HEADER OXIDOREDUCTASE 26-JUL-12 4GAZ TITLE CRYSTAL STRUCTURE OF A JUMONJI DOMAIN-CONTAINING PROTEIN JMJD5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: JMJC DOMAIN, UNP RESIDUES 176-416; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING PROTEIN 5, JUMONJI DOMAIN-CONTAINING COMPND 6 PROTEIN 5; COMPND 7 EC: 1.14.11.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JMJD5, KDM8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS JMJC DOMAIN, DEMETHYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,X.ZHOU,X.ZHANG,Y.TAO,N.CHEN,J.ZANG REVDAT 1 14-AUG-13 4GAZ 0 JRNL AUTH H.WANG,X.ZHOU,X.ZHANG,Y.TAO,N.CHEN,J.ZANG JRNL TITL CRYSTAL STRUCTURE OF A JUMONJI DOMAIN-CONTAINING PROTEIN JRNL TITL 2 JMJD5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 17495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1848 - 5.0957 0.86 2834 131 0.2277 0.2545 REMARK 3 2 5.0957 - 4.0458 0.88 2722 141 0.1829 0.2252 REMARK 3 3 4.0458 - 3.5347 0.96 2889 173 0.2092 0.2762 REMARK 3 4 3.5347 - 3.2117 0.93 2810 162 0.2305 0.3270 REMARK 3 5 3.2117 - 2.9816 0.91 2729 160 0.2502 0.3174 REMARK 3 6 2.9816 - 2.8058 0.87 2604 140 0.2767 0.3034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 60.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.56110 REMARK 3 B22 (A**2) : 15.56110 REMARK 3 B33 (A**2) : -31.12230 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3997 REMARK 3 ANGLE : 1.187 5442 REMARK 3 CHIRALITY : 0.080 570 REMARK 3 PLANARITY : 0.006 706 REMARK 3 DIHEDRAL : 18.959 1466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB073958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.806 REMARK 200 RESOLUTION RANGE LOW (A) : 40.181 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (PHENIX.AUTOSOL) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 9% PEG 3350 (W/V), PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 180.03467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.01733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.01733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 180.03467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 ASP A 353 REMARK 465 THR A 354 REMARK 465 HIS A 355 REMARK 465 LEU A 356 REMARK 465 LEU A 357 REMARK 465 HIS A 358 REMARK 465 LEU A 417 REMARK 465 GLU A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 MET B 173 REMARK 465 GLY B 174 REMARK 465 SER B 175 REMARK 465 ASP B 353 REMARK 465 THR B 354 REMARK 465 HIS B 355 REMARK 465 LEU B 356 REMARK 465 LEU B 357 REMARK 465 HIS B 358 REMARK 465 LEU B 417 REMARK 465 GLU B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 268 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 238 NH1 ARG A 242 1.75 REMARK 500 OE1 GLU B 228 O HOH B 1004 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 199 -67.28 -140.21 REMARK 500 TRP A 221 73.77 -111.14 REMARK 500 ARG A 242 41.15 -91.46 REMARK 500 ILE A 263 -55.29 -136.48 REMARK 500 ASN A 265 -128.88 52.39 REMARK 