HEADER PEPTIDOGLYCAN-BINDING PROTEIN 17-JUL-12 4G54 TITLE CRYSTAL STRUCTURE OF A PERIPLASMIC DOMAIN OF THE EPSAB FUSION PROTEIN TITLE 2 OF THE VIBRIO VULNIFICUS TYPE II SECRETION SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL SECRETION PATHWAY PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672 KEYWDS TYPE 2 SECRETION SYSTEM PROTEIN, PEPTIDOGLYCAN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MARTYNNOWSKI,P.GROCHULSKI,S.P.HOWARD REVDAT 2 27-MAR-13 4G54 1 JRNL REVDAT 1 30-JAN-13 4G54 0 JRNL AUTH D.MARTYNOWSKI,P.GROCHULSKI,P.S.HOWARD JRNL TITL STRUCTURE OF A PERIPLASMIC DOMAIN OF THE EPSAB FUSION JRNL TITL 2 PROTEIN OF THE VIBRIO VULNIFICUS TYPE II SECRETION SYSTEM. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 142 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23385451 JRNL DOI 10.1107/S0907444912042710 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 35030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1870 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2542 ; 2.307 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.732 ;23.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;16.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1415 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 1.410 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1800 ; 2.472 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 759 ; 4.020 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 742 ; 6.610 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 343 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9531 -8.2065 -4.5674 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.0964 REMARK 3 T33: 0.0294 T12: -0.0114 REMARK 3 T13: 0.0210 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.3430 L22: 1.3955 REMARK 3 L33: 1.8827 L12: -0.9470 REMARK 3 L13: 0.8911 L23: -0.4607 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.2829 S13: -0.1584 REMARK 3 S21: -0.1640 S22: -0.0016 S23: -0.0584 REMARK 3 S31: 0.2036 S32: -0.0078 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 378 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8816 -3.7789 7.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.1011 REMARK 3 T33: 0.0524 T12: -0.0150 REMARK 3 T13: 0.0080 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.9939 L22: 0.9418 REMARK 3 L33: 1.1959 L12: -0.5241 REMARK 3 L13: 0.8679 L23: -0.2439 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.1563 S13: -0.0277 REMARK 3 S21: 0.0137 S22: 0.0570 S23: 0.0192 REMARK 3 S31: 0.1234 S32: -0.2031 S33: 0.0009 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 405 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4694 -4.6171 -3.9313 REMARK 3 T TENSOR REMARK 3 T11: 0.0628 T22: 0.1262 REMARK 3 T33: 0.0565 T12: -0.0355 REMARK 3 T13: -0.0172 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 5.1408 L22: 2.2701 REMARK 3 L33: 1.8645 L12: -1.3682 REMARK 3 L13: 0.0207 L23: 0.3629 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: 0.2318 S13: -0.3478 REMARK 3 S21: -0.2087 S22: -0.1072 S23: 0.2252 REMARK 3 S31: 0.1516 S32: -0.2634 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 426 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3298 -0.8959 -5.3375 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.1315 REMARK 3 T33: 0.0518 T12: -0.0180 REMARK 3 T13: -0.0004 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.6869 L22: 1.5192 REMARK 3 L33: 1.1023 L12: -0.2197 REMARK 3 L13: 0.8207 L23: -0.2637 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.2202 S13: 0.0490 REMARK 3 S21: -0.0879 S22: -0.0042 S23: 0.1019 REMARK 3 S31: 0.0640 S32: -0.1990 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 531 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1718 6.1746 21.3149 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0473 REMARK 3 T33: 0.0722 T12: -0.0020 REMARK 3 T13: 0.0072 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4402 L22: 1.5220 REMARK 3 L33: 0.8831 L12: -0.0303 REMARK 3 L13: 0.1813 L23: 0.5347 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0102 S13: 0.0165 REMARK 3 S21: -0.0198 S22: 0.0357 S23: -0.0954 REMARK 3 S31: -0.0194 S32: 0.0388 S33: -0.0353 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 532 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0525 10.4242 -5.6004 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.1311 REMARK 3 T33: 0.2772 T12: -0.0690 REMARK 3 T13: -0.0008 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 6.2547 L22: 3.2931 REMARK 3 L33: 12.9832 L12: 4.4125 REMARK 3 L13: -5.1500 L23: -4.8785 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: 0.4007 S13: 1.0055 REMARK 3 S21: -0.0979 S22: 0.3897 S23: 0.6422 REMARK 3 S31: -0.0319 S32: -0.7099 S33: -0.2707 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 551 A 570 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2678 -1.2040 3.