data_4GBY # _entry.id 4GBY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GBY pdb_00004gby 10.2210/pdb4gby/pdb RCSB RCSB073992 ? ? WWPDB D_1000073992 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-10-31 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2024-02-28 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' atom_site_anisotrop 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' struct_site 8 3 'Structure model' struct_site_gen 9 4 'Structure model' chem_comp 10 4 'Structure model' chem_comp_atom 11 4 'Structure model' chem_comp_bond 12 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 4 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 5 3 'Structure model' '_chem_comp.mon_nstd_flag' 6 3 'Structure model' '_chem_comp.name' 7 3 'Structure model' '_chem_comp.type' 8 3 'Structure model' '_entity.pdbx_description' 9 3 'Structure model' '_pdbx_entity_nonpoly.name' 10 4 'Structure model' '_chem_comp.pdbx_synonyms' 11 4 'Structure model' '_database_2.pdbx_DOI' 12 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GBY _pdbx_database_status.recvd_initial_deposition_date 2012-07-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4GBZ . unspecified PDB 4GC0 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sun, L.F.' 1 'Zeng, X.' 2 'Yan, C.Y.' 3 'Yan, N.' 4 # _citation.id primary _citation.title 'Crystal structure of a bacterial homologue of glucose transporters GLUT1-4.' _citation.journal_abbrev Nature _citation.journal_volume 490 _citation.page_first 361 _citation.page_last 366 _citation.year 2012 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23075985 _citation.pdbx_database_id_DOI 10.1038/nature11524 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, L.' 1 ? primary 'Zeng, X.' 2 ? primary 'Yan, C.' 3 ? primary 'Sun, X.' 4 ? primary 'Gong, X.' 5 ? primary 'Rao, Y.' 6 ? primary 'Yan, N.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'D-xylose-proton symporter' 53642.629 1 ? ? ? ? 2 non-polymer man beta-D-xylopyranose 150.130 1 ? ? ? ? 3 non-polymer man 'nonyl beta-D-glucopyranoside' 306.395 4 ? ? ? ? 4 water nat water 18.015 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'D-xylose transporter' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN RFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL RKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP ETKKTQQTATL ; _entity_poly.pdbx_seq_one_letter_code_can ;MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN RFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL RKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP ETKKTQQTATL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 beta-D-xylopyranose XYP 3 'nonyl beta-D-glucopyranoside' BNG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 THR n 1 4 GLN n 1 5 TYR n 1 6 ASN n 1 7 SER n 1 8 SER n 1 9 TYR n 1 10 ILE n 1 11 PHE n 1 12 SER n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 VAL n 1 17 ALA n 1 18 THR n 1 19 LEU n 1 20 GLY n 1 21 GLY n 1 22 LEU n 1 23 LEU n 1 24 PHE n 1 25 GLY n 1 26 TYR n 1 27 ASP n 1 28 THR n 1 29 ALA n 1 30 