HEADER SIGNALING PROTEIN 25-JUL-12 4GAI TITLE CRYSTAL STRUCTURE OF EBI-005, A CHIMERA OF HUMAN IL-1BETA AND IL-1RA CAVEAT 4GAI CHIRALITY DEVIATION FOR THE FOLLOWING RESIDUE OF CHAIN A: CAVEAT 2 4GAI THR 134 CB COMPND MOL_ID: 1; COMPND 2 MOLECULE: EBI-005; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IL-1BETA, IL-1RA, IL-1R1, IL-1 SIGNALING, BETA-TREFOIL, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HOU,S.A.TOWNSON,J.T.KOVALCHIN,A.MASCI,O.KINER,Y.SHU,B.KING, AUTHOR 2 C.THOMAS,K.C.GARCIA,E.S.FURFINE,T.M.BARNES REVDAT 4 28-FEB-24 4GAI 1 REMARK REVDAT 3 15-NOV-17 4GAI 1 REMARK REVDAT 2 27-MAR-13 4GAI 1 JRNL REVDAT 1 20-FEB-13 4GAI 0 JRNL AUTH J.HOU,S.A.TOWNSON,J.T.KOVALCHIN,A.MASCI,O.KINER,Y.SHU, JRNL AUTH 2 B.M.KING,E.SCHIRMER,K.GOLDEN,C.THOMAS,K.C.GARCIA, JRNL AUTH 3 G.ZARBIS-PAPASTOITSIS,E.S.FURFINE,T.M.BARNES JRNL TITL DESIGN OF A SUPERIOR CYTOKINE ANTAGONIST FOR TOPICAL JRNL TITL 2 OPHTHALMIC USE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 3913 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23431173 JRNL DOI 10.1073/PNAS.1217996110 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 51814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2385 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2557 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3478 ; 1.342 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;34.947 ;25.968 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;14.029 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.258 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1936 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 1.211 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2510 ; 1.990 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 3.055 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 951 ; 4.928 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 152 REMARK 3 RESIDUE RANGE : A 201 A 412 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1400 -16.7340 -11.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0079 REMARK 3 T33: 0.0264 T12: 0.0097 REMARK 3 T13: 0.0083 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.1284 L22: 1.7273 REMARK 3 L33: 2.6645 L12: -0.4005 REMARK 3 L13: 0.1743 L23: 0.1704 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.0032 S13: -0.0071 REMARK 3 S21: -0.0856 S22: -0.0203 S23: 0.0262 REMARK 3 S31: 0.0239 S32: -0.0597 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 151 REMARK 3 RESIDUE RANGE : B 201 B 342 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7990 -16.3960 -39.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.0786 REMARK 3 T33: 0.0407 T12: 0.0237 REMARK 3 T13: 0.0204 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.5142 L22: 1.7936 REMARK 3 L33: 3.7067 L12: -0.6178 REMARK 3 L13: 0.7278 L23: 0.0542 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.2829 S13: 0.0327 REMARK 3 S21: -0.2010 S22: -0.0667 S23: 0.0136 REMARK 3 S31: -0.0115 S32: 0.1585 S33: 0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4GAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 200 MM MGCL2, 100 MM REMARK 280 HEPES, PH 7.5, 0.5% W/V N-DODECY- -D-MALTOSIDE (DDM), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.13300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.13300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.69600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.69600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.13300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.69600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.45500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.13300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.69600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.45500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 153 REMARK 465 GLY B 48 REMARK 465 GLU B 49 REMARK 465 GLU B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 ASP B 53 REMARK 465 LYS B 54 REMARK 465 ASP B 138 REMARK 465 GLU B 139 REMARK 465 GLY B 140 REMARK 465 VAL B 141 REMARK 465 SER B 152 REMARK 465 SER B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 228 O HOH A 406 1.94 REMARK 500 O HOH A 388 O HOH A 398 2.03 REMARK 500 O HOH B 325 O HOH B 336 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 94 CG MET A 94 SD -0.175 REMARK 500 GLU A 95 CG GLU A 95 CD 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 43.57 36.50 REMARK 500 ASN B 107 -2.50 77.