HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-JUL-12 4G3E TITLE CRYSTAL STRUCTURE OF MURINE NF-KAPPAB INDUCING KINASE (NIK) BOUND TO A TITLE 2 6-ALKYNYLINDOLINE (CMP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NF-KAPPA-BETA-INDUCING KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE/THREONINE-PROTEIN KINASE NIK; COMPND 5 EC: 2.7.11.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MAP3K14, NF-KAPPAB INDUCING KINASE, NIK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS TRANSFER VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACGP67 KEYWDS NON-RD KINASE, PROTEIN SERINE/THREONINE KINASE, NF-KAPPAB, STRUCTURE- KEYWDS 2 BASED DRUG DESIGN, MAP3K14, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.HYMOWITZ,G.DE LEON-BOENIG REVDAT 5 03-APR-24 4G3E 1 REMARK REVDAT 4 28-FEB-24 4G3E 1 REMARK SEQADV REVDAT 3 24-JAN-18 4G3E 1 AUTHOR REMARK REVDAT 2 23-JAN-13 4G3E 1 JRNL REVDAT 1 15-AUG-12 4G3E 0 JRNL AUTH G.DE LEON-BOENIG,K.K.BOWMAN,J.A.FENG,T.CRAWFORD,C.EVERETT, JRNL AUTH 2 Y.FRANKE,A.OH,M.STANLEY,S.T.STABEN,M.A.STAROVASNIK, JRNL AUTH 3 H.J.WALLWEBER,J.WU,L.C.WU,A.R.JOHNSON,S.G.HYMOWITZ JRNL TITL THE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE JRNL TITL 2 NF-KAPPAB INDUCING KINASE REVEALS A NARROW BUT FLEXIBLE JRNL TITL 3 ACTIVE SITE. JRNL REF STRUCTURE V. 20 1704 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22921830 JRNL DOI 10.1016/J.STR.2012.07.013 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.381 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5150 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6969 ; 1.224 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ; 5.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;38.370 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 892 ;16.331 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3858 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 472 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3999 40.0639 -3.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: 0.0915 REMARK 3 T33: 0.2102 T12: 0.0679 REMARK 3 T13: 0.0136 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.0346 L22: 5.4137 REMARK 3 L33: 1.6367 L12: -0.7101 REMARK 3 L13: -1.6015 L23: 0.1059 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: 0.0915 S13: 0.2536 REMARK 3 S21: -0.0639 S22: -0.0858 S23: -0.2112 REMARK 3 S31: 0.0415 S32: -0.0361 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 473 A 671 REMARK 3 ORIGIN FOR THE GROUP (A): 53.0599 12.4309 -4.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.0426 REMARK 3 T33: 0.0170 T12: 0.0560 REMARK 3 T13: 0.0378 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.7396 L22: 4.3899 REMARK 3 L33: 3.9335 L12: 0.4319 REMARK 3 L13: -0.1751 L23: -0.3596 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.1618 S13: -0.1261 REMARK 3 S21: -0.2607 S22: 0.0187 S23: -0.2023 REMARK 3 S31: 0.1244 S32: 0.2347 S33: 0.0731 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 334 B 472 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3036 67.0408 2.