VAL n 1 31 ILE n 1 32 SER n 1 33 GLY n 1 34 THR n 1 35 VAL n 1 36 GLU n 1 37 SER n 1 38 LEU n 1 39 ASN n 1 40 THR n 1 41 VAL n 1 42 PHE n 1 43 VAL n 1 44 ALA n 1 45 PRO n 1 46 GLN n 1 47 ASN n 1 48 LEU n 1 49 SER n 1 50 GLU n 1 51 SER n 1 52 ALA n 1 53 ALA n 1 54 ASN n 1 55 SER n 1 56 LEU n 1 57 LEU n 1 58 GLY n 1 59 PHE n 1 60 CYS n 1 61 VAL n 1 62 ALA n 1 63 SER n 1 64 ALA n 1 65 LEU n 1 66 ILE n 1 67 GLY n 1 68 CYS n 1 69 ILE n 1 70 ILE n 1 71 GLY n 1 72 GLY n 1 73 ALA n 1 74 LEU n 1 75 GLY n 1 76 GLY n 1 77 TYR n 1 78 CYS n 1 79 SER n 1 80 ASN n 1 81 ARG n 1 82 PHE n 1 83 GLY n 1 84 ARG n 1 85 ARG n 1 86 ASP n 1 87 SER n 1 88 LEU n 1 89 LYS n 1 90 ILE n 1 91 ALA n 1 92 ALA n 1 93 VAL n 1 94 LEU n 1 95 PHE n 1 96 PHE n 1 97 ILE n 1 98 SER n 1 99 GLY n 1 100 VAL n 1 101 GLY n 1 102 SER n 1 103 ALA n 1 104 TRP n 1 105 PRO n 1 106 GLU n 1 107 LEU n 1 108 GLY n 1 109 PHE n 1 110 THR n 1 111 SER n 1 112 ILE n 1 113 ASN n 1 114 PRO n 1 115 ASP n 1 116 ASN n 1 117 THR n 1 118 VAL n 1 119 PRO n 1 120 VAL n 1 121 TYR n 1 122 LEU n 1 123 ALA n 1 124 GLY n 1 125 TYR n 1 126 VAL n 1 127 PRO n 1 128 GLU n 1 129 PHE n 1 130 VAL n 1 131 ILE n 1 132 TYR n 1 133 ARG n 1 134 ILE n 1 135 ILE n 1 136 GLY n 1 137 GLY n 1 138 ILE n 1 139 GLY n 1 140 VAL n 1 141 GLY n 1 142 LEU n 1 143 ALA n 1 144 SER n 1 145 MET n 1 146 LEU n 1 147 SER n 1 148 PRO n 1 149 MET n 1 150 TYR n 1 151 ILE n 1 152 ALA n 1 153 GLU n 1 154 LEU n 1 155 ALA n 1 156 PRO n 1 157 ALA n 1 158 HIS n 1 159 ILE n 1 160 ARG n 1 161 GLY n 1 162 LYS n 1 163 LEU n 1 164 VAL n 1 165 SER n 1 166 PHE n 1 167 ASN n 1 168 GLN n 1 169 PHE n 1 170 ALA n 1 171 ILE n 1 172 ILE n 1 173 PHE n 1 174 GLY n 1 175 GLN n 1 176 LEU n 1 177 LEU n 1 178 VAL n 1 179 TYR n 1 180 CYS n 1 181 VAL n 1 182 ASN n 1 183 TYR n 1 184 PHE n 1 185 ILE n 1 186 ALA n 1 187 ARG n 1 188 SER n 1 189 GLY n 1 190 ASP n 1 191 ALA n 1 192 SER n 1 193 TRP n 1 194 LEU n 1 195 ASN n 1 196 THR n 1 197 ASP n 1 198 GLY n 1 199 TRP n 1 200 ARG n 1 201 TYR n 1 202 MET n 1 203 PHE n 1 204 ALA n 1 205 SER n 1 206 GLU n 1 207 CYS n 1 208 ILE n 1 209 PRO n 1 210 ALA n 1 211 LEU n 1 212 LEU n 1 213 PHE n 1 214 LEU n 1 215 MET n 1 216 LEU n 1 217 LEU n 1 218 TYR n 1 219 THR n 1 220 VAL n 1 221 PRO n 1 222 GLU n 1 223 SER n 1 224 PRO n 1 225 ARG n 1 226 TRP n 1 227 LEU n 1 228 MET n 1 229 SER n 1 230 ARG n 1 231 GLY n 1 232 LYS n 1 233 GLN n 1 234 GLU n 1 235 GLN n 1 236 ALA n 1 237 GLU n 1 238 GLY n 1 239 ILE n 1 240 LEU n 1 241 ARG n 1 242 LYS n 1 243 ILE n 1 244 MET n 1 245 GLY n 1 246 ASN n 1 247 THR n 1 248 LEU n 1 249 ALA n 1 250 THR n 1 251 GLN n 1 252 ALA n 1 253 VAL n 1 254 GLN n 1 255 GLU n 1 256 ILE n 1 257 LYS n 1 258 HIS n 1 259 SER n 1 260 LEU n 1 261 ASP n 1 262 HIS n 1 263 GLY n 1 264 ARG n 1 265 LYS n 1 266 THR n 1 267 GLY n 1 268 GLY n 1 269 ARG n 1 270 LEU n 1 271 LEU n 1 272 MET n 1 273 PHE n 1 274 GLY n 1 275 VAL n 1 276 GLY n 1 277 VAL n 1 278 ILE n 1 279 VAL n 1 280 ILE n 1 281 GLY n 1 282 VAL n 1 283 MET n 1 284 LEU n 1 285 SER n 1 286 ILE n 1 287 PHE n 1 288 GLN n 1 289 GLN n 1 290 PHE n 1 291 VAL