data_4G79 # _entry.id 4G79 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4G79 RCSB RCSB073826 WWPDB D_1000073826 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3PYI 'Structure of the N-terminal domain of C. elegans SAS-6' unspecified PDB 2Y3V 'Structure of the N-terminal domain of D. rerio SAS-6' unspecified PDB 2Y3W 'Structure of N-terminal domain and beginning of coiled coil of D. rerio SAS-6' unspecified PDB 3Q0Y 'Structure of N-terminal domain of C. reinhardtii SAS-6 homolog Bld12p' unspecified PDB 3Q0X 'Structure of N-terminal coiled coil dimer of C. reinhardtii SAS-6 homolog Bld12p' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4G79 _pdbx_database_status.recvd_initial_deposition_date 2012-07-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Erat, M.C.' 1 'Vakonakis, I.' 2 # _citation.id primary _citation.title 'Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 11373 _citation.page_last 11378 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23798409 _citation.pdbx_database_id_DOI 10.1073/pnas.1302721110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hilbert, M.' 1 primary 'Erat, M.C.' 2 primary 'Hachet, V.' 3 primary 'Guichard, P.' 4 primary 'Blank, I.D.' 5 primary 'Fluckiger, I.' 6 primary 'Slater, L.' 7 primary 'Lowe, E.D.' 8 primary 'Hatzopoulos, G.N.' 9 primary 'Steinmetz, M.O.' 10 primary 'Gonczy, P.' 11 primary 'Vakonakis, I.' 12 # _cell.entry_id 4G79 _cell.length_a 69.330 _cell.length_b 73.370 _cell.length_c 79.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G79 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spindle assembly abnormal protein 6' 16370.821 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILA RDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILA RDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 THR n 1 5 SER n 1 6 LYS n 1 7 ILE n 1 8 ALA n 1 9 LEU n 1 10 PHE n 1 11 ASP n 1 12 GLN n 1 13 THR n 1 14 LEU n 1 15 ILE n 1 16 ALA n 1 17 SER n 1 18 LEU n 1 19 LEU n 1 20 GLN n 1 21 PRO n 1 22 LEU n 1 23 SER n 1 24 LEU n 1 25 ASN n 1 26 GLN n 1 27 PRO n 1 28 ASP n 1 29 PHE n 1 30 LYS n 1 31 ALA n 1 32 TYR n 1 33 LYS n 1 34 THR n 1 35 LYS n 1 36 VAL n 1 37 LYS n 1 38 LEU n 1 39 LYS n 1 40 ILE n 1 41 SER n 1 42 GLU n 1 43 GLN n 1 44 ARG n 1 45 ASN n 1 46 GLU n 1 47 THR n 1 48 SER n 1 49 GLY n 1 50 GLU n 1 51 LYS n 1 52 GLU n 1 53 LEU n 1 54 LYS n 1 55 PHE n 1 56 GLU n 1 57 ILE n 1 58 SER n 1 59 ARG n 1 60 SER n 1 61 ASP n 1 62 ASP n 1 63 PHE n 1 64 GLU n 1 65 PHE n 1 66 LEU n 1 67 PHE n 1 68 SER n 1 69 GLU n 1 70 THR n 1 71 LEU n 1 72 ASN n 1 73 ASN n 1 74 GLU n 1 75 LYS n 1 76 TYR n 1 77 GLN n 1 78 ILE n 1 79 LEU n 1 80 ALA n 1 81 ARG n 1 82 ASP n 1 83 HIS n 1 84 ASP n 1 85 LEU n 1 86 THR n 1 87 VAL n 1 88 ASP n 1 89 PHE n 1 90 ASP n 1 91 ALA n 1 92 PHE n 1 93 PRO n 1 94 LYS n 1 95 VAL n 1 96 ILE n 1 97 ILE n 1 98 GLN n 1 99 HIS n 1 100 LEU n 1 101 LEU n 1 102 CYS n 1 103 LYS n 