HEADER ENDOCYTOSIS 17-JUL-12 4G55 TITLE CLATHRIN TERMINAL DOMAIN COMPLEXED WITH PITSTOP 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: CLATHRIN HEAVY CHAIN ON CHROMOSOME 17, CLH-17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLH17, CLTC, CLTCL2, KIAA0034; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS BETA-PROPELLER, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR H.BULUT,L.VON KLEIST,W.SAENGER,V.HAUCKE REVDAT 3 28-FEB-24 4G55 1 REMARK SEQADV REVDAT 2 16-APR-14 4G55 1 REMARK REVDAT 1 01-AUG-12 4G55 0 SPRSDE 01-AUG-12 4G55 2XZH JRNL AUTH L.VON KLEIST,W.STAHLSCHMIDT,H.BULUT,K.GROMOVA,D.PUCHKOV, JRNL AUTH 2 M.J.ROBERTSON,K.A.MACGREGOR,N.TOMILIN,N.TOMLIN,A.PECHSTEIN, JRNL AUTH 3 N.CHAU,M.CHIRCOP,J.SAKOFF,J.P.VON KRIES,W.SAENGER, JRNL AUTH 4 H.G.KRAUSSLICH,O.SHUPLIAKOV,P.J.ROBINSON,A.MCCLUSKEY, JRNL AUTH 5 V.HAUCKE JRNL TITL ROLE OF THE CLATHRIN TERMINAL DOMAIN IN REGULATING COATED JRNL TITL 2 PIT DYNAMICS REVEALED BY SMALL MOLECULE INHIBITION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 146 471 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21816279 JRNL DOI 10.1016/J.CELL.2011.06.025 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3177 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -1.09000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.901 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3019 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2027 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4079 ; 2.103 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4965 ; 1.069 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.615 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;36.907 ;24.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;12.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.342 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3345 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 583 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4G55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 33.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 150 MM POTASSIUM REMARK 280 ACETATE, 0.1 M TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.44950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.05900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.05900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.44950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 ALA A 358 REMARK 465 GLY A 359 REMARK 465 ALA A 360 REMARK 465 GLU A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 PHE A 364 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 96 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 96 CA LYS A 96 CB 0.156 REMARK 500 TRP A 113 CE2 TRP A 113 CD2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 56.18 -152.38 REMARK 500 ASN A 60 65.57 -113.50 REMARK 500 ALA A 76 -38.37 -131.50 REMARK 500 LYS A 96 56.17 38.84 REMARK 500 MET A 99 -60.90 -90.84 REMARK 500 MET A 99 -60.90 -102.02 REMARK 500 GLN A 174 -108.41 68.