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.1132 REMARK 3 T33: 0.1942 T12: -0.0276 REMARK 3 T13: 0.0211 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.4750 L22: 0.3442 REMARK 3 L33: 6.5165 L12: 0.0989 REMARK 3 L13: 2.4385 L23: 1.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.1331 S12: 0.1959 S13: 0.2188 REMARK 3 S21: 0.0276 S22: 0.1054 S23: -0.1441 REMARK 3 S31: -0.0457 S32: 0.5255 S33: 0.0277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4G54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB073749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 87 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 220 MM CALCIUM CHLORIDE, 20% PEG3350, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.41050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.41050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 VAL A 333 REMARK 465 PRO A 334 REMARK 465 ALA A 335 REMARK 465 ILE A 336 REMARK 465 LEU A 337 REMARK 465 VAL A 338 REMARK 465 ASN A 339 REMARK 465 ASP A 340 REMARK 465 GLU A 341 REMARK 465 GLN A 342 REMARK 465 ALA A 541 REMARK 465 GLU A 542 REMARK 465 LYS A 543 REMARK 465 GLN A 544 REMARK 465 GLY A 545 REMARK 465 GLY A 571 REMARK 465 ASP A 572 REMARK 465 VAL A 573 REMARK 465 ILE A 574 REMARK 465 ASN A 575 REMARK 465 VAL A 576 REMARK 465 ALA A 577 REMARK 465 ASP A 578 REMARK 465 GLN A 579 REMARK 465 THR A 580 REMARK 465 SER A 581 REMARK 465 PRO A 582 REMARK 465 THR A 583 REMARK 465 LEU A 584 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 363 CD1 TYR A 363 CE1 0.098 REMARK 500 PHE A 504 CZ PHE A 504 CE2 0.123 REMARK 500 MET A 510 SD MET A 510 CE -0.346 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 435 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 435 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 500 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 500 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LEU A 562 CB - CG - CD2 ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 344 -124.57 52.50 REMARK 500 GLU A 346 73.38 -115.58 REMARK 500 GLU A 411 63.91 33.30 REMARK 500 GLU A 433 -33.60 -133.18 REMARK 500 ASP A 485 -155.54 -143.38 REMARK 500 GLU A 547 -164.28 -120.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 4G54 A 326 584 PDB 4G54 4G54 326 584 SEQRES 1 A 258 MET HIS HIS HIS HIS HIS HIS VAL PRO ALA ILE LEU VAL SEQRES 2 A 258 ASN ASP GLU GLN TRP LEU GLY GLU SER ALA VAL ALA ARG SEQRES 3 A 258 MET THR THR ARG ALA GLN GLY LEU GLU GLU LEU TYR LYS SEQRES 4 A 258 LEU TRP GLY TYR ARG ALA THR ARG ILE ASP THR MET CYS SEQRES 5 A 258 GLU GLN PRO SER THR SER ILE PHE GLN CYS GLN VAL ARG SEQRES 6 A 258 GLN LEU ASN TRP GLN GLU LEU GLN GLN THR PRO HIS PRO SEQRES 7 A 258 LEU LEU LEU THR LEU GLN HIS GLU GLY GLN ARG ALA TYR SEQRES 8 A 258 VAL VAL LEU LEU GLU VAL ASP PRO GLU ARG VAL VAL LEU SEQRES 9 A 258 LEU THR GLY GLU GLN ARG LEU THR PHE THR VAL SER GLN SEQRES 10 A 258 LEU MET SER LEU TRP ARG GLY GLU VAL THR ASP LEU TRP SEQRES 11 A 258 PRO MET PRO LEU ARG GLU THR LEU ARG LEU GLY MET HIS SEQRES 12 A 258 GLY GLU ALA ILE GLU VAL LEU ASP GLN LEU LEU ALA LYS SEQRES 13 A 258 ALA LEU ASN ASP GLU PRO LEU LYS THR THR GLN PHE ASN SEQRES 14 A 258 ALA GLU LEU MET GLN ARG VAL GLU TRP PHE GLN ARG TRP SEQRES 15 A 258 GLN ALA MET THR GLU ASP GLY ILE ALA GLY GLN ARG THR SEQRES 16 A 258 LEU ALA ARG LEU GLN HIS MET VAL SER LEU SER GLU PRO SEQRES 17 A 258 TRP ARG ALA LEU THR GLN ALA GLU LYS GLN GLY GLU GLU SEQRES 18 A 258 GLN VAL MET ARG TYR PRO GLU PHE PRO SER LEU ALA PRO SEQRES 19 A 258 LEU LEU ARG THR TYR PRO LEU ALA GLU THR GLY ASP VAL SEQRES 20 A 258 ILE ASN VAL ALA ASP GLN THR SER PRO THR LEU FORMUL 2 HOH *253(H2 O) HELIX 1 1 GLU A 346 ARG A 351 5 6 HELIX 2 2 THR A 354 TRP A 366 1 13 HELIX 3 3 ILE A 373 CYS A 377 5 5 HELIX 4 4 ASN A 393 GLN A 399 1 7 HELIX 5 5 VAL A 440 LEU A 446 1 7 HELIX 6 6 GLY A 469 ASN A 484 1 16 HELIX 7 7 ASN A 494 GLN A 508 1 15 HELIX 8 8 GLY A 517 VAL A 528 1 12 HELIX 9 9 GLU A 532 THR A 538 5 7 SHEET 1 A 2 TYR A 368 ARG A 369 0 SHEET 2 A 2 ALA A 559 PRO A 560 1 O ALA A 559 N ARG A 369 SHEET 1 B 6 PHE A 385 GLN A 391 0 SHEET 2 B 6 TRP A 447 PRO A 456 -1 O ASP A 453 N GLN A 388 SHEET 3 B 6 LEU A 404 HIS A 410 -1 N LEU A 405 O THR A 452 SHEET 4 B 6 GLN A 413 VAL A 422 -1 O LEU A 419 N LEU A 404 SHEET 5 B 6 ARG A 426 LEU A 430 -1 O VAL A 428 N LEU A 420 SHEET 6 B 6 ARG A 435 THR A 439 -1 O LEU A 436 N LEU A 429 SSBOND 1 CYS A 377 CYS A 387 1555 1555 2.14 CISPEP 1 GLN A 379 PRO A 380 0 2.48 CISPEP 2 GLU A 546 GLU A 547 0 10.54 CISPEP 3 TYR A 552 PRO A 553 0 13.00 CRYST1 128.821 44.523 51.040 90.00 110.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007763 0.000000 0.002916 0.00000 SCALE2 0.000000 0.022460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020929 0.00000