HEADER TRANSFERASE 15-JUL-12 4G3Q TITLE CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS SNAPSHOT 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN GLMU; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE, N- COMPND 5 ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLUCOSAMINE-1- COMPND 6 PHOSPHATE N-ACETYLTRANSFERASE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: GLMU, MT1046, RV1018C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQEII KEYWDS ACETYLTRANSFERASE, BIFUNCTIONAL, PYROPHOSPHORYLASE, ROSSMANN-LIKE KEYWDS 2 FOLD, LEFT-HANDED-BETA-HELIX, CELL SHAPE, CELL WALL KEYWDS 3 BIOGENESIS/DEGRADATION, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 4 NUCLEOTIDYLTRANSFERASE, PEPTIDOGLYCAN SYNTHESIS, TRANSFERASE, KEYWDS 5 ACYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.JAGTAP,S.K.VERMA,B.PRAKASH REVDAT 2 20-MAR-24 4G3Q 1 REMARK SEQADV LINK REVDAT 1 07-AUG-13 4G3Q 0 JRNL AUTH P.A.JAGTAP,S.K.VERMA,B.PRAKASH JRNL TITL STRUCTURAL SNAPSHOTS OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3428 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3582 ; 0.026 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4901 ; 2.065 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 6.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;34.233 ;23.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;15.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;22.788 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.232 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2680 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2349 ; 1.331 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3787 ; 2.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1233 ; 3.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1114 ; 5.852 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 4G3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.818 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 150MM NACL, 5% GLYCEROL, REMARK 280 1,3-BUTANEDIOL,AMPPNP, MGCL2,0.1M HEPES, COCL2, DTT, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.53500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.24819 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.36667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.53500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.24819 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.36667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.53500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.24819 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.36667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.49639 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 184.73333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.49639 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 184.73333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.49639 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 184.