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VH2 A 418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XZG RELATED DB: PDB REMARK 900 CLATHRIN TERMINAL DOMAIN COMPLEXED WITH PITSTOP 1 DBREF 4G55 A 1 364 UNP Q00610 CLH1_HUMAN 1 364 SEQADV 4G55 GLY A -4 UNP Q00610 EXPRESSION TAG SEQADV 4G55 SER A -3 UNP Q00610 EXPRESSION TAG SEQADV 4G55 PRO A -2 UNP Q00610 EXPRESSION TAG SEQADV 4G55 GLU A -1 UNP Q00610 EXPRESSION TAG SEQADV 4G55 PHE A 0 UNP Q00610 EXPRESSION TAG SEQRES 1 A 369 GLY SER PRO GLU PHE MET ALA GLN ILE LEU PRO ILE ARG SEQRES 2 A 369 PHE GLN GLU HIS LEU GLN LEU GLN ASN LEU GLY ILE ASN SEQRES 3 A 369 PRO ALA ASN ILE GLY PHE SER THR LEU THR MET GLU SER SEQRES 4 A 369 ASP LYS PHE ILE CYS ILE ARG GLU LYS VAL GLY GLU GLN SEQRES 5 A 369 ALA GLN VAL VAL ILE ILE ASP MET ASN ASP PRO SER ASN SEQRES 6 A 369 PRO ILE ARG ARG PRO ILE SER ALA ASP SER ALA ILE MET SEQRES 7 A 369 ASN PRO ALA SER LYS VAL ILE ALA LEU LYS ALA GLY LYS SEQRES 8 A 369 THR LEU GLN ILE PHE ASN ILE GLU MET LYS SER LYS MET SEQRES 9 A 369 LYS ALA HIS THR MET THR ASP ASP VAL THR PHE TRP LYS SEQRES 10 A 369 TRP ILE SER LEU ASN THR VAL ALA LEU VAL THR ASP ASN SEQRES 11 A 369 ALA VAL TYR HIS TRP SER MET GLU GLY GLU SER GLN PRO SEQRES 12 A 369 VAL LYS MET PHE ASP ARG HIS SER SER LEU ALA GLY CYS SEQRES 13 A 369 GLN ILE ILE ASN TYR ARG THR ASP ALA LYS GLN LYS TRP SEQRES 14 A 369 LEU LEU LEU THR GLY ILE SER ALA GLN GLN ASN ARG VAL SEQRES 15 A 369 VAL GLY ALA MET GLN LEU TYR SER VAL ASP ARG LYS VAL SEQRES 16 A 369 SER GLN PRO ILE GLU GLY HIS ALA ALA SER PHE ALA GLN SEQRES 17 A 369 PHE LYS MET GLU GLY ASN ALA GLU GLU SER THR LEU PHE SEQRES 18 A 369 CYS PHE ALA VAL ARG GLY GLN ALA GLY GLY LYS LEU HIS SEQRES 19 A 369 ILE ILE GLU VAL GLY THR PRO PRO THR GLY ASN GLN PRO SEQRES 20 A 369 PHE PRO LYS LYS ALA VAL ASP VAL PHE PHE PRO PRO GLU SEQRES 21 A 369 ALA GLN ASN ASP PHE PRO VAL ALA MET GLN ILE SER GLU SEQRES 22 A 369 LYS HIS ASP VAL VAL PHE LEU ILE THR LYS TYR GLY TYR SEQRES 23 A 369 ILE HIS LEU TYR ASP LEU GLU THR GLY THR CYS ILE TYR SEQRES 24 A 369 MET ASN ARG ILE SER GLY GLU THR ILE PHE VAL THR ALA SEQRES 25 A 369 PRO HIS GLU ALA THR ALA GLY ILE ILE GLY VAL ASN ARG SEQRES 26 A 369 LYS GLY GLN VAL LEU SER VAL CYS VAL GLU GLU GLU ASN SEQRES 27 A 369 ILE ILE PRO TYR ILE THR ASN VAL LEU GLN ASN PRO ASP SEQRES 28 A 369 LEU ALA LEU ARG MET ALA VAL ARG ASN ASN LEU ALA GLY SEQRES 29 A 369 ALA GLU GLU LEU PHE HET DMS A 401 4 HET DMS A 402 4 HET DMS A 403 4 HET ACT A 404 4 HET ACT A 405 4 HET ACT A 406 4 HET ACT A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET PEG A 410 7 HET PEG A 411 7 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET DMS A 415 4 HET EDO A 416 4 HET ACT A 417 4 HET VH2 A 418 28 HETNAM DMS DIMETHYL SULFOXIDE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM VH2 N-[5-[(4-BROMOPHENYL)METHYL]-4-HYDROXY-1,3-THIAZOL-2- HETNAM 2 VH2 YL]NAPHTHALENE-1-SULFONAMIDE HETSYN EDO ETHYLENE GLYCOL HETSYN VH2 PITSTOP 2 FORMUL 2 DMS 4(C2 H6 O S) FORMUL 5 ACT 5(C2 H3 O2 1-) FORMUL 9 EDO 6(C2 H6 O2) FORMUL 11 PEG 2(C4 H10 O3) FORMUL 19 VH2 C20 