n 1 292 GLY n 1 293 ILE n 1 294 ASN n 1 295 VAL n 1 296 VAL n 1 297 LEU n 1 298 TYR n 1 299 TYR n 1 300 ALA n 1 301 PRO n 1 302 GLU n 1 303 VAL n 1 304 PHE n 1 305 LYS n 1 306 THR n 1 307 LEU n 1 308 GLY n 1 309 ALA n 1 310 SER n 1 311 THR n 1 312 ASP n 1 313 ILE n 1 314 ALA n 1 315 LEU n 1 316 LEU n 1 317 GLN n 1 318 THR n 1 319 ILE n 1 320 ILE n 1 321 VAL n 1 322 GLY n 1 323 VAL n 1 324 ILE n 1 325 ASN n 1 326 LEU n 1 327 THR n 1 328 PHE n 1 329 THR n 1 330 VAL n 1 331 LEU n 1 332 ALA n 1 333 ILE n 1 334 MET n 1 335 THR n 1 336 VAL n 1 337 ASP n 1 338 LYS n 1 339 PHE n 1 340 GLY n 1 341 ARG n 1 342 LYS n 1 343 PRO n 1 344 LEU n 1 345 GLN n 1 346 ILE n 1 347 ILE n 1 348 GLY n 1 349 ALA n 1 350 LEU n 1 351 GLY n 1 352 MET n 1 353 ALA n 1 354 ILE n 1 355 GLY n 1 356 MET n 1 357 PHE n 1 358 SER n 1 359 LEU n 1 360 GLY n 1 361 THR n 1 362 ALA n 1 363 PHE n 1 364 TYR n 1 365 THR n 1 366 GLN n 1 367 ALA n 1 368 PRO n 1 369 GLY n 1 370 ILE n 1 371 VAL n 1 372 ALA n 1 373 LEU n 1 374 LEU n 1 375 SER n 1 376 MET n 1 377 LEU n 1 378 PHE n 1 379 TYR n 1 380 VAL n 1 381 ALA n 1 382 ALA n 1 383 PHE n 1 384 ALA n 1 385 MET n 1 386 SER n 1 387 TRP n 1 388 GLY n 1 389 PRO n 1 390 VAL n 1 391 CYS n 1 392 TRP n 1 393 VAL n 1 394 LEU n 1 395 LEU n 1 396 SER n 1 397 GLU n 1 398 ILE n 1 399 PHE n 1 400 PRO n 1 401 ASN n 1 402 ALA n 1 403 ILE n 1 404 ARG n 1 405 GLY n 1 406 LYS n 1 407 ALA n 1 408 LEU n 1 409 ALA n 1 410 ILE n 1 411 ALA n 1 412 VAL n 1 413 ALA n 1 414 ALA n 1 415 GLN n 1 416 TRP n 1 417 LEU n 1 418 ALA n 1 419 ASN n 1 420 TYR n 1 421 PHE n 1 422 VAL n 1 423 SER n 1 424 TRP n 1 425 THR n 1 426 PHE n 1 427 PRO n 1 428 MET n 1 429 MET n 1 430 ASP n 1 431 LYS n 1 432 ASN n 1 433 SER n 1 434 TRP n 1 435 LEU n 1 436 VAL n 1 437 ALA n 1 438 HIS n 1 439 PHE n 1 440 HIS n 1 441 ASN n 1 442 GLY n 1 443 PHE n 1 444 SER n 1 445 TYR n 1 446 TRP n 1 447 ILE n 1 448 TYR n 1 449 GLY n 1 450 CYS n 1 451 MET n 1 452 GLY n 1 453 VAL n 1 454 LEU n 1 455 ALA n 1 456 ALA n 1 457 LEU n 1 458 PHE n 1 459 MET n 1 460 TRP n 1 461 LYS n 1 462 PHE n 1 463 VAL n 1 464 PRO n 1 465 GLU n 1 466 THR n 1 467 LYS n 1 468 GLY n 1 469 LYS n 1 470 THR n 1 471 LEU n 1 472 GLU n 1 473 GLU n 1 474 LEU n 1 475 GLU n 1 476 ALA n 1 477 LEU n 1 478 TRP n 1 479 GLU n 1 480 PRO n 1 481 GLU n 1 482 THR n 1 483 LYS n 1 484 LYS n 1 485 THR n 1 486 GLN n 1 487 GLN n 1 488 THR n 1 489 ALA n 1 490 THR n 1 491 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'xylE, b4031, JW3991' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BNG D-saccharide n 'nonyl beta-D-glucopyranoside' 'Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside' 'C15 H30 O6' 306.395 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XYP 'D-saccharide, beta linking' . beta-D-xylopyranose 'beta-D-xylose; D-xylose; xylose' 'C5 H10 O5' 150.130 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BNG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-nonylglucoside XYP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpb XYP 'COMMON NAME' GMML 1.0 b-D-xylopyranose