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 77.07000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 38.53500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 66.74458 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 503 LIES ON A SPECIAL POSITION. REMARK 375 CO CO A 505 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 952 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PHE A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 481 REMARK 465 CYS A 482 REMARK 465 GLN A 483 REMARK 465 GLN A 484 REMARK 465 PRO A 485 REMARK 465 THR A 486 REMARK 465 GLN A 487 REMARK 465 PRO A 488 REMARK 465 PRO A 489 REMARK 465 ASP A 490 REMARK 465 ALA A 491 REMARK 465 ASP A 492 REMARK 465 GLN A 493 REMARK 465 THR A 494 REMARK 465 PRO A 495 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 981 O HOH A 1088 1.13 REMARK 500 CB THR A 365 O HOH A 1075 1.54 REMARK 500 O HOH A 641 O HOH A 994 1.55 REMARK 500 O HOH A 605 O HOH A 1024 1.57 REMARK 500 O HOH A 619 O HOH A 1038 1.61 REMARK 500 O HOH A 1089 O HOH A 1115 1.65 REMARK 500 O HOH A 627 O HOH A 1041 1.65 REMARK 500 CB THR A 376 O HOH A 816 1.66 REMARK 500 CB THR A 143 O HOH A 830 1.66 REMARK 500 O HOH A 639 O HOH A 1037 1.66 REMARK 500 O HOH A 621 O HOH A 1045 1.66 REMARK 500 O HOH A 607 O HOH A 1031 1.69 REMARK 500 O HOH A 817 O HOH A 1099 1.71 REMARK 500 O2 POP A 501 O HOH A 1136 1.72 REMARK 500 O HOH A 790 O HOH A 1013 1.73 REMARK 500 NE ARG A 405 O HOH A 742 1.78 REMARK 500 O HOH A 609 O HOH A 1042 1.82 REMARK 500 O HOH A 673 O HOH A 982 1.86 REMARK 500 O HOH A 709 O HOH A 1019 1.86 REMARK 500 CB ASP A 59 O HOH A 801 1.90 REMARK 500 O HOH A 752 O HOH A 1032 1.91 REMARK 500 O HOH A 796 O HOH A 1014 1.92 REMARK 500 CD ARG A 405 O HOH A 742 1.94 REMARK 500 O HOH A 698 O HOH A 1015 1.95 REMARK 500 O GLY A 390 O HOH A 1027 1.97 REMARK 500 NH2 ARG A 198 O HOH A 923 1.98 REMARK 500 O HOH A 698 O HOH A 991 2.00 REMARK 500 O HOH A 640 O HOH A 1072 2.00 REMARK 500 O HOH A 907 O HOH A 1013 2.01 REMARK 500 O HOH A 604 O HOH A 1088 2.02 REMARK 500 CZ ARG A 405 O HOH A 742 2.04 REMARK 500 O HOH A 682 O HOH A 1062 2.06 REMARK 500 O HOH A 847 O HOH A 1021 2.07 REMARK 500 N HIS A 60 O HOH A 801 2.08 REMARK 500 O HOH A 1004 O HOH A 1126 2.08 REMARK 500 O HOH A 724 O HOH A 1098 2.08 REMARK 500 O HOH A 709 O HOH A 1020 2.09 REMARK 500 O HOH A 739 O HOH A 998 2.11 REMARK 500 O HOH A 738 O HOH A 921 2.12 REMARK 500 O HOH A 809 O HOH A 1112 2.14 REMARK 500 O HOH A 1004 O HOH A 1129 2.15 REMARK 500 O HOH A 673 O HOH A 1002 2.16 REMARK 500 O HOH A 733 O HOH A 1128 2.17 REMARK 500 O HOH A 879 O HOH A 1101 2.18 REMARK 500 O ALA A 336 O HOH A 1031 2.18 REMARK 500 O HOH A 758 O HOH A 784 2.19 REMARK 500 N THR A 406 O HOH A 1044 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 455 O HOH A 1103 8654 2.04 REMARK 500 O HOH A 912 O HOH A 1117 3565 2.05 REMARK 500 O HOH A 783 O HOH A 978 2655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 303 CB VAL A 303 CG1 0.143 REMARK 500 TYR A 342 CD1 TYR A 342 CE1 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 27 CG1 - CB - CG2 ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 241 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 301 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 301 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 405 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 405 NE - CZ - NH2 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 463 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 463 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 59 -83.81 102.02 REMARK 500 HIS A 60 -30.66 17.64 REMARK 500 THR A 115 76.09 -115.14 REMARK 500 THR A 156 -174.76 -69.60 REMARK 500 SER A 328 58.78 39.67 REMARK 500 PHE A 340 62.05 69.50 REMARK 500 ASP A 352 17.88 56.51 REMARK 500 THR A 368 131.53 -39.88 REMARK 500 SER A 450 -16.57 -154.