H15 BR N2 O3 S2 FORMUL 20 HOH *407(H2 O) HELIX 1 1 GLN A 16 GLY A 19 5 4 HELIX 2 2 ASN A 21 ILE A 25 5 5 HELIX 3 3 HIS A 145 ALA A 149 5 5 HELIX 4 4 GLU A 310 ALA A 313 5 4 HELIX 5 5 ASN A 333 VAL A 341 1 9 HELIX 6 6 ASN A 344 ASN A 355 1 12 SHEET 1 A 4 ILE A 7 GLN A 14 0 SHEET 2 A 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 A 4 GLY A 314 ASN A 319 -1 N GLY A 317 O LEU A 325 SHEET 4 A 4 ILE A 303 HIS A 309 -1 N ALA A 307 O ILE A 316 SHEET 1 B 4 LEU A 30 SER A 34 0 SHEET 2 B 4 PHE A 37 VAL A 44 -1 O CYS A 39 N THR A 31 SHEET 3 B 4 GLN A 47 ASP A 54 -1 O ILE A 53 N ILE A 38 SHEET 4 B 4 ILE A 62 PRO A 65 -1 O ILE A 62 N ILE A 52 SHEET 1 C 4 SER A 70 MET A 73 0 SHEET 2 C 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 C 4 THR A 87 ASN A 92 -1 O PHE A 91 N ILE A 80 SHEET 4 C 4 SER A 97 THR A 103 -1 O SER A 97 N ASN A 92 SHEET 1 D 4 VAL A 108 TRP A 113 0 SHEET 2 D 4 THR A 118 THR A 123 -1 O ALA A 120 N LYS A 112 SHEET 3 D 4 ALA A 126 SER A 131 -1 O TYR A 128 N LEU A 121 SHEET 4 D 4 VAL A 139 ASP A 143 -1 O MET A 141 N VAL A 127 SHEET 1 E 4 GLN A 152 THR A 158 0 SHEET 2 E 4 TRP A 164 GLN A 173 -1 O LEU A 166 N ARG A 157 SHEET 3 E 4 ARG A 176 SER A 185 -1 O ALA A 180 N GLY A 169 SHEET 4 E 4 VAL A 190 ILE A 194 -1 O ILE A 194 N MET A 181 SHEET 1 F 4 ALA A 198 PHE A 204 0 SHEET 2 F 4 SER A 213 GLY A 222 -1 O LEU A 215 N ALA A 202 SHEET 3 F 4 GLY A 225 GLU A 232 -1 O ILE A 231 N PHE A 216 SHEET 4 F 4 LYS A 246 VAL A 250 -1 O LYS A 246 N ILE A 230 SHEET 1 G 4 PRO A 261 SER A 267 0 SHEET 2 G 4 VAL A 272 THR A 277 -1 O PHE A 274 N GLN A 265 SHEET 3 G 4 TYR A 281 ASP A 286 -1 O HIS A 283 N LEU A 275 SHEET 4 G 4 CYS A 292 ARG A 297 -1 O ASN A 296 N ILE A 282 SITE 1 AC1 5 PHE A 27 THR A 31 PHE A 110 TRP A 111 SITE 2 AC1 5 HOH A 894 SITE 1 AC2 8 ARG A 176 VAL A 177 ARG A 221 GLN A 257 SITE 2 AC2 8 ASN A 258 ASP A 259 HOH A 805 HOH A 875 SITE 1 AC3 5 ILE A 66 LYS A 98 GLN A 174 VH2 A 418 SITE 2 AC3 5 HOH A 899 SITE 1 AC4 3 HIS A 145 SER A 146 HOH A 897 SITE 1 AC5 3 ASN A 175 GLN A 257 ASN A 258 SITE 1 AC6 4 SER A 136 GLN A 137 GLY A 239 HOH A 690 SITE 1 AC7 4 LYS A 140 MET A 141 HOH A 699 HOH A 745 SITE 1 AC8 5 SER A 67 LEU A 82 THR A 87 GLN A 89 SITE 2 AC8 5 HOH A 899 SITE 1 AC9 2 ARG A 297 GLY A 300 SITE 1 BC1 5 GLN A 203 LYS A 205 GLU A 268 ASP A 271 SITE 2 BC1 5 ARG A 354 SITE 1 BC2 4 TYR A 294 MET A 295 HOH A 873 HOH A 902 SITE 1 BC3 3 ASN A 92 MET A 99 GLU A 133 SITE 1 BC4 8 LYS A 112 ALA A 263 VAL A 305 THR A 306 SITE 2 BC4 8 HOH A 716 HOH A 809 HOH A 811 HOH A 844 SITE 1 BC5 5 MET A 104 THR A 105 ASP A 106 TYR A 128 SITE 2 BC5 5 THR A 238 SITE 1 BC6 6 MET A 99 LYS A 100 ALA A 101 GLY A 134 SITE 2 BC6 6 GLU A 135 HOH A 898 SITE 1 BC7 5 PHE A 251 PHE A 252 HOH A 801 HOH A 895 SITE 2 BC7 5 HOH A 896 SITE 1 BC8 14 GLN A 3 ILE A 4 VAL A 50 ILE A 52 SITE 2 BC8 14 ARG A 64 PHE A 91 ILE A 93 LYS A 96 SITE 3 BC8 14 LYS A 98 GLN A 174 ASN A 333 DMS A 403 SITE 4 BC8 14 HOH A 653 HOH A 907 CRYST1 70.899 74.019 82.118 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012178 0.00000