 ARG n 2 16 GLN n 2 17 LYS n 2 18 LEU n 2 19 LEU n 2 20 ASN n 2 21 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mcl1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic Construct' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MCL1_MOUSE P97287 1 ;EDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVM VHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQDLEGG ; 152 ? 2 PDB 4G35 4G35 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4G35 A 9 ? 165 ? P97287 152 ? 308 ? 171 327 2 2 4G35 B 1 ? 21 ? 4G35 1 ? 21 ? 1 21 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4G35 GLY A 1 ? UNP P97287 ? ? 'EXPRESSION TAG' 163 1 1 4G35 PRO A 2 ? UNP P97287 ? ? 'EXPRESSION TAG' 164 2 1 4G35 LEU A 3 ? UNP P97287 ? ? 'EXPRESSION TAG' 165 3 1 4G35 GLY A 4 ? UNP P97287 ? ? 'EXPRESSION TAG' 166 4 1 4G35 SER A 5 ? UNP P97287 ? ? 'EXPRESSION TAG' 167 5 1 4G35 PRO A 6 ? UNP P97287 ? ? 'EXPRESSION TAG' 168 6 1 4G35 GLU A 7 ? UNP P97287 ? ? 'EXPRESSION TAG' 169 7 1 4G35 PHE A 8 ? UNP P97287 ? ? 'EXPRESSION TAG' 170 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4BP non-polymer . "4,4'-bis(bromomethyl)biphenyl" ? 'C14 H12 Br2' 340.053 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G35 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_percent_sol 28.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '15% Peg 8000, 225 mM CaCl2, 2% Ethylene Glycol,50 mM Epps (pH 8.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2011-04-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 # _reflns.entry_id 4G35 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 39.31 _reflns.d_resolution_high 2.0 _reflns.number_obs 9801 _reflns.number_all 9850 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.287 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.1 _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4G35 _refine.ls_number_reflns_obs 9295 _refine.ls_number_reflns_all 9357 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.31 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.34 _refine.ls_R_factor_obs 0.19389 _refine.ls_R_factor_all 0.1972 _refine.ls_R_factor_R_work 0.19171 _refine.ls_R_factor_R_free 0.23879 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 468 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 27.120 _refine.aniso_B[1][1] -0.18 _refine.aniso_B[2][2] -1.36 _refine.aniso_B[3][3] 1.54 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.212 _refine.pdbx_overall_ESU_R_Free 0.179 _refine.overall_SU_ML 0.119 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.194 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1202 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1255 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 39.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.021 0.021 ? 1237 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.789 1.959 ? 1663 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.001 5.000 ? 