1 104 ASN n 1 105 THR n 1 106 GLU n 1 107 ILE n 1 108 ASN n 1 109 ILE n 1 110 ILE n 1 111 LEU n 1 112 ASP n 1 113 ALA n 1 114 GLU n 1 115 LYS n 1 116 ASN n 1 117 PHE n 1 118 CYS n 1 119 SER n 1 120 PHE n 1 121 GLU n 1 122 LEU n 1 123 PHE n 1 124 SER n 1 125 LYS n 1 126 THR n 1 127 PRO n 1 128 ILE n 1 129 SER n 1 130 LYS n 1 131 GLY n 1 132 LYS n 1 133 ILE n 1 134 PHE n 1 135 SER n 1 136 ILE n 1 137 LYS n 1 138 LEU n 1 139 HIS n 1 140 ALA n 1 141 VAL n 1 142 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 3 104 nematode ? 'sas-6, Y45F10D.9' ? ? ? ? ? ? 'Caenorhabditis elegans' 6239 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'modified pET15b' ? ? 1 2 sample ? 105 142 nematode ? 'sas-6, Y45F10D.9' ? ? ? ? ? ? 'Caenorhabditis elegans' 6239 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'modified pET15b' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SAS6_CAEEL O62479 1 ;MTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARD HDLTVDFDAFPKVIIQHLLCKN ; 1 ? 2 UNP SAS6_CAEEL O62479 1 TEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR 131 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4G79 A 3 ? 104 ? O62479 1 ? 102 ? 1 102 2 2 4G79 A 105 ? 142 ? O62479 131 ? 168 ? 103 140 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4G79 GLY A 1 ? UNP O62479 ? ? 'EXPRESSION TAG' -1 1 1 4G79 SER A 2 ? UNP O62479 ? ? 'EXPRESSION TAG' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G79 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_percent_sol 60.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1 M Sodium HEPES pH 7.5, 2.0 M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 PIXEL 'Pilatus 2M' 2011-08-05 'Crystal type: Si(111), toroidal mirrors' 2 CCD 'ADSC QUANTUM 315r' ? ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single bounce' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9163 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'DIAMOND BEAMLINE I04-1' Diamond I04-1 ? 0.9163 2 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? ? # _reflns.entry_id 4G79 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 29.15 _reflns.d_resolution_high 1.8 _reflns.number_obs 18784 _reflns.number_all 18784 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 32.05 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4G79 _refine.ls_number_reflns_obs 18781 _refine.ls_number_reflns_all 18781 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.93 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 98.28 _refine.ls_R_factor_obs 0.1977 _refine.ls_R_factor_all 0.1977 _refine.ls_R_factor_R_work 0.1971 _refine.ls_R_factor_R_free 0.2096 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.16 _refine.ls_number_reflns_R_free 970 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9467 _refine.correlation_coeff_Fo_to_Fc_free 0.9468 _refine.B_iso_mean 48.03 _refine.aniso_B[1][1] -9.5598 _refine.aniso_B[2][2] 9.0514 _refine.aniso_B[3][3] 0.5085 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.110 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4G79 _refine_analyze.Luzzati_coordinate_error_obs 0.286 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1092 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 1225 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 26.