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GAF RELATED DB: PDB DBREF 4GAI A 1 153 PDB 4GAI 4GAI 1 153 DBREF 4GAI B 1 153 PDB 4GAI 4GAI 1 153 SEQRES 1 A 153 ALA PRO VAL ARG SER LEU ASN CYS ARG ILE TRP ASP VAL SEQRES 2 A 153 ASN GLN LYS THR PHE TYR LEU ARG ASN ASN GLN LEU VAL SEQRES 3 A 153 ALA GLY TYR LEU GLN GLY PRO ASN VAL ASN LEU GLU GLU SEQRES 4 A 153 LYS PHE SER MET SER PHE VAL GLN GLY GLU GLU SER ASN SEQRES 5 A 153 ASP LYS ILE PRO VAL ALA LEU GLY LEU LYS GLU LYS ASN SEQRES 6 A 153 LEU TYR LEU SER CYS VAL LEU LYS ASP ASP LYS PRO THR SEQRES 7 A 153 LEU GLN LEU GLU SER VAL ASP PRO LYS ASN TYR PRO LYS SEQRES 8 A 153 LYS LYS MET GLU LYS ARG PHE VAL PHE ASN LYS ILE GLU SEQRES 9 A 153 ILE ASN ASN LYS LEU GLU PHE GLU SER ALA GLN PHE PRO SEQRES 10 A 153 ASN TRP PHE LEU CYS THR ALA MET GLU ALA ASP GLN PRO SEQRES 11 A 153 VAL SER LEU THR ASN MET PRO ASP GLU GLY VAL MET VAL SEQRES 12 A 153 THR LYS PHE TYR MET GLN PHE VAL SER SER SEQRES 1 B 153 ALA PRO VAL ARG SER LEU ASN CYS ARG ILE TRP ASP VAL SEQRES 2 B 153 ASN GLN LYS THR PHE TYR LEU ARG ASN ASN GLN LEU VAL SEQRES 3 B 153 ALA GLY TYR LEU GLN GLY PRO ASN VAL ASN LEU GLU GLU SEQRES 4 B 153 LYS PHE SER MET SER PHE VAL GLN GLY GLU GLU SER ASN SEQRES 5 B 153 ASP LYS ILE PRO VAL ALA LEU GLY LEU LYS GLU LYS ASN SEQRES 6 B 153 LEU TYR LEU SER CYS VAL LEU LYS ASP ASP LYS PRO THR SEQRES 7 B 153 LEU GLN LEU GLU SER VAL ASP PRO LYS ASN TYR PRO LYS SEQRES 8 B 153 LYS LYS MET GLU LYS ARG PHE VAL PHE ASN LYS ILE GLU SEQRES 9 B 153 ILE ASN ASN LYS LEU GLU PHE GLU SER ALA GLN PHE PRO SEQRES 10 B 153 ASN TRP PHE LEU CYS THR ALA MET GLU ALA ASP GLN PRO SEQRES 11 B 153 VAL SER LEU THR ASN MET PRO ASP GLU GLY VAL MET VAL SEQRES 12 B 153 THR LYS PHE TYR MET GLN PHE VAL SER SER FORMUL 3 HOH *354(H2 O) HELIX 1 1 GLN A 31 GLU A 38 5 8 HELIX 2 2 GLU A 95 PHE A 98 5 4 HELIX 3 3 GLN B 31 GLU B 38 5 8 HELIX 4 4 GLU B 95 ARG B 97 5 3 SHEET 1 A 7 SER A 5 ASP A 12 0 SHEET 2 A 7 PHE A 41 PHE A 45 -1 O PHE A 41 N CYS A 8 SHEET 3 A 7 ILE A 55 LEU A 61 -1 O GLY A 60 N SER A 42 SHEET 4 A 7 PHE A 100 ILE A 105 -1 O PHE A 100 N VAL A 57 SHEET 5 A 7 LYS A 108 SER A 113 -1 O GLU A 112 N ASN A 101 SHEET 6 A 7 PHE A 146 PHE A 150 -1 O PHE A 146 N LEU A 109 SHEET 7 A 7 SER A 5 ASP A 12 -1 N TRP A 11 O TYR A 147 SHEET 1 B 3 THR A 17 ARG A 21 0 SHEET 2 B 3 GLN A 24 GLY A 28 -1 O GLN A 24 N ARG A 21 SHEET 3 B 3 GLN A 129 PRO A 130 -1 O GLN A 129 N ALA A 27 SHEET 1 C 2 LEU A 66 LYS A 73 0 SHEET 2 C 2 LYS A 76 SER A 83 -1 O GLU A 82 N TYR A 67 SHEET 1 D 2 PHE A 120 CYS A 122 0 SHEET 2 D 2 SER A 132 THR A 134 -1 O SER A 132 N CYS A 122 SHEET 1 E 7 ARG B 4 ASP B 12 0 SHEET 2 E 7 PHE B 41 PHE B 45 -1 O MET B 43 N LEU B 6 SHEET 3 E 7 PRO B 56 LEU B 61 -1 O GLY B 60 N SER B 42 SHEET 4 E 7 VAL B 99 ILE B 105 -1 O PHE B 100 N VAL B 57 SHEET 5 E 7 LYS B 108 SER B 113 -1 O GLU B 112 N ASN B 101 SHEET 6 E 7 PHE B 146 PHE B 150 -1 O PHE B 146 N LEU B 109 SHEET 7 E 7 ARG B 4 ASP B 12 -1 N TRP B 11 O TYR B 147 SHEET 1 F 3 THR B 17 ARG B 21 0 SHEET 2 F 3 GLN B 24 GLY B 28 -1 O VAL B 26 N TYR B 19 SHEET 3 F 3 GLN B 129 PRO B 130 -1 O GLN B 129 N ALA B 27 SHEET 1 G 2 LEU B 66 LYS B 73 0 SHEET 2 G 2 LYS B 76 SER B 83 -1 O THR B 78 N VAL B 71 SHEET 1 H 2 PHE B 120 CYS B 122 0 SHEET 2 H 2 SER B 132 THR B 134 -1 O THR B 134 N PHE B 120 CISPEP 1 TYR A 89 PRO A 90 0 -2.99 CISPEP 2 TYR B 89 PRO B 90 0 -1.78 CRYST1 43.392 66.910 216.266 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004624 0.00000