HEADER TRANSFERASE 18-JUL-12 4G67 TITLE CRYSTAL STRUCTURE OF A COG1565 SUPERFAMILY MEMBER AND LIKELY METHYL TITLE 2 TRANSFERASE FROM BURKHOLDERIA THAILANDENSIS BOUND TO S-ADENOSYL- TITLE 3 HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED ACR, COG1565 SUPERFAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264; SOURCE 5 GENE: BTH I0294, BTH_I0294; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, METHYLTRANSFERASE SUPERFAMILY, S- KEYWDS 4 ADENOSYL METHIONINE, SAM, ADOMET, SAH, ADOHCY, TRANSFERASE, NATURAL KEYWDS 5 INHIBITOR, CANDIDATE ESSENTIAL GENE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 28-FEB-24 4G67 1 REMARK SEQADV REVDAT 2 30-OCT-13 4G67 1 JRNL REVDAT 1 01-AUG-12 4G67 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3020 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2820 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4114 ; 1.521 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6442 ; 0.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 5.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;31.395 ;22.256 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;12.419 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3520 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 727 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8506 -5.4201 -30.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0241 REMARK 3 T33: 0.0438 T12: 0.0013 REMARK 3 T13: -0.0064 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2018 L22: 0.2367 REMARK 3 L33: 0.3873 L12: -0.1522 REMARK 3 L13: 0.0641 L23: 0.0529 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0295 S13: 0.0424 REMARK 3 S21: 0.0211 S22: -0.0096 S23: 0.0014 REMARK 3 S31: 0.0365 S32: 0.0201 S33: 0.0311 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0669 -9.2635 -7.9248 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0405 REMARK 3 T33: 0.0083 T12: 0.0090 REMARK 3 T13: -0.0084 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.7524 L22: 0.5618 REMARK 3 L33: 0.2710 L12: 0.1094 REMARK 3 L13: -0.0323 L23: -0.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0659 S13: 0.0153 REMARK 3 S21: 0.0626 S22: 0.0147 S23: -0.0418 REMARK 3 S31: 0.0057 S32: -0.0104 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6224 -15.1153 -42.6242 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0339 REMARK 3 T33: 0.0025 T12: -0.0043 REMARK 3 T13: -0.0049 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.9510 L22: 0.1446 REMARK 3 L33: 0.4036 L12: -0.3663 REMARK 3 L13: -0.2105 L23: 0.1151 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.1231 S13: -0.0366 REMARK 3 S21: -0.0057 S22: -0.0421 S23: 0.0142 REMARK 3 S31: 0.0905 S32: 0.0084 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2014 -7.0549 -22.7708 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.0375 REMARK 3 T33: 0.0249 T12: 0.0030 REMARK 3 T13: -0.0089 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.1265 L22: 0.2759 REMARK 3 L33: 0.2624 L12: 0.0353 REMARK 3 L13: -0.1750 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.0195 S13: -0.0005 REMARK 3 S21: 0.0179 S22: -0.0108 S23: 0.0017 REMARK 3 S31: -0.0036 S32: -0.0419 S33: 0.0054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4G67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35828 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUTHA.17973.A.A1 PS01383 AT 20 MG/ML REMARK 280 WITH 2 MM SAH AGAINST JCSG+ H7 FOCUS SCREEN, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M BISTRIS, 18% PEG 3350 AND 15% ETHYLENE GLYCOL AS REMARK 280 CRYO-PROTECTANT, CRYSTAL TRACKING ID 234263H3, UNIQUE PUCK ID REMARK 280 XGV5-2, PH 