142 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.486 22.063 ? 63 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.303 15.000 ? 217 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 19.134 15.000 ? 16 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.136 0.200 ? 183 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.010 0.020 ? 933 ? 'X-RAY DIFFRACTION' r_mcbond_it 1.218 1.500 ? 731 ? 'X-RAY DIFFRACTION' r_mcangle_it 2.362 2.000 ? 1169 ? 'X-RAY DIFFRACTION' r_scbond_it 3.791 3.000 ? 506 ? 'X-RAY DIFFRACTION' r_scangle_it 6.258 4.500 ? 494 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 652 _refine_ls_shell.R_factor_R_work 0.202 _refine_ls_shell.percent_reflns_obs 99.00 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4G35 _struct.title 'Mcl-1 in complex with a biphenyl cross-linked Noxa peptide.' _struct.pdbx_descriptor 'Induced myeloid leukemia cell differentiation protein Mcl-1 homolog, Noxa BH3 (cysteine-mediated cross-linked)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G35 _struct_keywords.pdbx_keywords Apoptosis/Inhibitor _struct_keywords.text 'APOPTOSIS, BH3 domain, Bcl-2 family, Apoptosis-Inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? THR A 29 ? ASP A 172 THR A 191 1 ? 20 HELX_P HELX_P2 2 ARG A 45 ? HIS A 62 ? ARG A 207 HIS A 224 1 ? 18 HELX_P HELX_P3 3 HIS A 62 ? ARG A 71 ? HIS A 224 ARG A 233 1 ? 10 HELX_P HELX_P4 4 SER A 83 ? PHE A 92 ? SER A 245 PHE A 254 1 ? 10 HELX_P HELX_P5 5 ASN A 98 ? VAL A 119 ? ASN A 260 VAL A 281 1 ? 22 HELX_P HELX_P6 6 GLN A 121 ? SER A 123 ? GLN A 283 SER A 285 5 ? 3 HELX_P HELX_P7 7 PHE A 124 ? GLN A 147 ? PHE A 286 GLN A 309 1 ? 24 HELX_P HELX_P8 8 ARG A 148 ? HIS A 158 ? ARG A 310 HIS A 320 1 ? 11 HELX_P HELX_P9 9 ALA B 2 ? ASN B 20 ? ALA B 2 ASN B 20 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B ACE 1 C ? ? ? 1_555 B ALA 2 N ? ? B ACE 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? B ALA 3 C ? ? ? 1_555 B DCY 4 N ? ? B ALA 3 B DCY 4 1_555 ? ? ? ? ? ? ? 1.318 ? covale3 covale ? ? B DCY 4 C ? ? ? 1_555 B LEU 5 N ? ? B DCY 4 B LEU 5 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? B ASN 20 C ? ? ? 1_555 B NH2 21 N ? ? B ASN 20 B NH2 21 1_555 ? ? ? ? ? ? ? 1.235 ? covale5 covale ? ? B DCY 4 SG ? ? ? 1_555 C 4BP . C01 ? ? B DCY 4 B 4BP 101 1_555 ? ? ? ? ? ? ? 1.816 ? covale6 covale ? ? B CYS 11 SG ? ? ? 1_555 C 4BP . C12 ? ? B CYS 11 B 4BP 101 1_555 ? ? ? ? ? ? ? 1.848 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 24 _struct_site.details 'BINDING SITE FOR LINKED RESIDUES B 1 to 22' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 GLU A 9 ? GLU A 171 . ? 4_445 ? 2 AC1 24 GLU A 26 ? GLU A 188 . ? 4_455 ? 3 AC1 24 THR A 29 ? THR A 191 . ? 4_455 ? 4 AC1 24 ARG A 53 ? ARG A 215 . ? 4_455 ? 5 AC1 24 ASP A 56 ? ASP A 218 . ? 4_455 ? 6 AC1 24 GLY A 57 ? GLY A 219 . ? 4_455 ? 7 AC1 24 HIS A 62 ? HIS A 224 . ? 1_555 ? 8 AC1 24 MET A 69 ? MET A 231 . ? 1_555 ? 