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.010 ? 2.00 1226 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.12 ? 2.00 1641 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 616 SINUSOIDAL 'X-RAY DIFFRACTION' t_incorr_chiral_ct ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 35 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 170 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 1226 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_omega_torsion 3.92 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 2.96 ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 166 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 1423 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2840 _refine_ls_shell.R_factor_R_work 0.2192 _refine_ls_shell.percent_reflns_obs 98.28 _refine_ls_shell.R_factor_R_free 0.2604 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.05 _refine_ls_shell.number_reflns_R_free 151 _refine_ls_shell.number_reflns_all 2991 _refine_ls_shell.R_factor_all 0.2212 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4G79 _struct.title 'Structure a C. elegans SAS-6 variant' _struct.pdbx_descriptor 'Spindle assembly abnormal protein 6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G79 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'structural protein, beta-sandwich, alpha-beta protein, cytoplasmic, centriolar, centriole, central tube' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 72 ? ASP A 84 ? ASN A 70 ASP A 82 1 ? 13 HELX_P HELX_P2 2 ALA A 91 ? LYS A 103 ? ALA A 89 LYS A 101 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 102 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 102 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 100 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 100 _struct_conn.ptnr2_symmetry 2_455 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.590 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 7 ? PRO A 21 ? ILE A 5 PRO A 19 A 2 PHE A 29 ? ARG A 44 ? PHE A 27 ARG A 42 A 3 LYS A 51 ? SER A 58 ? LYS A 49 SER A 56 A 4 LEU A 66 ? LEU A 71 ? LEU A 64 LEU A 69 A 5 LYS A 132 ? ALA A 140 ? LYS A 130 ALA A 138 A 6 PHE A 117 ? PHE A 123 ? PHE A 115 PHE A 121 A 7 GLU A 106 ? LEU A 111 ? GLU A 104 LEU A 109 A 8 ILE A 7 ? PRO A 21 ? ILE A 5 PRO A 19 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 18 ? N LEU A 16 O TYR A 32 ? O TYR A 30 A 2 3 N LYS A 37 ? N LYS A 35 O SER A 58 ? O SER A 56 A 3 4 N LEU A 53 ? N LEU A 51 O LEU A 71 ? O LEU A 69 A 4 5 N SER A 68 ? N SER A 66 O HIS