XYP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Xylp XYP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 GLN 4 4 ? ? ? A . n A 1 5 TYR 5 5 5 TYR ALA A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 CYS 60 60 60 CYS CYS A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 HIS 158 158 158 HIS HIS A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 GLN 175 175 175 GLN GLN A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 CYS 180 180 180 CYS CYS A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 ASP 190 190 190 ASP ASP A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 TRP 199 199 199 TRP TRP A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 TYR 201 201 201 TYR TYR A . n A 1 202 MET 202 202 202 MET MET A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 CYS 207 207 207 CYS CYS A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 MET 215 215 215 MET MET A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 PRO 221 221 221 PRO PRO A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 SER 223 223 223 SER SER A . n A 1 224 PRO 224 224 224 PRO PRO A . n A 1 225 ARG 225 225 225 ARG ARG A . n A 1 226 TRP 226 226 226 TRP TRP A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 MET 228 228 228 MET MET A . n A 1 229 SER 229 229 229 SER SER A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 GLN 233 233 233 GLN GLN A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 GLN 235 235 235 GLN GLN A . n A 1 236 ALA 236 236 236 ALA ALA A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 ARG 241 241 241 ARG ARG A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 MET 244 244 244 MET MET A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 ASN 246 246 246 ASN ASN A . n A 1 247 THR 247 247 247 THR THR A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 GLN 251 251 251 GLN GLN A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 VAL 253 253 253 VAL VAL A . n A 1 254 GLN 254 254 254 GLN GLN A . n A 1 255 GLU 255 255 255 GLU GLU A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 LYS 257 257 257 LYS LYS A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 SER 259 259 259 SER SER A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 ASP 261 261 261 ASP ASP A . n A 1 262 HIS 262 262 262 HIS HIS A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 ARG 264 264 264 ARG ARG A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 THR 266 266 266 THR THR A . n A 1 267 GLY 267 267 267 GLY GLY A . n A 1 268 GLY 268 268 268 GLY GLY A . n A 1 269 ARG 269 269 269 ARG ARG A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 MET 272 272 272 MET MET A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 GLY 276 276 276 GLY GLY A . n A 1 277 VAL 277 277 277 VAL VAL A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 VAL 279 279 279 VAL VAL A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 GLY 281 281 281 GLY GLY A . n A 1 282 VAL 282 282 282 VAL VAL A . n A 1 283 MET 283 283 283 MET MET A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 SER 285 285 285 SER SER