9 AC1 24 VAL A 87 ? VAL A 249 . ? 1_555 ? 10 AC1 24 HIS A 90 ? HIS A 252 . ? 1_555 ? 11 AC1 24 VAL A 91 ? VAL A 253 . ? 1_555 ? 12 AC1 24 ASP A 94 ? ASP A 256 . ? 1_555 ? 13 AC1 24 ASN A 98 ? ASN A 260 . ? 1_555 ? 14 AC1 24 TRP A 99 ? TRP A 261 . ? 1_555 ? 15 AC1 24 GLY A 100 ? GLY A 262 . ? 1_555 ? 16 AC1 24 ARG A 101 ? ARG A 263 . ? 1_555 ? 17 AC1 24 THR A 104 ? THR A 266 . ? 1_555 ? 18 AC1 24 LEU A 105 ? LEU A 267 . ? 1_555 ? 19 AC1 24 PHE A 156 ? PHE A 318 . ? 1_555 ? 20 AC1 24 PHE A 157 ? PHE A 319 . ? 1_555 ? 21 AC1 24 VAL A 159 ? VAL A 321 . ? 1_555 ? 22 AC1 24 GLN A 160 ? GLN A 322 . ? 4_455 ? 23 AC1 24 HOH D . ? HOH A 403 . ? 4_455 ? 24 AC1 24 HOH E . ? HOH B 201 . ? 1_555 ? # _database_PDB_matrix.entry_id 4G35 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4G35 _atom_sites.fract_transf_matrix[1][1] 0.023787 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020846 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014577 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 163 ? ? ? A . n A 1 2 PRO 2 164 ? ? ? A . n A 1 3 LEU 3 165 ? ? ? A . n A 1 4 GLY 4 166 ? ? ? A . n A 1 5 SER 5 167 ? ? ? A . n A 1 6 PRO 6 168 ? ? ? A . n A 1 7 GLU 7 169 ? ? ? A . n A 1 8 PHE 8 170 ? ? ? A . n A 1 9 GLU 9 171 171 GLU GLU A . n A 1 10 ASP 10 172 172 ASP ASP A . n A 1 11 ASP 11 173 173 ASP ASP A . n A 1 12 LEU 12 174 174 LEU LEU A . n A 1 13 TYR 13 175 175 TYR TYR A . n A 1 14 ARG 14 176 176 ARG ARG A . n A 1 15 GLN 15 177 177 GLN GLN A . n A 1 16 SER 16 178 178 SER SER A . n A 1 17 LEU 17 179 179 LEU LEU A . n A 1 18 GLU 18 180 180 GLU GLU A . n A 1 19 ILE 19 181 181 ILE ILE A . n A 1 20 ILE 20 182 182 ILE ILE A . n A 1 21 SER 21 183 183 SER SER A . n A 1 22 ARG 22 184 184 ARG ARG A . n A 1 23 TYR 23 185 185 TYR TYR A . n A 1 24 LEU 24 186 186 LEU LEU A . n A 1 25 ARG 25 187 187 ARG ARG A . n A 1 26 GLU 26 188 188 GLU GLU A . n A 1 27 GLN 27 189 189 GLN GLN A . n A 1 28 ALA 28 190 190 ALA ALA A . n A 1 29 THR 29 191 191 THR THR A . n A 1 30 GLY 30 192 ? ? ? A . n A 1 31 SER 31 193 ? ? ? A . n A 1 32 LYS 32 194 ? ? ? A . n A 1 33 ASP 33 195 ? ? ? A . n A 1 34 SER 34 196 ? ? ? A . n A 1 35 LYS 35 197 ? ? ? A . n A 1 36 PRO 36 198 ? ? ? A . n A 1 37 LEU 37 199 ? ? ? A . n A 1 38 GLY 38 200 ? ? ? A . n A 1 39 GLU 39 201 ? ? ? A . n A 1 40 ALA 40 202 ? ? ? A . n A 1 41 GLY 41 203 ? ? ? A . n A 1 42 ALA 42 204 ? ? ? A . n A 1 43 ALA 43 205 ? ? ? A . n A 1 44 GLY 44 206 206 GLY GLY A . n A 1 45 ARG 45 207 207 ARG ARG A . n A 1 46 ARG 46 208 208 ARG ARG A . n A 1 47 ALA 47 209 209 ALA ALA A . n A 1 48 LEU 48 210 210 LEU LEU A . n A 1 49 GLU 49 211 211 GLU GLU A . n A 1 50 THR 50 212 212 THR THR A . n A 1 51 LEU 51 213 213 LEU LEU A . n A 1 52 ARG 52 214 214 ARG ARG A . n A 1 53 ARG 53 215 215 ARG ARG A . n A 1 54 VAL 54 216 216 VAL VAL A . n A 1 55 GLY 55 217 217 GLY GLY A . n A 1 56 ASP 56 218 218 ASP ASP A . n A 1 57 GLY 57 219 219 GLY GLY A . n A 1 58 VAL 58 220 220 VAL VAL A . n A 1 59 