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 504 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD2 REMARK 620 2 ASN A 239 OD1 87.8 REMARK 620 3 UD1 A 506 O2A 87.9 92.9 REMARK 620 4 UD1 A 506 O1B 175.1 94.3 87.6 REMARK 620 5 HOH A1137 O 90.5 169.5 97.3 88.2 REMARK 620 6 HOH A1138 O 97.5 85.6 174.3 87.1 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 417 OD1 REMARK 620 2 HOH A 602 O 99.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 POP A 501 O5 REMARK 620 2 POP A 501 O3 93.2 REMARK 620 3 HOH A1132 O 94.8 90.6 REMARK 620 4 HOH A1133 O 85.0 174.0 83.9 REMARK 620 5 HOH A1134 O 175.8 91.0 85.1 90.8 REMARK 620 6 HOH A1135 O 88.8 85.5 174.8 100.2 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G3P RELATED DB: PDB REMARK 900 RELATED ID: 4G3S RELATED DB: PDB DBREF 4G3Q A 1 495 UNP P96382 GLMU_MYCTU 1 495 SEQADV 4G3Q HIS A -5 UNP P96382 EXPRESSION TAG SEQADV 4G3Q HIS A -4 UNP P96382 EXPRESSION TAG SEQADV 4G3Q HIS A -3 UNP P96382 EXPRESSION TAG SEQADV 4G3Q HIS A -2 UNP P96382 EXPRESSION TAG SEQADV 4G3Q HIS A -1 UNP P96382 EXPRESSION TAG SEQADV 4G3Q HIS A 0 UNP P96382 EXPRESSION TAG SEQRES 1 A 501 HIS HIS HIS HIS HIS HIS MET THR PHE PRO GLY ASP THR SEQRES 2 A 501 ALA VAL LEU VAL LEU ALA ALA GLY PRO GLY THR ARG MET SEQRES 3 A 501 ARG SER ASP THR PRO LYS VAL LEU HIS THR LEU ALA GLY SEQRES 4 A 501 ARG SER MET LEU SER HIS VAL LEU HIS ALA ILE ALA LYS SEQRES 5 A 501 LEU ALA PRO GLN ARG LEU ILE VAL VAL LEU GLY HIS ASP SEQRES 6 A 501 HIS GLN ARG ILE ALA PRO LEU VAL GLY GLU LEU ALA ASP SEQRES 7 A 501 THR LEU GLY ARG THR ILE ASP VAL ALA LEU GLN ASP ARG SEQRES 8 A 501 PRO LEU GLY THR GLY HIS ALA VAL LEU CYS GLY LEU SER SEQRES 9 A 501 ALA LEU PRO ASP ASP TYR ALA GLY ASN VAL VAL VAL THR SEQRES 10 A 501 SER GLY ASP THR PRO LEU LEU ASP ALA ASP THR LEU ALA SEQRES 11 A 501 ASP LEU ILE ALA THR HIS ARG ALA VAL SER ALA ALA VAL SEQRES 12 A 501 THR VAL LEU THR THR THR LEU ASP ASP PRO PHE GLY TYR SEQRES 13 A 501 GLY ARG ILE LEU ARG THR GLN ASP HIS GLU VAL MET ALA SEQRES 14 A 501 ILE VAL GLU GLN THR ASP ALA THR PRO SER GLN ARG GLU SEQRES 15 A 501 ILE ARG GLU VAL ASN ALA GLY VAL TYR ALA PHE ASP ILE SEQRES 16 A 501 ALA ALA LEU ARG SER ALA LEU SER ARG LEU SER SER ASN SEQRES 17 A 501 ASN ALA GLN GLN GLU LEU TYR LEU THR ASP VAL ILE ALA SEQRES 18 A 501 ILE LEU ARG SER ASP GLY GLN THR VAL HIS ALA SER HIS SEQRES 19 A 501 VAL ASP ASP SER ALA LEU VAL ALA GLY VAL ASN ASN ARG SEQRES 20 A 501 VAL GLN LEU ALA GLU LEU ALA SER GLU LEU ASN ARG ARG SEQRES 21 A 501 VAL VAL ALA ALA HIS GLN LEU ALA GLY VAL THR VAL VAL SEQRES 22 A 501 ASP PRO ALA THR THR TRP ILE ASP VAL ASP VAL THR ILE SEQRES 23 A 501 GLY ARG ASP THR VAL ILE HIS PRO GLY THR GLN LEU LEU SEQRES 24 A 501 GLY ARG THR GLN ILE GLY GLY ARG CYS VAL VAL GLY PRO SEQRES 25 A 501 ASP THR THR LEU THR ASP VAL ALA VAL GLY ASP GLY ALA SEQRES 26 A 501 SER VAL VAL ARG THR HIS GLY SER SER SER SER ILE GLY SEQRES 27 A 501 ASP GLY ALA ALA VAL GLY PRO PHE THR TYR LEU ARG PRO SEQRES 28 A 501 GLY THR ALA LEU GLY ALA ASP GLY LYS LEU GLY ALA PHE SEQRES 29 A 501 VAL GLU VAL LYS ASN SER THR ILE GLY THR GLY THR LYS SEQRES 30 A 501 VAL PRO HIS LEU THR TYR VAL GLY ASP ALA ASP ILE GLY SEQRES 31 A 501 GLU TYR SER ASN ILE GLY