A 139 ? O HIS A 137 A 5 6 O ILE A 133 ? O ILE A 131 N LEU A 122 ? N LEU A 120 A 6 7 O GLU A 121 ? O GLU A 119 N ASN A 108 ? N ASN A 106 A 7 8 O ILE A 107 ? O ILE A 105 N SER A 17 ? N SER A 15 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 202' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 203' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 204' AC5 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE PG4 A 205' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PG4 A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ALA A 8 ? ALA A 6 . ? 1_555 ? 2 AC1 2 LEU A 9 ? LEU A 7 . ? 1_555 ? 3 AC2 5 GLN A 98 ? GLN A 96 . ? 2_455 ? 4 AC2 5 LEU A 101 ? LEU A 99 . ? 1_555 ? 5 AC2 5 CYS A 102 ? CYS A 100 . ? 1_555 ? 6 AC2 5 LYS A 103 ? LYS A 101 . ? 1_555 ? 7 AC2 5 ASN A 104 ? ASN A 102 . ? 1_555 ? 8 AC3 4 GLU A 114 ? GLU A 112 . ? 1_555 ? 9 AC3 4 ASN A 116 ? ASN A 114 . ? 1_555 ? 10 AC3 4 ALA A 140 ? ALA A 138 . ? 1_555 ? 11 AC3 4 HOH H . ? HOH A 315 . ? 1_555 ? 12 AC4 5 SER A 17 ? SER A 15 . ? 1_555 ? 13 AC4 5 GLU A 106 ? GLU A 104 . ? 1_555 ? 14 AC4 5 ASN A 108 ? ASN A 106 . ? 1_555 ? 15 AC4 5 HOH H . ? HOH A 317 . ? 1_555 ? 16 AC4 5 HOH H . ? HOH A 331 . ? 1_555 ? 17 AC5 9 THR A 34 ? THR A 32 . ? 1_555 ? 18 AC5 9 LYS A 35 ? LYS A 33 . ? 1_555 ? 19 AC5 9 LYS A 37 ? LYS A 35 . ? 1_555 ? 20 AC5 9 SER A 58 ? SER A 56 . ? 1_555 ? 21 AC5 9 ARG A 59 ? ARG A 57 . ? 1_555 ? 22 AC5 9 SER A 60 ? SER A 58 . ? 1_555 ? 23 AC5 9 ASP A 61 ? ASP A 59 . ? 1_555 ? 24 AC5 9 PHE A 63 ? PHE A 61 . ? 1_555 ? 25 AC5 9 HOH H . ? HOH A 328 . ? 7_444 ? 26 AC6 5 ILE A 15 ? ILE A 13 . ? 1_555 ? 27 AC6 5 LYS A 33 ? LYS A 31 . ? 1_555 ? 28 AC6 5 ARG A 44 ? ARG A 42 . ? 7_444 ? 29 AC6 5 THR A 47 ? THR A 45 . ? 7_444 ? 30 AC6 5 THR A 105 ? THR A 103 . ? 1_555 ? # _database_PDB_matrix.entry_id 4G79 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4G79 _atom_sites.fract_transf_matrix[1][1] 0.014424 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013630 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012606 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 THR 4 2 2 THR THR A . n A 1 5 SER 5 3 3 SER SER A . n A 1 6 LYS 6 4 4 LYS LYS A . n A 1 7 ILE 7 5 5 ILE ILE A . n A 1 8 ALA 8 6 6 ALA ALA A . n A 1 9 LEU 9 7 7 LEU LEU A . n A 1 10 PHE 10 8 8 PHE PHE A . n A 1 11 ASP 11 9 9 ASP ASP A . n A 1 12 GLN 12 10 10 GLN GLN A . n A 1 13 THR 13 11 11 THR THR A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 ILE 15 13 13 ILE ILE A . n A 1 16 ALA 16 14 14 ALA ALA A . n A 1 17 SER 17 15 15 SER SER A . n A 1 18 LEU 18 16 16 LEU LEU A . n A 1 19 LEU 19 17 17 LEU LEU A . n A 1 20 GLN 20 18 18 GLN GLN A . n A 1 21 PRO 21 19 19 PRO PRO A . n A 1 22 LEU 22 20 20 LEU LEU A . n A 1 23 SER 23 21 ? ? ? A . n A 1 24 LEU 24 22 ? ? ? A . n A 1 25 ASN 25 23 ? ? ? A . n A 1 26 GLN 26 24 ? ? ? A . n A 1 27 PRO 27 25 25 PRO PRO A . n A 1 28 ASP 28 26 26 ASP ASP A . n A 1 29 PHE 