HEADER HYDROLASE 28-JUL-12 4GBW TITLE CRYSTAL STRUCTURE OF AMP COMPLEXES OF PORCINE LIVER FRUCTOSE-1,6- TITLE 2 BISPHOSPHATASE MUTANT A54L WITH 1,2-PROPANEDIOL AS CRYO-PROTECTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-1,6-BISPHOSPHATASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBPASE 1, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 1; COMPND 5 EC: 3.1.3.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIGS,SWINE,WILD BOAR; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: FBP, FBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DF657; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS ALLOSTERIC ENZYMES, FBPASE, AMP, 1, 2-PROPANEDIOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.B.HONZATKO,Y.GAO REVDAT 3 28-FEB-24 4GBW 1 HETSYN REVDAT 2 29-JUL-20 4GBW 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 21-AUG-13 4GBW 0 JRNL AUTH R.B.HONZATKO,Y.GAO,N.D.GINDER JRNL TITL WATER STRUCTURE OF THE CENTRAL HYDROPHOBIC CAVITY OF JRNL TITL 2 MAMMALIAN FRUCTOSE-1,6-BISPHOSPHATASE: A POTENTIAL JRNL TITL 3 THERMODYNAMIC DETERMINANT OF ALLOWED QUATERNARY STATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 3 NUMBER OF REFLECTIONS : 20837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.629 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2579 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3498 ; 1.992 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;37.600 ;24.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;16.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1875 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 1.138 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2615 ; 1.902 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 961 ; 3.098 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 4.401 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4GBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.7L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.7L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.8 REMARK 200 DATA REDUNDANCY : 3.580 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.89 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, T-BUTYL ALCOHOL, 1,2 REMARK 280 -PROPANEDIOL, PH 7.5, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.69050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.35900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.58250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.69050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.35900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.58250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.69050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.35900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.58250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.69050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.35900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.58250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.38100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 82.71800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 53.38100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 82.71800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PHE A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 199 O HOH A 695 1.72 REMARK 500 NH2 ARG A 157 O HOH A 689 1.74 REMARK 500 O HOH A 594 O HOH A 690 1.87 REMARK 500 O ILE A 10 O HOH A 583 1.94 REMARK 500 NZ LYS A 204 O HOH A 617 2.06 REMARK 500 NH2 ARG A 140 O3' AMP A 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 614 O HOH A 614 2665 1.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 19 9.49 -67.71 REMARK 500 ALA A 24 -2.14 -49.68 REMARK 500 CYS A 92 -30.45 -134.80 REMARK 500 ASN A 142 -61.23 -107.95 REMARK 500 SER A 143 165.86 -47.43 REMARK 500 ASP A 145 157.68 -34.26 REMARK 500 SER A 207 34.05 -152.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD2 REMARK 620 2 PO4 A 405 O2 80.3 REMARK 620 3 PO4 A 405 O1 141.7 61.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE1 REMARK 620 2 ASP A 118 OD2 101.1 REMARK 620 3 LEU A 120 O 168.4 88.4 REMARK 620 4 PO4 A 405 O1 82.5 148.4 93.0 REMARK 620 5 PO4 A 405 O3 76.1 91.0 110.7 59.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD1 REMARK 620 2 ASP A 121 OD1 122.6 REMARK 620 3 GLU A 280 OE1 85.1 126.2 REMARK 620 4 PO4 A 405 O3 74.6 145.2 82.