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.89500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.89500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ALA A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 GLN A -7 REMARK 465 THR A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 TYR A 11 REMARK 465 ASN A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 MET A 15 REMARK 465 ASN A 16 REMARK 465 PRO A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 HIS A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 ARG A 287 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 GLN A 291 CG CD OE1 NE2 REMARK 470 GLN A 373 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 403 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 117 28.68 -149.47 REMARK 500 ALA A 168 50.30 -147.72 REMARK 500 TYR A 309 64.01 36.53 REMARK 500 GLU A 380 -112.69 -118.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F3N RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 1ZKD RELATED DB: PDB REMARK 900 RELATED UNCHARACTERIZED PROTEIN REMARK 900 RELATED ID: BUTHA.17973.A RELATED DB: TARGETTRACK DBREF 4G67 A 0 410 UNP Q2T1U7 Q2T1U7_BURTA 1 410 SEQADV 4G67 MET A -21 UNP Q2T1U7 INITIATING METHIONINE SEQADV 4G67 ALA A -20 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 HIS A -19 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 HIS A -18 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 HIS A -17 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 HIS A -16 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 HIS A -15 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 HIS A -14 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 MET A -13 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 GLY A -12 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 THR A -11 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 LEU A -10 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 GLU A -9 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 ALA A -8 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 GLN A -7 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 THR A -6 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 GLN A -5 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 GLY A -4 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 PRO A -3 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 GLY A -2 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 SER A -1 UNP Q2T1U7 EXPRESSION TAG SEQADV 4G67 VAL A 1 UNP Q2T1U7 EXPRESSION TAG SEQRES 1 A 432 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 432 ALA GLN THR GLN GLY PRO GLY SER MET VAL SER GLN VAL SEQRES 3 A 432 SER ALA GLY THR VAL ILE TYR ASN ALA GLY MET ASN PRO SEQRES 4 A 432 LYS ALA HIS GLU PRO ALA SER LEU PRO VAL PRO GLY PRO SEQRES 5 A 432 ASP ALA LEU ALA GLN SER GLU ALA LEU ALA ALA SER LEU SEQRES 6 A 432 ARG ALA GLU ILE ALA SER ALA GLY GLY TRP ILE PRO PHE SEQRES 7 A 432 SER ARG TYR MET GLU ARG VAL LEU TYR ALA PRO GLY MET SEQRES 8 A 432 GLY TYR TYR SER GLY GLY ALA GLN LYS PHE GLY ARG ARG SEQRES 9 A 432 ALA ASP ASP GLY SER ASP PHE VAL THR ALA PRO GLU LEU SEQRES 10 A 432 SER PRO LEU PHE ALA GLN THR LEU ALA ARG PRO VAL ALA SEQRES 11 A 432 GLN ALA LEU ASP ALA SER GLY THR ARG ARG VAL MET GLU SEQRES 12 A 432 PHE GLY ALA GLY THR GLY LYS LEU ALA ALA GLY LEU LEU SEQRES 13 A 432 THR ALA LEU ALA ALA LEU GLY VAL GLU LEU ASP GLU TYR SEQRES 14 A 432 ALA ILE VAL ASP LEU SER GLY GLU LEU ARG ALA ARG GLN SEQRES 15 A 432 ARG GLU THR LEU GLY ALA GLN ALA PRO GLY LEU ALA ALA SEQRES 16 A 432 ARG VAL ARG TRP LEU ASP ALA LEU PRO GLU ARG PHE GLU SEQRES 17 A 432 GLY VAL VAL VAL GLY ASN GLU VAL LEU ASP ALA MET PRO SEQRES 18 A 432 VAL ARG LEU VAL ALA LYS GLN ALA ARG GLY TRP CYS GLU SEQRES 19 A 432 ARG GLY VAL SER ILE ASP ASP ALA