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0927 REMARK 3 T33: 0.1800 T12: 0.0202 REMARK 3 T13: -0.0229 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.5853 L22: 5.4904 REMARK 3 L33: 2.3037 L12: 1.3026 REMARK 3 L13: -1.1479 L23: 0.6700 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 0.0162 S13: 0.0281 REMARK 3 S21: 0.0406 S22: -0.0803 S23: -0.2389 REMARK 3 S31: -0.0432 S32: 0.0091 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 473 B 674 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3244 42.9371 1.0622 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.1124 REMARK 3 T33: 0.0546 T12: -0.0391 REMARK 3 T13: -0.0290 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 3.4109 L22: 4.1307 REMARK 3 L33: 4.7559 L12: 0.1693 REMARK 3 L13: 0.5093 L23: 0.4486 REMARK 3 S TENSOR REMARK 3 S11: 0.2121 S12: 0.0146 S13: -0.1720 REMARK 3 S21: 0.0469 S22: -0.0633 S23: -0.0196 REMARK 3 S31: 0.4816 S32: 0.0103 S33: -0.1488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4G3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO MURINE NIK KINASE DOMAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2UL PROTEIN WITH 2UL WELL SOLUTION OF REMARK 280 0.5 M AMMONIUM SULFATE, 0.9 M LITHIUM SULFATE,0.1M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE THEN SOAKED IN WELL SOLUTION WITH 1 REMARK 280 MM CMP1, PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.57550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.86325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.28775 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 327 REMARK 465 SER A 328 REMARK 465 ALA A 329 REMARK 465 LEU A 330 REMARK 465 GLU A 331 REMARK 465 LYS A 332 REMARK 465 VAL A 333 REMARK 465 SER A 364 REMARK 465 GLY A 365 REMARK 465 SER A 366 REMARK 465 ALA A 367 REMARK 465 LYS A 368 REMARK 465 LEU A 369 REMARK 465 GLN A 370 REMARK 465 ARG A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 PRO A 374 REMARK 465 GLU A 375 REMARK 465 THR A 376 REMARK 465 GLU A 377 REMARK 465 PRO A 545 REMARK 465 ASP A 546 REMARK 465 GLY A 547 REMARK 465 LEU A 548 REMARK 465 GLY A 549 REMARK 465 LYS A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 LEU A 553 REMARK 465 THR A 554 REMARK 465 GLY A 555 REMARK 465 ASP A 556 REMARK 465 TYR A 557 REMARK 465 ARG A 603 REMARK 465 GLY A 676 REMARK 465 ASN A 677 REMARK 465 SER A 678 REMARK 465 GLY B 327 REMARK 465 SER B 328 REMARK 465 ALA B 329 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 LYS B 332 REMARK 465 VAL B 333 REMARK 465 SER B 364 REMARK 465 GLY B 365 REMARK 465 SER B 366 REMARK 465 ALA B 367 REMARK 465 LYS B 368 REMARK 465 LEU B 369 REMARK 465 GLN B 370 REMARK 465 ARG B 371 REMARK 465 LEU B 372 REMARK 465 GLY B 373 REMARK 465 PRO B 374 REMARK 465 GLU B 375 REMARK 465 THR B 376 REMARK 465 GLU B 377 REMARK 465 TYR B 601 REMARK 465 PHE B 602 REMARK 465 ARG B 603 REMARK 465 GLY B 676 REMARK 465 ASN B 677 REMARK 465 SER B 678 