29 27 27 PHE PHE A . n A 1 30 LYS 30 28 28 LYS LYS A . n A 1 31 ALA 31 29 29 ALA ALA A . n A 1 32 TYR 32 30 30 TYR TYR A . n A 1 33 LYS 33 31 31 LYS LYS A . n A 1 34 THR 34 32 32 THR THR A . n A 1 35 LYS 35 33 33 LYS LYS A . n A 1 36 VAL 36 34 34 VAL VAL A . n A 1 37 LYS 37 35 35 LYS LYS A . n A 1 38 LEU 38 36 36 LEU LEU A . n A 1 39 LYS 39 37 37 LYS LYS A . n A 1 40 ILE 40 38 38 ILE ILE A . n A 1 41 SER 41 39 39 SER SER A . n A 1 42 GLU 42 40 40 GLU GLU A . n A 1 43 GLN 43 41 41 GLN GLN A . n A 1 44 ARG 44 42 42 ARG ARG A . n A 1 45 ASN 45 43 43 ASN ASN A . n A 1 46 GLU 46 44 44 GLU GLU A . n A 1 47 THR 47 45 45 THR THR A . n A 1 48 SER 48 46 46 SER SER A . n A 1 49 GLY 49 47 47 GLY GLY A . n A 1 50 GLU 50 48 48 GLU GLU A . n A 1 51 LYS 51 49 49 LYS LYS A . n A 1 52 GLU 52 50 50 GLU GLU A . n A 1 53 LEU 53 51 51 LEU LEU A . n A 1 54 LYS 54 52 52 LYS LYS A . n A 1 55 PHE 55 53 53 PHE PHE A . n A 1 56 GLU 56 54 54 GLU GLU A . n A 1 57 ILE 57 55 55 ILE ILE A . n A 1 58 SER 58 56 56 SER SER A . n A 1 59 ARG 59 57 57 ARG ARG A . n A 1 60 SER 60 58 58 SER SER A . n A 1 61 ASP 61 59 59 ASP ASP A . n A 1 62 ASP 62 60 60 ASP ASP A . n A 1 63 PHE 63 61 61 PHE PHE A . n A 1 64 GLU 64 62 62 GLU GLU A . n A 1 65 PHE 65 63 63 PHE PHE A . n A 1 66 LEU 66 64 64 LEU LEU A . n A 1 67 PHE 67 65 65 PHE PHE A . n A 1 68 SER 68 66 66 SER SER A . n A 1 69 GLU 69 67 67 GLU GLU A . n A 1 70 THR 70 68 68 THR THR A . n A 1 71 LEU 71 69 69 LEU LEU A . n A 1 72 ASN 72 70 70 ASN ASN A . n A 1 73 ASN 73 71 71 ASN ASN A . n A 1 74 GLU 74 72 72 GLU GLU A . n A 1 75 LYS 75 73 73 LYS LYS A . n A 1 76 TYR 76 74 74 TYR TYR A . n A 1 77 GLN 77 75 75 GLN GLN A . n A 1 78 ILE 78 76 76 ILE ILE A . n A 1 79 LEU 79 77 77 LEU LEU A . n A 1 80 ALA 80 78 78 ALA ALA A . n A 1 81 ARG 81 79 79 ARG ARG A . n A 1 82 ASP 82 80 80 ASP ASP A . n A 1 83 HIS 83 81 81 HIS HIS A . n A 1 84 ASP 84 82 82 ASP ASP A . n A 1 85 LEU 85 83 83 LEU LEU A . n A 1 86 THR 86 84 84 THR THR A . n A 1 87 VAL 87 85 85 VAL VAL A . n A 1 88 ASP 88 86 86 ASP ASP A . n A 1 89 PHE 89 87 87 PHE PHE A . n A 1 90 ASP 90 88 88 ASP ASP A . n A 1 91 ALA 91 89 89 ALA ALA A . n A 1 92 PHE 92 90 90 PHE PHE A . n A 1 93 PRO 93 91 91 PRO PRO A . n A 1 94 LYS 94 92 92 LYS LYS A . n A 1 95 VAL 95 93 93 VAL VAL A . n A 1 96 ILE 96 94 94 ILE ILE A . n A 1 97 ILE 97 95 95 ILE ILE A . n A 1 98 GLN 98 96 96 GLN GLN A . n A 1 99 HIS 99 97 97 HIS HIS A . n A 1 100 LEU 100 98 98 LEU LEU A . n A 1 101 LEU 101 99 99 LEU LEU A . n A 1 102 CYS 102 100 100 CYS CYS A . n A 1 103 LYS 103 101 101 LYS LYS A . n A 1 104 ASN 104 102 102 ASN ASN A . n A 1 105 THR 105 103 103 THR THR A . n A 1 106 GLU 106 104 104 GLU GLU A . n A 1 107 ILE 107 105 105 ILE ILE A . n A 1 108 ASN 108 106 106 ASN ASN A . n A 1 109 ILE 109 107 107 ILE ILE A . n A 1 110 ILE 110 108 108 ILE ILE A . n A 1 111 LEU 111 109 109 LEU LEU A . n A 1 112 ASP 112 110 110 ASP ASP A . n A 1 113 ALA 