GLY ALA PHE VAL PHE SEQRES 20 A 432 ALA ASP ARG PRO PHE ALA ARG ALA GLU GLU ALA ALA ARG SEQRES 21 A 432 LEU ALA GLY ILE ASP ALA ASP GLU GLY TYR VAL THR GLU SEQRES 22 A 432 THR HIS ASP ALA ALA VAL ALA PHE VAL ARG THR VAL CYS SEQRES 23 A 432 ALA MET LEU ALA ARG GLY ALA ALA PHE PHE ILE ASP TYR SEQRES 24 A 432 GLY PHE PRO SER HIS GLU TYR TYR HIS ARG GLN ARG ALA SEQRES 25 A 432 GLN GLY THR LEU MET CYS HIS TYR ARG HIS ARG ALA HIS SEQRES 26 A 432 GLY ASP PRO PHE VAL TYR PRO GLY LEU GLN ASP ILE THR SEQRES 27 A 432 ALA HIS VAL GLU PHE SER ALA ILE HIS GLU ALA GLY VAL SEQRES 28 A 432 GLY ALA GLY ALA ASP LEU LEU GLY TYR THR SER GLN ALA SEQRES 29 A 432 ARG PHE LEU LEU ASN ALA GLY ILE THR ASP VAL LEU ALA SEQRES 30 A 432 GLU ILE ASP PRO SER ASP ALA GLN HIS PHE LEU PRO ALA SEQRES 31 A 432 ALA ASN ALA VAL GLN LYS LEU ILE SER GLU ALA GLU MET SEQRES 32 A 432 GLY GLU LEU PHE LYS VAL ILE ALA PHE SER ARG GLY ILE SEQRES 33 A 432 ASP GLY ALA LEU ASP ALA PHE ALA ARG GLY ASP ARG SER SEQRES 34 A 432 HIS THR LEU HET SAH A 501 26 HET EDO A 502 4 HET EDO A 503 4 HET SO4 A 504 5 HET SO4 A 505 5 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *365(H2 O) HELIX 1 1 GLY A 29 ALA A 50 1 22 HELIX 2 2 PHE A 56 ALA A 66 1 11 HELIX 3 3 ARG A 82 GLY A 86 5 5 HELIX 4 4 THR A 91 SER A 96 1 6 HELIX 5 5 PRO A 97 GLY A 115 1 19 HELIX 6 6 GLY A 127 LEU A 140 1 14 HELIX 7 7 LEU A 156 ALA A 168 1 13 HELIX 8 8 LEU A 171 ALA A 173 5 3 HELIX 9 9 VAL A 194 MET A 198 5 5 HELIX 10 10 ALA A 233 ARG A 238 1 6 HELIX 11 11 HIS A 253 MET A 266 1 14 HELIX 12 12 PRO A 280 TYR A 285 1 6 HELIX 13 13 PHE A 321 ALA A 331 1 11 HELIX 14 14 GLN A 341 GLY A 349 1 9 HELIX 15 15 GLY A 349 GLU A 356 1 8 HELIX 16 16 ASP A 361 SER A 377 1 17 HELIX 17 17 LEU A 398 ALA A 402 5 5 HELIX 18 18 ARG A 406 LEU A 410 5 5 SHEET 1 A 3 ILE A 54 PRO A 55 0 SHEET 2 A 3 TRP A 210 ILE A 217 -1 O VAL A 215 N ILE A 54 SHEET 3 A 3 PHE A 223 ARG A 228 -1 O ALA A 226 N GLY A 214 SHEET 1 B 4 ILE A 54 PRO A 55 0 SHEET 2 B 4 TRP A 210 ILE A 217 -1 O VAL A 215 N ILE A 54 SHEET 3 B 4 ARG A 201 LYS A 205 -1 N ALA A 204 O CYS A 211 SHEET 4 B 4 VAL A 249 THR A 252 -1 O THR A 250 N VAL A 203 SHEET 1 C 6 VAL A 175 TRP A 177 0 SHEET 2 C 6 GLU A 146 VAL A 150 1 N ILE A 149 O ARG A 176 SHEET 3 C 6 ARG A 118 PHE A 122 1 N GLU A 121 O VAL A 150 SHEET 4 C 6 PHE A 185 ASN A 192 1 O VAL A 190 N MET A 120 SHEET 5 C 6 LEU A 267 PHE A 279 1 O ALA A 268 N PHE A 185 SHEET 6 C 6 VAL A 319 GLU A 320 1 O VAL A 319 N TYR A 277 SHEET 1 D 7 VAL A 175 TRP A 177 0 SHEET 2 D 7 GLU A 146 VAL A 150 1 N ILE A 149 O ARG A 176 SHEET 3 D 7 ARG A 118 PHE A 122 1 N GLU A 121 O VAL A 150 SHEET 4 D 7 PHE A 185 ASN A 192 1 O VAL A 190 N MET A 120 SHEET 5 D 7 LEU A 267 PHE A 279 1 O ALA A 268 N PHE A 185 SHEET 6 D 7 PHE A 385 ARG A 392 -1 O ILE A 388 N PHE A 274 SHEET 7 D 7 ASP A 334 SER A 340 -1 N ASP A 334 O SER A 391 SHEET 1 E 3 ARG A 301 HIS A 303 0 SHEET 2 E 3 MET A 295 TYR A 298 -1 N CYS A 296 O HIS A 303 SHEET 3 E 3 ASP A 314 THR A 316 -1 O THR A 316 N MET A 295 SITE 1 AC1 19 TYR A 65 TYR A 72 THR A 91 PRO A 93 SITE 2 AC1 19 GLY A 123 VAL A 150 LEU A 152 ASN A 192 SITE 3 AC1 19 GLU A 193 MET A 198 PHE A 259 EDO A 503 SITE 4 AC1 19 HOH A 613 HOH A 618 HOH A 634 HOH A 640 SITE 5 AC1 19 HOH A 649 HOH A 679 HOH A 805 SITE 1 AC2 7 VAL A 203 GLU A 212 PHE A 230 GLU A 235 SITE 2 AC2 7 ARG A 238 THR A 252 HOH A 905 SITE 1 AC3 4 PHE A 122 VAL A 150 PHE A 259 SAH A 501 SITE 1 AC4 9 GLY A 74 GLY A 75 ARG A 343 ARG A 403 SITE 2 AC4 9 HOH A 740 HOH A 918 HOH A 928 HOH A 929 SITE 3 AC4 9 HOH A 931 SITE 1 AC5 6 GLY A 75 ALA A 76 ARG A 159 ARG A 403 SITE 2 AC5 6 HOH A 617 HOH A 930 CRYST1 45.630 74.550 111.790 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008945 0.00000