GLN 59 221 221 GLN GLN A . n A 1 60 ARG 60 222 222 ARG ARG A . n A 1 61 ASN 61 223 223 ASN ASN A . n A 1 62 HIS 62 224 224 HIS HIS A . n A 1 63 GLU 63 225 225 GLU GLU A . n A 1 64 THR 64 226 226 THR THR A . n A 1 65 ALA 65 227 227 ALA ALA A . n A 1 66 PHE 66 228 228 PHE PHE A . n A 1 67 GLN 67 229 229 GLN GLN A . n A 1 68 GLY 68 230 230 GLY GLY A . n A 1 69 MET 69 231 231 MET MET A . n A 1 70 LEU 70 232 232 LEU LEU A . n A 1 71 ARG 71 233 233 ARG ARG A . n A 1 72 LYS 72 234 234 LYS LYS A . n A 1 73 LEU 73 235 ? ? ? A . n A 1 74 ASP 74 236 ? ? ? A . n A 1 75 ILE 75 237 ? ? ? A . n A 1 76 LYS 76 238 ? ? ? A . n A 1 77 ASN 77 239 ? ? ? A . n A 1 78 GLU 78 240 ? ? ? A . n A 1 79 GLY 79 241 ? ? ? A . n A 1 80 ASP 80 242 ? ? ? A . n A 1 81 VAL 81 243 ? ? ? A . n A 1 82 LYS 82 244 244 LYS LYS A . n A 1 83 SER 83 245 245 SER SER A . n A 1 84 PHE 84 246 246 PHE PHE A . n A 1 85 SER 85 247 247 SER SER A . n A 1 86 ARG 86 248 248 ARG ARG A . n A 1 87 VAL 87 249 249 VAL VAL A . n A 1 88 MET 88 250 250 MET MET A . n A 1 89 VAL 89 251 251 VAL VAL A . n A 1 90 HIS 90 252 252 HIS HIS A . n A 1 91 VAL 91 253 253 VAL VAL A . n A 1 92 PHE 92 254 254 PHE PHE A . n A 1 93 LYS 93 255 255 LYS LYS A . n A 1 94 ASP 94 256 256 ASP ASP A . n A 1 95 GLY 95 257 257 GLY GLY A . n A 1 96 VAL 96 258 258 VAL VAL A . n A 1 97 THR 97 259 259 THR THR A . n A 1 98 ASN 98 260 260 ASN ASN A . n A 1 99 TRP 99 261 261 TRP TRP A . n A 1 100 GLY 100 262 262 GLY GLY A . n A 1 101 ARG 101 263 263 ARG ARG A . n A 1 102 ILE 102 264 264 ILE ILE A . n A 1 103 VAL 103 265 265 VAL VAL A . n A 1 104 THR 104 266 266 THR THR A . n A 1 105 LEU 105 267 267 LEU LEU A . n A 1 106 ILE 106 268 268 ILE ILE A . n A 1 107 SER 107 269 269 SER SER A . n A 1 108 PHE 108 270 270 PHE PHE A . n A 1 109 GLY 109 271 271 GLY GLY A . n A 1 110 ALA 110 272 272 ALA ALA A . n A 1 111 PHE 111 273 273 PHE PHE A . n A 1 112 VAL 112 274 274 VAL VAL A . n A 1 113 ALA 113 275 275 ALA ALA A . n A 1 114 LYS 114 276 276 LYS LYS A . n A 1 115 HIS 115 277 277 HIS HIS A . n A 1 116 LEU 116 278 278 LEU LEU A . n A 1 117 LYS 117 279 279 LYS LYS A . n A 1 118 SER 118 280 280 SER SER A . n A 1 119 VAL 119 281 281 VAL VAL A . n A 1 120 ASN 120 282 282 ASN ASN A . n A 1 121 GLN 121 283 283 GLN GLN A . n A 1 122 GLU 122 284 284 GLU GLU A . n A 1 123 SER 123 285 285 SER SER A . n A 1 124 PHE 124 286 286 PHE PHE A . n A 1 125 ILE 125 287 287 ILE ILE A . n A 1 126 GLU 126 288 288 GLU GLU A . n A 1 127 PRO 127 289 289 PRO PRO A . n A 1 128 LEU 128 290 290 LEU LEU A . n A 1 129 ALA 129 291 291 ALA ALA A . n A 1 130 GLU 130 292 292 GLU GLU A . n A 1 131 THR 131 293 293 THR THR A . n A 1 132 ILE 132 294 294 ILE ILE A . n A 1 133 THR 133 295 295 THR THR A . n A 1 134 ASP 134 296 296 ASP ASP A . n A 1 135 VAL 135 297 297 VAL VAL A . n A 1 136 LEU 136 298 298 LEU LEU A . n A 1 137 VAL 137 299 299 VAL VAL A . n A 1 138 ARG 138 300 300 ARG ARG A . n A 1 139 THR 139 301 301 THR THR A . n