113 111 111 ALA ALA A . n A 1 114 GLU 114 112 112 GLU GLU A . n A 1 115 LYS 115 113 113 LYS LYS A . n A 1 116 ASN 116 114 114 ASN ASN A . n A 1 117 PHE 117 115 115 PHE PHE A . n A 1 118 CYS 118 116 116 CYS CYS A . n A 1 119 SER 119 117 117 SER SER A . n A 1 120 PHE 120 118 118 PHE PHE A . n A 1 121 GLU 121 119 119 GLU GLU A . n A 1 122 LEU 122 120 120 LEU LEU A . n A 1 123 PHE 123 121 121 PHE PHE A . n A 1 124 SER 124 122 122 SER SER A . n A 1 125 LYS 125 123 123 LYS LYS A . n A 1 126 THR 126 124 124 THR THR A . n A 1 127 PRO 127 125 125 PRO PRO A . n A 1 128 ILE 128 126 126 ILE ILE A . n A 1 129 SER 129 127 127 SER SER A . n A 1 130 LYS 130 128 128 LYS LYS A . n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 LYS 132 130 130 LYS LYS A . n A 1 133 ILE 133 131 131 ILE ILE A . n A 1 134 PHE 134 132 132 PHE PHE A . n A 1 135 SER 135 133 133 SER SER A . n A 1 136 ILE 136 134 134 ILE ILE A . n A 1 137 LYS 137 135 135 LYS LYS A . n A 1 138 LEU 138 136 136 LEU LEU A . n A 1 139 HIS 139 137 137 HIS HIS A . n A 1 140 ALA 140 138 138 ALA ALA A . n A 1 141 VAL 141 139 139 VAL VAL A . n A 1 142 ARG 142 140 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 1 GOL GOL A . C 2 GOL 1 202 1 GOL GOL A . D 2 GOL 1 203 1 GOL GOL A . E 2 GOL 1 204 1 GOL GOL A . F 3 PG4 1 205 1 PG4 PG4 A . G 3 PG4 1 206 1 PG4 PG4 A . H 4 HOH 1 301 1 HOH HOH A . H 4 HOH 2 302 8 HOH HOH A . H 4 HOH 3 303 9 HOH HOH A . H 4 HOH 4 304 10 HOH HOH A . H 4 HOH 5 305 11 HOH HOH A . H 4 HOH 6 306 12 HOH HOH A . H 4 HOH 7 307 1 HOH HOH A . H 4 HOH 8 308 2 HOH HOH A . H 4 HOH 9 309 3 HOH HOH A . H 4 HOH 10 310 4 HOH HOH A . H 4 HOH 11 311 5 HOH HOH A . H 4 HOH 12 312 6 HOH HOH A . H 4 HOH 13 313 7 HOH HOH A . H 4 HOH 14 314 1 HOH HOH A . H 4 HOH 15 315 4 HOH HOH A . H 4 HOH 16 316 3 HOH HOH A . H 4 HOH 17 317 4 HOH HOH A . H 4 HOH 18 318 5 HOH HOH A . H 4 HOH 19 319 6 HOH HOH A . H 4 HOH 20 320 7 HOH HOH A . H 4 HOH 21 321 8 HOH HOH A . H 4 HOH 22 322 9 HOH HOH A . H 4 HOH 23 323 10 HOH HOH A . H 4 HOH 24 324 11 HOH HOH A . H 4 HOH 25 325 12 HOH HOH A . H 4 HOH 26 326 13 HOH HOH A . H 4 HOH 27 327 14 HOH HOH A . H 4 HOH 28 328 15 HOH HOH A . H 4 HOH 29 329 16 HOH HOH A . H 4 HOH 30 330 17 HOH HOH A . H 4 HOH 31 331 18 HOH HOH A . H 4 HOH 32 332 19 HOH HOH A . H 4 HOH 33 333 20 HOH HOH A . H 4 HOH 34 334 21 HOH HOH A . H 4 HOH 35 335 22 HOH HOH A . H 4 HOH 36 336 23 HOH HOH A . H 4 HOH 37 337 24 HOH HOH A . H 4 HOH 38 338 25 HOH HOH A . H 4 HOH 39 339 26 HOH HOH A . H 4 HOH 40 340 27 HOH HOH A . H 4 HOH 41 341 28 HOH HOH A . H 4 HOH 42 342 29 HOH HOH A . H 4 HOH 43 343 30 HOH HOH A . H 4 HOH 44 344 31 HOH HOH A . H 4 HOH 45 345 32 HOH HOH A . H 4 HOH 46 346 33 HOH HOH A . H 4 HOH 47 347 34 HOH HOH A . H 4 HOH 48 348 35 HOH HOH A . H 4 HOH 49 349 36 HOH HOH A . H 4 HOH 50 350 37 HOH HOH A . H 4 HOH 51 351 38 HOH HOH A . H 4 HOH 52 352 39 HOH HOH A . H 4 HOH 53 353 40 HOH HOH A . H 4 HOH 54 354 