ALA SER SER VAL PHE VAL ASN SEQRES 32 A 501 TYR ASP GLY THR SER LYS ARG ARG THR THR VAL GLY SER SEQRES 33 A 501 HIS VAL ARG THR GLY SER ASP THR MET PHE VAL ALA PRO SEQRES 34 A 501 VAL THR ILE GLY ASP GLY ALA TYR THR GLY ALA GLY THR SEQRES 35 A 501 VAL VAL ARG GLU ASP VAL PRO PRO GLY ALA LEU ALA VAL SEQRES 36 A 501 SER ALA GLY PRO GLN ARG ASN ILE GLU ASN TRP VAL GLN SEQRES 37 A 501 ARG LYS ARG PRO GLY SER PRO ALA ALA GLN ALA SER LYS SEQRES 38 A 501 ARG ALA SER GLU MET ALA CYS GLN GLN PRO THR GLN PRO SEQRES 39 A 501 PRO ASP ALA ASP GLN THR PRO HET POP A 501 9 HET MG A 502 1 HET MG A 503 1 HET CO A 504 1 HET CO A 505 1 HET UD1 A 506 39 HETNAM POP PYROPHOSPHATE 2- HETNAM MG MAGNESIUM ION HETNAM CO COBALT (II) ION HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 2 POP H2 O7 P2 2- FORMUL 3 MG 2(MG 2+) FORMUL 5 CO 2(CO 2+) FORMUL 7 UD1 C17 H27 N3 O17 P2 FORMUL 8 HOH *544(H2 O) HELIX 1 1 GLY A 17 ARG A 21 5 5 HELIX 2 2 PRO A 25 LEU A 28 5 4 HELIX 3 3 MET A 36 ALA A 48 1 13 HELIX 4 4 ILE A 63 GLY A 75 1 13 HELIX 5 5 GLY A 88 SER A 98 1 11 HELIX 6 6 ASP A 119 VAL A 133 1 15 HELIX 7 7 GLU A 166 ALA A 170 5 5 HELIX 8 8 SER A 173 ILE A 177 5 5 HELIX 9 9 ASP A 188 SER A 197 1 10 HELIX 10 10 TYR A 209 THR A 211 5 3 HELIX 11 11 ASP A 212 ASP A 220 1 9 HELIX 12 12 ASP A 231 ALA A 236 5 6 HELIX 13 13 ASN A 240 ALA A 262 1 23 HELIX 14 14 ASP A 268 ALA A 270 5 3 HELIX 15 15 ASN A 459 ARG A 465 1 7 HELIX 16 16 SER A 468 MET A 480 1 13 LINK OD2 ASP A 114 CO CO A 504 1555 1555 2.10 LINK OD1 ASN A 239 CO CO A 504 1555 1555 2.14 LINK OD1 ASP A 417 MG MG A 503 1555 1555 2.01 LINK OD2 ASP A 417 CO CO A 505 1555 1555 1.95 LINK O5 POP A 501 MG MG A 502 1555 1555 1.98 LINK O3 POP A 501 MG MG A 502 1555 1555 2.10 LINK MG MG A 502 O HOH A1132 1555 1555 1.93 LINK MG MG A 502 O HOH A1133 1555 1555 2.30 LINK MG MG A 502 O HOH A1134 1555 1555 2.11 LINK MG MG A 502 O HOH A1135 1555 1555 1.93 LINK MG MG A 503 O HOH A 602 1555 1555 2.08 LINK CO CO A 504 O2A UD1 A 506 1555 1555 2.05 LINK CO CO A 504 O1B UD1 A 506 1555 1555 2.06 LINK CO CO A 504 O HOH A1137 1555 1555 2.22 LINK CO CO A 504 O HOH A1138 1555 1555 2.14 CISPEP 1 GLY A 305 PRO A 306 0 5.13 CISPEP 2 GLY A 338 PRO A 339 0 -1.01 CISPEP 3 ALA A 422 PRO A 423 0 -4.48 SITE 1 AC1 15 PRO A 16 GLY A 17 THR A 18 ARG A 19 SITE 2 AC1 15 MG A 502 UD1 A 506 HOH A 601 HOH A1033 SITE 3 AC1 15 HOH A1132 HOH A1133 HOH A1134 HOH A1135 SITE 4 AC1 15 HOH A1136 HOH A1143 HOH A1144 SITE 1 AC2 5 POP A 501 HOH A1132 HOH A1133 HOH A1134 SITE 2 AC2 5 HOH A1135 SITE 1 AC3 3 ASP A 417 CO A 505 HOH A 602 SITE 1 AC4 5 ASP A 114 ASN A 239 UD1 A 506 HOH A1137 SITE 2 AC4 5 HOH A1138 SITE 1 AC5 2 ASP A 417 MG A 503 SITE 1 AC6 35 LEU A 12 ALA A 13 ALA A 14 GLY A 15 SITE 2 AC6 35 ARG A 19 LYS A 26 GLN A 83 PRO A 86 SITE 3 AC6 35 LEU A 87 GLY A 88 THR A 89 ALA A 92 SITE 4 AC6 35 SER A 112 GLY A 113 ASP A 114 TYR A 150 SITE 5 AC6 35 GLY A 151 GLU A 166 ASN A 181 ALA A 182 SITE 6 AC6 35 TYR A 209 THR A 211 ASN A 239 POP A 501 SITE 7 AC6 35 CO A 504 HOH A 624 HOH A 643 HOH A 670 SITE 8 AC6 35 HOH A 791 HOH A1034 HOH A1036 HOH A1133 SITE 9 AC6 35 HOH A1137 HOH A1138 HOH A1143 CRYST1 77.070 77.070 277.100 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012975 0.007491 0.000000 0.00000 SCALE2 0.000000 0.014982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003609 0.00000