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 362 31.68 -82.69 REMARK 500 VAL A 399 -50.10 -125.00 REMARK 500 GLN A 405 -76.73 -45.85 REMARK 500 ARG A 407 95.31 -64.99 REMARK 500 CYS A 428 -155.23 -144.04 REMARK 500 CYS A 446 -49.34 178.15 REMARK 500 ASP A 517 50.26 -150.78 REMARK 500 ASP A 536 82.98 63.15 REMARK 500 ASP A 576 -168.44 -129.94 REMARK 500 TRP A 598 -19.75 73.53 REMARK 500 PRO A 616 35.58 -73.86 REMARK 500 LYS A 668 76.68 -119.85 REMARK 500 GLN B 405 -132.19 25.31 REMARK 500 CYS B 428 -157.25 -143.92 REMARK 500 ASP B 517 52.08 -150.72 REMARK 500 ASP B 536 90.15 70.18 REMARK 500 PRO B 545 27.95 -70.29 REMARK 500 ASP B 546 -10.96 -146.77 REMARK 500 ASP B 576 -166.40 -128.99 REMARK 500 PRO B 616 37.85 -70.55 REMARK 500 LYS B 668 -119.47 -122.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 405 PRO B 406 149.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WC A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WC B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G3C RELATED DB: PDB REMARK 900 RELATED ID: 4G3D RELATED DB: PDB REMARK 900 RELATED ID: 4G3F RELATED DB: PDB REMARK 900 RELATED ID: 4G3G RELATED DB: PDB DBREF 4G3E A 329 675 UNP Q9WUL6 M3K14_MOUSE 329 675 DBREF 4G3E B 329 675 UNP Q9WUL6 M3K14_MOUSE 329 675 SEQADV 4G3E GLY A 327 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E SER A 328 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E GLY A 676 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E ASN A 677 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E SER A 678 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E GLY B 327 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E SER B 328 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E GLY B 676 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E ASN B 677 UNP Q9WUL6 EXPRESSION TAG SEQADV 4G3E SER B 678 UNP Q9WUL6 EXPRESSION TAG SEQRES 1 A 352 GLY SER ALA LEU GLU LYS VAL PRO VAL GLU GLU TYR LEU SEQRES 2 A 352 VAL HIS ALA LEU GLN GLY SER VAL SER SER GLY GLN ALA SEQRES 3 A 352 HIS SER LEU ALA SER LEU ALA LYS THR TRP SER SER GLY SEQRES 4 A 352 SER ALA LYS LEU GLN ARG LEU GLY PRO GLU THR GLU ASP SEQRES 5 A 352 ASN GLU GLY VAL LEU LEU THR GLU LYS LEU LYS PRO VAL SEQRES 6 A 352 ASP TYR GLU TYR ARG GLU GLU VAL HIS TRP MET THR HIS SEQRES 7 A 352 GLN PRO ARG VAL GLY ARG GLY SER PHE GLY GLU VAL HIS SEQRES 8 A 352 ARG MET LYS ASP LYS GLN THR GLY PHE GLN CYS ALA VAL SEQRES 9 A 352 LYS LYS VAL ARG LEU GLU VAL PHE ARG VAL GLU GLU LEU SEQRES 10 A 352 VAL ALA CYS ALA GLY LEU SER SER PRO ARG ILE VAL PRO SEQRES 11 A 352 LEU TYR GLY ALA VAL ARG GLU GLY PRO TRP VAL ASN ILE SEQRES 12 A 352 PHE MET GLU LEU LEU GLU GLY GLY SER LEU GLY GLN LEU SEQRES 13 A 352 ILE LYS GLN MET GLY CYS LEU PRO GLU ASP ARG ALA LEU SEQRES 14 A 352 TYR TYR LEU GLY GLN ALA LEU GLU GLY LEU GLU TYR LEU SEQRES 15 A 352 HIS THR ARG ARG ILE LEU HIS GLY ASP VAL LYS ALA ASP SEQRES 16 A 352 ASN VAL LEU LEU SER SER ASP GLY SER ARG ALA ALA LEU SEQRES 17 A 352 CYS ASP PHE GLY HIS