A 1 140 LYS 140 302 302 LYS LYS A . n A 1 141 ARG 141 303 303 ARG ARG A . n A 1 142 ASP 142 304 304 ASP ASP A . n A 1 143 TRP 143 305 305 TRP TRP A . n A 1 144 LEU 144 306 306 LEU LEU A . n A 1 145 VAL 145 307 307 VAL VAL A . n A 1 146 LYS 146 308 308 LYS LYS A . n A 1 147 GLN 147 309 309 GLN GLN A . n A 1 148 ARG 148 310 310 ARG ARG A . n A 1 149 GLY 149 311 311 GLY GLY A . n A 1 150 TRP 150 312 312 TRP TRP A . n A 1 151 ASP 151 313 313 ASP ASP A . n A 1 152 GLY 152 314 314 GLY GLY A . n A 1 153 PHE 153 315 315 PHE PHE A . n A 1 154 VAL 154 316 316 VAL VAL A . n A 1 155 GLU 155 317 317 GLU GLU A . n A 1 156 PHE 156 318 318 PHE PHE A . n A 1 157 PHE 157 319 319 PHE PHE A . n A 1 158 HIS 158 320 320 HIS HIS A . n A 1 159 VAL 159 321 321 VAL VAL A . n A 1 160 GLN 160 322 322 GLN GLN A . n A 1 161 ASP 161 323 ? ? ? A . n A 1 162 LEU 162 324 ? ? ? A . n A 1 163 GLU 163 325 ? ? ? A . n A 1 164 GLY 164 326 ? ? ? A . n A 1 165 GLY 165 327 ? ? ? A . n B 2 1 ACE 1 1 1 ACE ACE B . n B 2 2 ALA 2 2 2 ALA ALA B . n B 2 3 ALA 3 3 3 ALA ALA B . n B 2 4 DCY 4 4 4 DCY BPH B . n B 2 5 LEU 5 5 5 LEU LEU B . n B 2 6 ARG 6 6 6 ARG ARG B . n B 2 7 ARG 7 7 7 ARG ARG B . n B 2 8 ILE 8 8 8 ILE ILE B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 ASP 10 10 10 ASP ASP B . n B 2 11 CYS 11 11 11 CYS CYS B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 ASN 13 13 13 ASN ASN B . n B 2 14 LEU 14 14 14 LEU LEU B . n B 2 15 ARG 15 15 15 ARG ARG B . n B 2 16 GLN 16 16 16 GLN GLN B . n B 2 17 LYS 17 17 17 LYS LYS B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 LEU 19 19 19 LEU LEU B . n B 2 20 ASN 20 20 20 ASN ASN B . n B 2 21 NH2 21 21 20 NH2 ASN B . n # _pdbx_molecule_features.prd_id PRD_000921 _pdbx_molecule_features.name 'Noxa BH3 peptide (cysteine-mediated cross-linked)' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Anticancer _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000921 B 1 PRD_000921 C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1960 ? 1 MORE -14 ? 1 'SSA (A^2)' 8170 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-05 2 'Structure model' 1 1 2013-06-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Derived calculations' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0088 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 172 ? ? NH1 A ARG 303 ? ? 1.95 2 1 OE1 A GLU 171 ? ? O A HOH 421 ? ? 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 246 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -36.15 _pdbx_validate_torsion.psi -38.01 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 245 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PHE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 246 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 143.