41 HOH HOH A . H 4 HOH 55 355 42 HOH HOH A . H 4 HOH 56 356 43 HOH HOH A . H 4 HOH 57 357 44 HOH HOH A . H 4 HOH 58 358 45 HOH HOH A . H 4 HOH 59 359 46 HOH HOH A . H 4 HOH 60 360 47 HOH HOH A . H 4 HOH 61 361 48 HOH HOH A . H 4 HOH 62 362 49 HOH HOH A . H 4 HOH 63 363 50 HOH HOH A . H 4 HOH 64 364 51 HOH HOH A . H 4 HOH 65 365 52 HOH HOH A . H 4 HOH 66 366 54 HOH HOH A . H 4 HOH 67 367 55 HOH HOH A . H 4 HOH 68 368 56 HOH HOH A . H 4 HOH 69 369 57 HOH HOH A . H 4 HOH 70 370 59 HOH HOH A . H 4 HOH 71 371 60 HOH HOH A . H 4 HOH 72 372 61 HOH HOH A . H 4 HOH 73 373 62 HOH HOH A . H 4 HOH 74 374 63 HOH HOH A . H 4 HOH 75 375 64 HOH HOH A . H 4 HOH 76 376 65 HOH HOH A . H 4 HOH 77 377 66 HOH HOH A . H 4 HOH 78 378 67 HOH HOH A . H 4 HOH 79 379 68 HOH HOH A . H 4 HOH 80 380 69 HOH HOH A . H 4 HOH 81 381 70 HOH HOH A . H 4 HOH 82 382 71 HOH HOH A . H 4 HOH 83 383 72 HOH HOH A . H 4 HOH 84 384 73 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3390 ? 1 MORE 1 ? 1 'SSA (A^2)' 16630 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_554 x,-y,-z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -79.3300000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-19 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2013-07-24 4 'Structure model' 1 3 2017-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -16.8468 _pdbx_refine_tls.origin_y -2.7927 _pdbx_refine_tls.origin_z -23.3915 _pdbx_refine_tls.T[1][1] -0.3199 _pdbx_refine_tls.T[2][2] -0.4718 _pdbx_refine_tls.T[3][3] -0.4026 _pdbx_refine_tls.T[1][2] 0.0055 _pdbx_refine_tls.T[1][3] -0.0926 _pdbx_refine_tls.T[2][3] 0.0062 _pdbx_refine_tls.L[1][1] 0.5608 _pdbx_refine_tls.L[2][2] 3.9262 _pdbx_refine_tls.L[3][3] 3.9031 _pdbx_refine_tls.L[1][2] -0.2783 _pdbx_refine_tls.L[1][3] 0.7101 _pdbx_refine_tls.L[2][3] 0.1382 _pdbx_refine_tls.S[1][1] 0.0168 _pdbx_refine_tls.S[2][2] -0.0231 _pdbx_refine_tls.S[3][3] 0.0062 _pdbx_refine_tls.S[1][2] 0.0717 _pdbx_refine_tls.S[1][3] -0.0337 _pdbx_refine_tls.S[2][3] -0.3898 _pdbx_refine_tls.S[2][1] 0.4032 _pdbx_refine_tls.S[3][1] 0.0039 _pdbx_refine_tls.S[3][2] 0.1320 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 20 '{ A|2 - A|20 A|25 - A|139 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 25 A 139 '{ A|2 - A|20 A|25 - A|139 }' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GNDclient 'data collection' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.10.0 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id PG4 _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 206 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id G _pdbx_unobs_or_zero_occ_atoms.label_comp_id PG4 _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A SER 21 ? A SER 23 5 1 Y 1 A LEU 22 ? A LEU 24 6 1 Y 1 A ASN 23 ? A ASN 25 7 1 Y 1 A GLN 24 ? A GLN 26 8 1 Y 1 A ARG 140 ? A ARG 142 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'TETRAETHYLENE GLYCOL' PG4 4 water HOH #