500 ARG A 268 -76.39 -74.80 REMARK 500 GLN A 344 29.61 -67.44 REMARK 500 TYR A 350 69.10 61.77 REMARK 500 ASN A 367 58.46 -168.05 REMARK 500 VAL A 396 132.52 -39.50 REMARK 500 ARG B 189 69.82 24.42 REMARK 500 PHE B 199 -52.82 -143.23 REMARK 500 ARG B 242 31.67 -88.15 REMARK 500 ILE B 263 -52.66 -121.63 REMARK 500 ASN B 265 -125.24 62.85 REMARK 500 GLN B 344 44.08 -71.22 REMARK 500 TYR B 350 64.16 61.00 REMARK 500 PRO B 351 150.42 -49.80 REMARK 500 ASN B 367 60.83 -159.00 REMARK 500 LYS B 375 -6.70 -56.85 REMARK 500 ALA B 377 -14.49 -49.59 REMARK 500 LYS B 397 -0.82 64.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OGA A 502 O1 REMARK 620 2 OGA A 502 O2' 74.9 REMARK 620 3 HIS A 321 NE2 146.7 86.5 REMARK 620 4 ASP A 323 OD2 72.6 146.0 116.1 REMARK 620 5 HIS A 400 NE2 77.1 84.4 73.7 78.8 REMARK 620 6 ASP A 323 OD1 119.8 165.1 81.7 48.8 100.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OGA B 502 O2' REMARK 620 2 HIS B 321 NE2 90.9 REMARK 620 3 OGA B 502 O1 74.5 149.0 REMARK 620 4 ASP B 323 OD2 149.5 107.1 77.7 REMARK 620 5 HIS B 400 NE2 83.6 74.3 77.0 78.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UYJ RELATED DB: PDB REMARK 900 RELATED ID: 4AAP RELATED DB: PDB DBREF 4GAZ A 176 416 UNP Q8N371 KDM8_HUMAN 176 416 DBREF 4GAZ B 176 416 UNP Q8N371 KDM8_HUMAN 176 416 SEQADV 4GAZ MET A 173 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ GLY A 174 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ SER A 175 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ LEU A 417 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ GLU A 418 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS A 419 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS A 420 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS A 421 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS A 422 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS A 423 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS A 424 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ MET B 173 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ GLY B 174 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ SER B 175 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ LEU B 417 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ GLU B 418 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS B 419 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS B 420 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS B 421 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS B 422 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS B 423 UNP Q8N371 EXPRESSION TAG SEQADV 4GAZ HIS B 424 UNP Q8N371 EXPRESSION TAG SEQRES 1 A 252 MET GLY SER PRO ASP VAL LYS LEU GLU LYS THR VAL PRO SEQRES 2 A 252 ARG LEU HIS ARG PRO SER LEU GLN HIS PHE ARG GLU GLN SEQRES 3 A 252 PHE LEU VAL PRO GLY ARG PRO VAL ILE LEU LYS GLY VAL SEQRES 4 A 252 ALA ASP HIS TRP PRO CYS MET GLN LYS TRP SER LEU GLU SEQRES 5 