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YXI RELATED DB: PDB REMARK 900 RELATED ID: 1YYZ RELATED DB: PDB REMARK 900 RELATED ID: 1YZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4GBV RELATED DB: PDB DBREF 4GBW A 1 335 UNP P00636 F16P1_PIG 2 336 SEQADV 4GBW LEU A 54 UNP P00636 ALA 55 ENGINEERED MUTATION SEQRES 1 A 335 THR ASP GLN ALA ALA PHE ASP THR ASN ILE VAL THR LEU SEQRES 2 A 335 THR ARG PHE VAL MET GLU GLU GLY ARG LYS ALA ARG GLY SEQRES 3 A 335 THR GLY GLU MET THR GLN LEU LEU ASN SER LEU CYS THR SEQRES 4 A 335 ALA VAL LYS ALA ILE SER THR ALA VAL ARG LYS ALA GLY SEQRES 5 A 335 ILE LEU HIS LEU TYR GLY ILE ALA GLY SER THR ASN VAL SEQRES 6 A 335 THR GLY ASP GLN VAL LYS LYS LEU ASP VAL LEU SER ASN SEQRES 7 A 335 ASP LEU VAL ILE ASN VAL LEU LYS SER SER PHE ALA THR SEQRES 8 A 335 CYS VAL LEU VAL SER GLU GLU ASP LYS ASN ALA ILE ILE SEQRES 9 A 335 VAL GLU PRO GLU LYS ARG GLY LYS TYR VAL VAL CYS PHE SEQRES 10 A 335 ASP PRO LEU ASP GLY SER SER ASN ILE ASP CYS LEU VAL SEQRES 11 A 335 SER ILE GLY THR ILE PHE GLY ILE TYR ARG LYS ASN SER SEQRES 12 A 335 THR ASP GLU PRO SER GLU LYS ASP ALA LEU GLN PRO GLY SEQRES 13 A 335 ARG ASN LEU VAL ALA ALA GLY TYR ALA LEU TYR GLY SER SEQRES 14 A 335 ALA THR MET LEU VAL LEU ALA MET VAL ASN GLY VAL ASN SEQRES 15 A 335 CYS PHE MET LEU ASP PRO ALA ILE GLY GLU PHE ILE LEU SEQRES 16 A 335 VAL ASP ARG ASP VAL LYS ILE LYS LYS LYS GLY SER ILE SEQRES 17 A 335 TYR SER ILE ASN GLU GLY TYR ALA LYS GLU PHE ASP PRO SEQRES 18 A 335 ALA ILE THR GLU TYR ILE GLN ARG LYS LYS PHE PRO PRO SEQRES 19 A 335 ASP ASN SER ALA PRO TYR GLY ALA ARG TYR VAL GLY SER SEQRES 20 A 335 MET VAL ALA ASP VAL HIS ARG THR LEU VAL TYR GLY GLY SEQRES 21 A 335 ILE PHE MET TYR PRO ALA ASN LYS LYS SER PRO LYS GLY SEQRES 22 A 335 LYS LEU ARG LEU LEU TYR GLU CYS ASN PRO MET ALA TYR SEQRES 23 A 335 VAL MET GLU LYS ALA GLY GLY LEU ALA THR THR GLY LYS SEQRES 24 A 335 GLU ALA VAL LEU ASP ILE VAL PRO THR ASP ILE HIS GLN SEQRES 25 A 335 ARG ALA PRO ILE ILE LEU GLY SER PRO GLU ASP VAL THR SEQRES 26 A 335 GLU LEU LEU GLU ILE TYR GLN LYS HIS ALA HET F6P A 401 16 HET MN A 402 1 HET MN A 403 1 HET MN A 404 1 HET PO4 A 405 5 HET AMP A 406 23 HETNAM F6P 6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN F6P FRUCTOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D-FRUCTOSE; 6- HETSYN 2 F6P O-PHOSPHONO-D-FRUCTOSE; 6-O-PHOSPHONO-FRUCTOSE FORMUL 2 F6P C6 H13 O9 P FORMUL 3 MN 3(MN 2+) FORMUL 6 PO4 O4 P 3- FORMUL 7 AMP C10 H14 N5 O7 P FORMUL 8 HOH *228(H2 O) HELIX 1 1 THR A 12 ARG A 25 1 14 HELIX 2 2 GLY A 28 LYS A 50 1 23 HELIX 3 3 LYS A 72 SER A 88 1 17 HELIX 4 4 GLU A 106 GLU A 108 5 3 HELIX 5 5 GLY A 122 ILE A 126 5 5 HELIX 6 6 SER A 148 LEU A 153 5 6 HELIX 7 7 PRO A 155 LEU A 159 5 5 HELIX 8 8 ASN A 212 PHE A 219 5 8 HELIX 9 9 ASP A 220 PHE A 232 1 13 HELIX 10 10 SER A 247 GLY A 259 1 13 HELIX 11 11 GLU A 280 ALA A 291 1 12 HELIX 12 12 ALA A 301 ILE A 305 5 5 HELIX 13 13 SER A 320 HIS A 334 1 15 SHEET 1 A 2 ILE A 59 THR A 63 0 SHEET 2 A 2 GLN A 69 LYS A 71 -1 O VAL A 70 N ALA A 60 SHEET 1 B 8 ILE A 103 ILE A 104 0 SHEET 2 B 8 THR A 91 SER A 96 -1 N LEU A 94 O ILE A 103 SHEET 3 B 8 ARG A 110 ASP A 121 1 O PHE A 117 N VAL A 95 SHEET 4 B 8 ILE A 132 ARG A 140 -1 O TYR A 139 N VAL A 114 SHEET 5 B 8 ALA A 161 TYR A 167 -1 O ALA A 161 N ILE A 138 SHEET 6 B 8 THR A 171 MET A 177 -1 O ALA A 176 N ALA A 162 SHEET 7 B 8 GLY A 180 ASP A 187 -1 O PHE A 184 N LEU A 173 SHEET 8 B 8 GLU A 192 ASP A 197 -1 O ILE A 194 N MET A 185 SHEET 1 C 5 GLY A 241 ALA A 242 0 SHEET 2 C 5 ILE A 208 SER A 210 1 N TYR A 209 O GLY A 241 SHEET 3 C 5 ILE A 261 TYR A 264 1 O MET A 263 N SER A 210 SHEET 4 C 5 ILE A 316 GLY A 319 -1 O ILE A 316 N TYR A 264 SHEET 5 C 5 LEU A 294 THR A 296 -1 N THR A 296 O ILE A 317 LINK OD2 ASP A 68 MN MN A 403 1555 1555 2.18 LINK OE1 GLU A 97 MN MN A 402 1555 1555 2.16 LINK OD2 ASP A 118 MN MN A 402 1555 1555 2.02 LINK OD1 ASP A 118 MN MN A 404 1555 1555 2.38 LINK O LEU A 120 MN MN A 402 1555 1555 2.18 LINK OD1 ASP A 121 MN MN A 404 1555 1555 2.00 LINK OE1 GLU A 280 MN MN A 404 1555 1555 2.56 LINK MN MN A 402 O1 PO4 A 405 1555 1555 2.17 LINK MN MN A 402 O3 PO4 A 405 1555 1555 2.55 LINK MN MN A 403 O2 PO4 A 405 1555 1555 2.11 LINK MN MN A 403 O1 PO4 A 405 1555 1555 2.31 LINK MN MN A 404 O3 PO4 A 405 1555 1555 2.16 CRYST1 53.381 82.718 165.165 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018733 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006055 0.00000