ALA LEU CYS LEU GLN PRO ASP GLY SEQRES 18 A 352 LEU GLY LYS SER LEU LEU THR GLY ASP TYR ILE PRO GLY SEQRES 19 A 352 THR GLU THR HIS MET ALA PRO GLU VAL VAL MET GLY LYS SEQRES 20 A 352 PRO CYS ASP ALA LYS VAL ASP ILE TRP SER SER CYS CYS SEQRES 21 A 352 MET MET LEU HIS MET LEU ASN GLY CYS HIS PRO TRP THR SEQRES 22 A 352 GLN TYR PHE ARG GLY PRO LEU CYS LEU LYS ILE ALA SER SEQRES 23 A 352 GLU PRO PRO PRO ILE ARG GLU ILE PRO PRO SER CYS ALA SEQRES 24 A 352 PRO LEU THR ALA GLN ALA ILE GLN GLU GLY LEU ARG LYS SEQRES 25 A 352 GLU PRO VAL HIS ARG ALA SER ALA MET GLU LEU ARG ARG SEQRES 26 A 352 LYS VAL GLY LYS ALA LEU GLN GLU VAL GLY GLY LEU LYS SEQRES 27 A 352 SER PRO TRP LYS GLY GLU TYR LYS GLU PRO ARG GLY ASN SEQRES 28 A 352 SER SEQRES 1 B 352 GLY SER ALA LEU GLU LYS VAL PRO VAL GLU GLU TYR LEU SEQRES 2 B 352 VAL HIS ALA LEU GLN GLY SER VAL SER SER GLY GLN ALA SEQRES 3 B 352 HIS SER LEU ALA SER LEU ALA LYS THR TRP SER SER GLY SEQRES 4 B 352 SER ALA LYS LEU GLN ARG LEU GLY PRO GLU THR GLU ASP SEQRES 5 B 352 ASN GLU GLY VAL LEU LEU THR GLU LYS LEU LYS PRO VAL SEQRES 6 B 352 ASP TYR GLU TYR ARG GLU GLU VAL HIS TRP MET THR HIS SEQRES 7 B 352 GLN PRO ARG VAL GLY ARG GLY SER PHE GLY GLU VAL HIS SEQRES 8 B 352 ARG MET LYS ASP LYS GLN THR GLY PHE GLN CYS ALA VAL SEQRES 9 B 352 LYS LYS VAL ARG LEU GLU VAL PHE ARG VAL GLU GLU LEU SEQRES 10 B 352 VAL ALA CYS ALA GLY LEU SER SER PRO ARG ILE VAL PRO SEQRES 11 B 352 LEU TYR GLY ALA VAL ARG GLU GLY PRO TRP VAL ASN ILE SEQRES 12 B 352 PHE MET GLU LEU LEU GLU GLY GLY SER LEU GLY GLN LEU SEQRES 13 B 352 ILE LYS GLN MET GLY CYS LEU PRO GLU ASP ARG ALA LEU SEQRES 14 B 352 TYR TYR LEU GLY GLN ALA LEU GLU GLY LEU GLU TYR LEU SEQRES 15 B 352 HIS THR ARG ARG ILE LEU HIS GLY ASP VAL LYS ALA ASP SEQRES 16 B 352 ASN VAL LEU LEU SER SER ASP GLY SER ARG ALA ALA LEU SEQRES 17 B 352 CYS ASP PHE GLY HIS ALA LEU CYS LEU GLN PRO ASP GLY SEQRES 18 B 352 LEU GLY LYS SER LEU LEU THR GLY ASP TYR ILE PRO GLY SEQRES 19 B 352 THR GLU THR HIS MET ALA PRO GLU VAL VAL MET GLY LYS SEQRES 20 B 352 PRO CYS ASP ALA LYS VAL ASP ILE TRP SER SER CYS CYS SEQRES 21 B 352 MET MET LEU HIS MET LEU ASN GLY CYS HIS PRO TRP THR SEQRES 22 B 352 GLN TYR PHE ARG GLY PRO LEU CYS LEU LYS ILE ALA SER SEQRES 23 B 352 GLU PRO PRO PRO ILE ARG GLU ILE PRO PRO SER CYS ALA SEQRES 24 B 352 PRO LEU THR ALA GLN ALA ILE GLN GLU GLY LEU ARG LYS SEQRES 25 B 352 GLU PRO VAL HIS ARG ALA SER ALA MET GLU LEU ARG ARG SEQRES 26 B 352 LYS VAL GLY LYS ALA LEU GLN GLU VAL GLY GLY LEU LYS SEQRES 27 B 352 SER PRO TRP LYS GLY GLU TYR LYS GLU PRO ARG GLY ASN SEQRES 28 B 352 SER HET SO4 A 701 5 HET SO4 A 702 5 HET 0WC A 703 27 HET SO4 B 701 5 HET 0WC B 702 27 HETNAM SO4 SULFATE ION HETNAM 0WC (2R)-4-[1-(2-AMINO-5-CHLOROPYRIMIDIN-4-YL)-2,3-DIHYDRO- HETNAM 2 0WC 1H-INDOL-6-YL]-2-(1,3-THIAZOL-2-YL)BUT-3-YN-2-OL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 0WC 2(C19 H16 CL N5 O S) FORMUL 8 HOH *61(H2 O) HELIX 1 1 PRO A 334 GLN A 344 1 11 HELIX 2 2 GLN A 351 LYS A 360 1 10 