A 252 TYR ILE GLN GLU ILE ALA GLY CYS ARG THR VAL PRO VAL SEQRES 6 A 252 GLU VAL GLY SER ARG TYR THR ASP GLU GLU TRP SER GLN SEQRES 7 A 252 THR LEU MET THR VAL ASN GLU PHE ILE SER LYS TYR ILE SEQRES 8 A 252 VAL ASN GLU PRO ARG ASP VAL GLY TYR LEU ALA GLN HIS SEQRES 9 A 252 GLN LEU PHE ASP GLN ILE PRO GLU LEU LYS GLN ASP ILE SEQRES 10 A 252 SER ILE PRO ASP TYR CYS SER LEU GLY ASP GLY GLU GLU SEQRES 11 A 252 GLU GLU ILE THR ILE ASN ALA TRP PHE GLY PRO GLN GLY SEQRES 12 A 252 THR ILE SER PRO LEU HIS GLN ASP PRO GLN GLN ASN PHE SEQRES 13 A 252 LEU VAL GLN VAL MET GLY ARG LYS TYR ILE ARG LEU TYR SEQRES 14 A 252 SER PRO GLN GLU SER GLY ALA LEU TYR PRO HIS ASP THR SEQRES 15 A 252 HIS LEU LEU HIS ASN THR SER GLN VAL ASP VAL GLU ASN SEQRES 16 A 252 PRO ASP LEU GLU LYS PHE PRO LYS PHE ALA LYS ALA PRO SEQRES 17 A 252 PHE LEU SER CYS ILE LEU SER PRO GLY GLU ILE LEU PHE SEQRES 18 A 252 ILE PRO VAL LYS TYR TRP HIS TYR VAL ARG ALA LEU ASP SEQRES 19 A 252 LEU SER PHE SER VAL SER PHE TRP TRP SER LEU GLU HIS SEQRES 20 A 252 HIS HIS HIS HIS HIS SEQRES 1 B 252 MET GLY SER PRO ASP VAL LYS LEU GLU LYS THR VAL PRO SEQRES 2 B 252 ARG LEU HIS ARG PRO SER LEU GLN HIS PHE ARG GLU GLN SEQRES 3 B 252 PHE LEU VAL PRO GLY ARG PRO VAL ILE LEU LYS GLY VAL SEQRES 4 B 252 ALA ASP HIS TRP PRO CYS MET GLN LYS TRP SER LEU GLU SEQRES 5 B 252 TYR ILE GLN GLU ILE ALA GLY CYS ARG THR VAL PRO VAL SEQRES 6 B 252 GLU VAL GLY SER ARG TYR THR ASP GLU GLU TRP SER GLN SEQRES 7 B 252 THR LEU MET THR VAL ASN GLU PHE ILE SER LYS TYR ILE SEQRES 8 B 252 VAL ASN GLU PRO ARG ASP VAL GLY TYR LEU ALA GLN HIS SEQRES 9 B 252 GLN LEU PHE ASP GLN ILE PRO GLU LEU LYS GLN ASP ILE SEQRES 10 B 252 SER ILE PRO ASP TYR CYS SER LEU GLY ASP GLY GLU GLU SEQRES 11 B 252 GLU GLU ILE THR ILE ASN ALA TRP PHE GLY PRO GLN GLY SEQRES 12 B 252 THR ILE SER PRO LEU HIS GLN ASP PRO GLN GLN ASN PHE SEQRES 13 B 252 LEU VAL GLN VAL MET GLY ARG LYS TYR ILE ARG LEU TYR SEQRES 14 B 252 SER PRO GLN GLU SER GLY ALA LEU TYR PRO HIS ASP THR SEQRES 15 B 252 HIS LEU LEU HIS ASN THR SER GLN VAL ASP VAL GLU ASN SEQRES 16 B 252 PRO ASP LEU GLU LYS PHE PRO LYS PHE ALA LYS ALA PRO SEQRES 17 B 252 PHE LEU SER CYS ILE LEU SER PRO GLY GLU ILE LEU PHE SEQRES 18 B 252 ILE PRO VAL LYS TYR TRP HIS TYR VAL ARG ALA LEU ASP SEQRES 19 B 252 LEU SER PHE SER VAL SER PHE TRP TRP SER LEU GLU HIS SEQRES 20 B 252 HIS HIS HIS HIS HIS HET NI A 501 1 HET OGA A 502 10 HET NI B 501 1 HET OGA B 502 10 HETNAM NI NICKEL (II) ION HETNAM OGA N-OXALYLGLYCINE FORMUL 3 NI 2(NI 2+) FORMUL 4 OGA 2(C4 H5 N O5) FORMUL 7 HOH *17(H2 O) HELIX 1 1 SER A 191 PHE A 199 1 9 HELIX 2 2 PRO A 216 TRP A 221 1 6 HELIX 3 3 SER A 222 GLY A 231 1 10 HELIX 4 4 THR A 244 TRP A 248 5 5 HELIX 5 5 VAL A 255 ILE A 263 1 9 HELIX 6 6 GLN A 277 ILE A 282 1 6 HELIX 7 7 GLU A 284 ILE A 289 5 6 HELIX 8 8 PRO A 292 GLY A 298 5 7 HELIX 9 9 GLU A 301 ILE A 305 5 5 HELIX 10 10 SER A 342 TYR A 350 5 9 HELIX 11 11 PHE A 373 ALA A 377 