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 244 ? CG ? A LYS 82 CG 2 1 Y 1 A LYS 244 ? CD ? A LYS 82 CD 3 1 Y 1 A LYS 244 ? CE ? A LYS 82 CE 4 1 Y 1 A LYS 244 ? NZ ? A LYS 82 NZ 5 1 Y 1 A LYS 255 ? CG ? A LYS 93 CG 6 1 Y 1 A LYS 255 ? CD ? A LYS 93 CD 7 1 Y 1 A LYS 255 ? CE ? A LYS 93 CE 8 1 Y 1 A LYS 255 ? NZ ? A LYS 93 NZ 9 1 Y 1 A ASN 282 ? CG ? A ASN 120 CG 10 1 Y 1 A ASN 282 ? OD1 ? A ASN 120 OD1 11 1 Y 1 A ASN 282 ? ND2 ? A ASN 120 ND2 12 1 Y 1 A ARG 300 ? CG ? A ARG 138 CG 13 1 Y 1 A ARG 300 ? CD ? A ARG 138 CD 14 1 Y 1 A ARG 300 ? NE ? A ARG 138 NE 15 1 Y 1 A ARG 300 ? CZ ? A ARG 138 CZ 16 1 Y 1 A ARG 300 ? NH1 ? A ARG 138 NH1 17 1 Y 1 A ARG 300 ? NH2 ? A ARG 138 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 163 ? A GLY 1 2 1 Y 1 A PRO 164 ? A PRO 2 3 1 Y 1 A LEU 165 ? A LEU 3 4 1 Y 1 A GLY 166 ? A GLY 4 5 1 Y 1 A SER 167 ? A SER 5 6 1 Y 1 A PRO 168 ? A PRO 6 7 1 Y 1 A GLU 169 ? A GLU 7 8 1 Y 1 A PHE 170 ? A PHE 8 9 1 Y 1 A GLY 192 ? A GLY 30 10 1 Y 1 A SER 193 ? A SER 31 11 1 Y 1 A LYS 194 ? A LYS 32 12 1 Y 1 A ASP 195 ? A ASP 33 13 1 Y 1 A SER 196 ? A SER 34 14 1 Y 1 A LYS 197 ? A LYS 35 15 1 Y 1 A PRO 198 ? A PRO 36 16 1 Y 1 A LEU 199 ? A LEU 37 17 1 Y 1 A GLY 200 ? A GLY 38 18 1 Y 1 A GLU 201 ? A GLU 39 19 1 Y 1 A ALA 202 ? A ALA 40 20 1 Y 1 A GLY 203 ? A GLY 41 21 1 Y 1 A ALA 204 ? A ALA 42 22 1 Y 1 A ALA 205 ? A ALA 43 23 1 Y 1 A LEU 235 ? A LEU 73 24 1 Y 1 A ASP 236 ? A ASP 74 25 1 Y 1 A ILE 237 ? A ILE 75 26 1 Y 1 A LYS 238 ? A LYS 76 27 1 Y 1 A ASN 239 ? A ASN 77 28 1 Y 1 A GLU 240 ? A GLU 78 29 1 Y 1 A GLY 241 ? A GLY 79 30 1 Y 1 A ASP 242 ? A ASP 80 31 1 Y 1 A VAL 243 ? A VAL 81 32 1 Y 1 A ASP 323 ? A ASP 161 33 1 Y 1 A LEU 324 ? A LEU 162 34 1 Y 1 A GLU 325 ? A GLU 163 35 1 Y 1 A GLY 326 ? A GLY 164 36 1 Y 1 A GLY 327 ? A GLY 165 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "4,4'-bis(bromomethyl)biphenyl" 4BP 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4BP 1 101 4 4BP BPH B . D 4 HOH 1 401 4 HOH HOH A . D 4 HOH 2 402 5 HOH HOH A . D 4 HOH 3 403 26 HOH HOH A . D 4 HOH 4 404 30 HOH HOH A . D 4 HOH 5 405 37 HOH HOH A . D 4 HOH 6 406 40 HOH HOH A . D 4 HOH 7 407 44 HOH HOH A . D 4 HOH 8 408 47 HOH HOH A . D 4 HOH 9 409 49 HOH HOH A . D 4 HOH 10 410 53 HOH HOH A . D 4 HOH 11 411 54 HOH HOH A . D 4 HOH 12 412 55 HOH HOH A . D 4 HOH 13 413 59 HOH HOH A . D 4 HOH 14 414 60 HOH HOH A . D 4 HOH 15 415 61 HOH HOH A . D 4 HOH 16 416 62 HOH HOH A . D 4 HOH 17 417 64 HOH HOH A . D 4 HOH 18 418 66 HOH HOH A . D 4 HOH 19 419 68 HOH HOH A . D 4 HOH 20 420 70 HOH HOH A . D 4 HOH 21 421 71 HOH HOH A . D 4 HOH 22 422 73 HOH HOH A . D 4 HOH 23 423 74 HOH HOH A . D 4 HOH 24 424 75 HOH HOH A . D 4 HOH 25 425 76 HOH HOH A . D 4 HOH 26 426 77 HOH HOH A . D 4 HOH 27 427 78 HOH HOH A . D 4 HOH 28 428 79 HOH HOH A . D 4 HOH 29 429 80 HOH HOH A . D 4 HOH 30 430 81 HOH HOH A . D 4 HOH 31 431 82 HOH HOH A . D 4 HOH 32 432 83 HOH HOH A . D 4 HOH 33 433 84 HOH HOH A . D 4 HOH 34 434 86 HOH HOH A . D 4 HOH 35 435 87 HOH HOH A . E 4 HOH 1 201 69 HOH HOH B . E 4 HOH 2 202 72 HOH HOH B . E 4 HOH 3 203 88 HOH HOH B . E 4 HOH 4 204 90 HOH HOH B . #