HELIX 3 3 GLU A 436 PHE A 438 5 3 HELIX 4 4 ARG A 439 ALA A 445 1 7 HELIX 5 5 SER A 478 GLY A 487 1 10 HELIX 6 6 PRO A 490 ARG A 511 1 22 HELIX 7 7 LYS A 519 ASP A 521 5 3 HELIX 8 8 THR A 561 MET A 565 5 5 HELIX 9 9 ALA A 566 MET A 571 1 6 HELIX 10 10 ALA A 577 GLY A 594 1 18 HELIX 11 11 PRO A 605 GLU A 613 1 9 HELIX 12 12 PRO A 615 ILE A 620 5 6 HELIX 13 13 ALA A 625 LEU A 636 1 12 HELIX 14 14 GLU A 639 ARG A 643 5 5 HELIX 15 15 SER A 645 VAL A 660 1 16 HELIX 16 16 VAL B 335 GLN B 344 1 10 HELIX 17 17 GLN B 351 LYS B 360 1 10 HELIX 18 18 THR B 361 SER B 363 5 3 HELIX 19 19 GLU B 436 ARG B 439 5 4 HELIX 20 20 VAL B 440 ALA B 445 1 6 HELIX 21 21 SER B 478 GLY B 487 1 10 HELIX 22 22 PRO B 490 ARG B 511 1 22 HELIX 23 23 LYS B 519 ASP B 521 5 3 HELIX 24 24 THR B 561 MET B 565 5 5 HELIX 25 25 ALA B 566 MET B 571 1 6 HELIX 26 26 ALA B 577 GLY B 594 1 18 HELIX 27 27 PRO B 605 GLU B 613 1 9 HELIX 28 28 PRO B 615 ILE B 620 5 6 HELIX 29 29 ALA B 625 LEU B 636 1 12 HELIX 30 30 SER B 645 VAL B 660 1 16 SHEET 1 A 7 VAL A 347 SER A 349 0 SHEET 2 A 7 ASN A 379 LEU A 383 1 O LEU A 383 N SER A 348 SHEET 3 A 7 LEU A 457 GLU A 463 -1 O ARG A 462 N GLU A 380 SHEET 4 A 7 TRP A 466 MET A 471 -1 O ASN A 468 N VAL A 461 SHEET 5 A 7 GLN A 427 ARG A 434 -1 N LYS A 431 O ILE A 469 SHEET 6 A 7 VAL A 416 ASP A 421 -1 N MET A 419 O CYS A 428 SHEET 7 A 7 TRP A 401 THR A 403 -1 N MET A 402 O LYS A 420 SHEET 1 B 2 ILE A 513 LEU A 514 0 SHEET 2 B 2 LEU A 541 CYS A 542 -1 O LEU A 541 N LEU A 514 SHEET 1 C 2 VAL A 523 LEU A 525 0 SHEET 2 C 2 ALA A 532 LEU A 534 -1 O ALA A 533 N LEU A 524 SHEET 1 D 7 VAL B 347 SER B 349 0 SHEET 2 D 7 ASN B 379 LEU B 383 1 O GLY B 381 N SER B 348 SHEET 3 D 7 LEU B 457 GLU B 463 -1 O ARG B 462 N GLU B 380 SHEET 4 D 7 TRP B 466 MET B 471 -1 O PHE B 470 N TYR B 458 SHEET 5 D 7 GLN B 427 ARG B 434 -1 N VAL B 433 O VAL B 467 SHEET 6 D 7 VAL B 416 ASP B 421 -1 N MET B 419 O CYS B 428 SHEET 7 D 7 TRP B 401 THR B 403 -1 N MET B 402 O LYS B 420 SHEET 1 E 2 ILE B 513 LEU B 514 0 SHEET 2 E 2 LEU B 541 CYS B 542 -1 O LEU B 541 N LEU B 514 SHEET 1 F 2 VAL B 523 LEU B 525 0 SHEET 2 F 2 ALA B 532 LEU B 534 -1 O ALA B 533 N LEU B 524 SITE 1 AC1 3 MET A 647 ARG A 650 ARG A 651 SITE 1 AC2 4 ARG A 637 LYS A 638 GLU A 639 HIS A 642 SITE 1 AC3 14 ARG A 410 VAL A 416 ALA A 429 GLU A 442 SITE 2 AC3 14 VAL A 455 ILE A 469 MET A 471 GLU A 472 SITE 3 AC3 14 LEU A 474 GLN A 481 LEU A 524 CYS A 535 SITE 4 AC3 14 ASP A 536 PHE A 537 SITE 1 AC4 4 ARG B 637 LYS B 638 GLU B 639 HIS B 642 SITE 1 AC5 16 ARG B 410 GLY B 411 VAL B 416 ALA B 429 SITE 2 AC5 16 LYS B 431 GLU B 442 VAL B 455 ILE B 469 SITE 3 AC5 16 MET B 471 GLU B 472 LEU B 474 GLN B 481 SITE 4 AC5 16 LEU B 524 CYS B 535 ASP B 536 PHE B 537 CRYST1 143.145 143.145 45.151 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022148 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.732896 -0.680151 -0.016050 69.10763 1 MTRIX2 2 0.680038 0.733070 -0.012527 -30.25893 1 MTRIX3 2 0.020286 -0.001733 0.999793 -6.31223 1