5 5 HELIX 12 12 SER B 191 PHE B 199 1 9 HELIX 13 13 TRP B 215 TRP B 221 1 7 HELIX 14 14 SER B 222 ALA B 230 1 9 HELIX 15 15 THR B 244 TRP B 248 5 5 HELIX 16 16 VAL B 255 ILE B 263 1 9 HELIX 17 17 GLN B 277 ILE B 282 1 6 HELIX 18 18 PRO B 292 LEU B 297 5 6 HELIX 19 19 GLU B 301 ILE B 305 5 5 HELIX 20 20 SER B 342 TYR B 350 5 9 SHEET 1 A 7 ARG A 186 HIS A 188 0 SHEET 2 A 7 VAL A 206 LYS A 209 1 O ILE A 207 N LEU A 187 SHEET 3 A 7 ILE A 391 ILE A 394 -1 O ILE A 391 N LEU A 208 SHEET 4 A 7 GLN A 326 MET A 333 -1 N LEU A 329 O LEU A 392 SHEET 5 A 7 SER A 408 TRP A 415 -1 O VAL A 411 N VAL A 330 SHEET 6 A 7 THR A 306 GLY A 312 -1 N TRP A 310 O SER A 410 SHEET 7 A 7 LEU A 273 HIS A 276 -1 N LEU A 273 O PHE A 311 SHEET 1 B 2 THR A 234 VAL A 239 0 SHEET 2 B 2 SER A 249 THR A 254 -1 O MET A 253 N VAL A 235 SHEET 1 C 4 ILE A 317 HIS A 321 0 SHEET 2 C 4 TRP A 399 ALA A 404 -1 O VAL A 402 N SER A 318 SHEET 3 C 4 LYS A 336 TYR A 341 -1 N TYR A 337 O ARG A 403 SHEET 4 C 4 LEU A 382 LEU A 386 -1 O LEU A 382 N LEU A 340 SHEET 1 D 9 ARG B 186 HIS B 188 0 SHEET 2 D 9 VAL B 206 LYS B 209 1 O LYS B 209 N LEU B 187 SHEET 3 D 9 ILE B 391 ILE B 394 -1 O PHE B 393 N VAL B 206 SHEET 4 D 9 GLN B 326 MET B 333 -1 N LEU B 329 O LEU B 392 SHEET 5 D 9 SER B 408 TRP B 415 -1 O VAL B 411 N VAL B 330 SHEET 6 D 9 THR B 306 GLY B 312 -1 N GLY B 312 O SER B 408 SHEET 7 D 9 GLY B 271 HIS B 276 -1 N HIS B 276 O ALA B 309 SHEET 8 D 9 THR B 234 VAL B 239 -1 N GLU B 238 O TYR B 272 SHEET 9 D 9 SER B 249 THR B 254 -1 O MET B 253 N VAL B 235 SHEET 1 E 4 ILE B 317 HIS B 321 0 SHEET 2 E 4 TRP B 399 ALA B 404 -1 O VAL B 402 N SER B 318 SHEET 3 E 4 LYS B 336 TYR B 341 -1 N TYR B 337 O ARG B 403 SHEET 4 E 4 LEU B 382 LEU B 386 -1 O LEU B 382 N LEU B 340 SSBOND 1 CYS A 232 CYS B 232 1555 5445 1.98 LINK NI NI A 501 O1 OGA A 502 1555 1555 2.22 LINK NI NI B 501 O2' OGA B 502 1555 1555 2.25 LINK NI NI A 501 O2' OGA A 502 1555 1555 2.29 LINK NE2 HIS A 321 NI NI A 501 1555 1555 2.30 LINK NE2 HIS B 321 NI NI B 501 1555 1555 2.32 LINK NI NI B 501 O1 OGA B 502 1555 1555 2.44 LINK OD2 ASP B 323 NI NI B 501 1555 1555 2.46 LINK OD2 ASP A 323 NI NI A 501 1555 1555 2.55 LINK NE2 HIS B 400 NI NI B 501 1555 1555 2.66 LINK NE2 HIS A 400 NI NI A 501 1555 1555 2.68 LINK OD1 ASP A 323 NI NI A 501 1555 1555 2.76 SITE 1 AC1 4 HIS A 321 ASP A 323 HIS A 400 OGA A 502 SITE 1 AC2 10 TYR A 272 TRP A 310 SER A 318 HIS A 321 SITE 2 AC2 10 ASP A 323 ASN A 327 LYS A 336 HIS A 400 SITE 3 AC2 10 VAL A 402 NI A 501 SITE 1 AC3 4 HIS B 321 ASP B 323 HIS B 400 OGA B 502 SITE 1 AC4 13 TYR B 272 TRP B 310 SER B 318 HIS B 321 SITE 2 AC4 13 ASP B 323 ASN B 327 LEU B 329 LYS B 336 SITE 3 AC4 13 HIS B 400 VAL B 402 SER B 412 TRP B 414 SITE 4 AC4 13 NI B 501 CRYST1 69.431 69.431 270.052 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014403 0.008315 0.000000 0.00000 SCALE2 0.000000 0.016631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003703 0.00000