A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 PHE 287 287 287 PHE PHE A . n A 1 288 GLN 288 288 288 GLN GLN A . n A 1 289 GLN 289 289 289 GLN GLN A . n A 1 290 PHE 290 290 290 PHE PHE A . n A 1 291 VAL 291 291 291 VAL VAL A . n A 1 292 GLY 292 292 292 GLY GLY A . n A 1 293 ILE 293 293 293 ILE ILE A . n A 1 294 ASN 294 294 294 ASN ASN A . n A 1 295 VAL 295 295 295 VAL VAL A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 LEU 297 297 297 LEU LEU A . n A 1 298 TYR 298 298 298 TYR TYR A . n A 1 299 TYR 299 299 299 TYR TYR A . n A 1 300 ALA 300 300 300 ALA ALA A . n A 1 301 PRO 301 301 301 PRO PRO A . n A 1 302 GLU 302 302 302 GLU GLU A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 PHE 304 304 304 PHE PHE A . n A 1 305 LYS 305 305 305 LYS LYS A . n A 1 306 THR 306 306 306 THR THR A . n A 1 307 LEU 307 307 307 LEU LEU A . n A 1 308 GLY 308 308 308 GLY GLY A . n A 1 309 ALA 309 309 309 ALA ALA A . n A 1 310 SER 310 310 310 SER SER A . n A 1 311 THR 311 311 311 THR THR A . n A 1 312 ASP 312 312 312 ASP ASP A . n A 1 313 ILE 313 313 313 ILE ILE A . n A 1 314 ALA 314 314 314 ALA ALA A . n A 1 315 LEU 315 315 315 LEU LEU A . n A 1 316 LEU 316 316 316 LEU LEU A . n A 1 317 GLN 317 317 317 GLN GLN A . n A 1 318 THR 318 318 318 THR THR A . n A 1 319 ILE 319 319 319 ILE ILE A . n A 1 320 ILE 320 320 320 ILE ILE A . n A 1 321 VAL 321 321 321 VAL VAL A . n A 1 322 GLY 322 322 322 GLY GLY A . n A 1 323 VAL 323 323 323 VAL VAL A . n A 1 324 ILE 324 324 324 ILE ILE A . n A 1 325 ASN 325 325 325 ASN ASN A . n A 1 326 LEU 326 326 326 LEU LEU A . n A 1 327 THR 327 327 327 THR THR A . n A 1 328 PHE 328 328 328 PHE PHE A . n A 1 329 THR 329 329 329 THR THR A . n A 1 330 VAL 330 330 330 VAL VAL A . n A 1 331 LEU 331 331 331 LEU LEU A . n A 1 332 ALA 332 332 332 ALA ALA A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 MET 334 334 334 MET MET A . n A 1 335 THR 335 335 335 THR THR A . n A 1 336 VAL 336 336 336 VAL VAL A . n A 1 337 ASP 337 337 337 ASP ASP A . n A 1 338 LYS 338 338 338 LYS LYS A . n A 1 339 PHE 339 339 339 PHE PHE A . n A 1 340 GLY 340 340 340 GLY GLY A . n A 1 341 ARG 341 341 341 ARG ARG A . n A 1 342 LYS 342 342 342 LYS LYS A . n A 1 343 PRO 343 343 343 PRO PRO A . n A 1 344 LEU 344 344 344 LEU LEU A . n A 1 345 GLN 345 345 345 GLN GLN A . n A 1 346 ILE 346 346 346 ILE ILE A . n A 1 347 ILE 347 347 347 ILE ILE A . n A 1 348 GLY 348 348 348 GLY GLY A . n A 1 349 ALA 349 349 349 ALA ALA A . n A 1 350 LEU 350 350 350 LEU LEU A . n A 1 351 GLY 351 351 351 GLY GLY A . n A 1 352 MET 352 352 352 MET MET A . n A 1 353 ALA 353 353 353 ALA ALA A . n A 1 354 ILE 354 354 354 ILE ILE A . n A 1 355 GLY 355 355 355 GLY GLY A . n A 1 356 MET 356 356 356 MET MET A . n A 1 357 PHE 357 357 357 PHE PHE A . n A 1 358 SER 358 358 358 SER SER A . n A 1 359 LEU 359 359 359 LEU LEU A . n A 1 360 GLY 360 360 360 GLY GLY A . n A 1 361 THR 361 361 361 THR THR A . n A 1 362 ALA 362 362 362 ALA ALA A . n A 1 363 PHE 363 363 363 PHE PHE A . n A 1 364 TYR 364 364 364 TYR TYR A . n A 1 365 THR 365 365 365 THR THR A . n A 1 366 GLN 366 366 366 GLN GLN A . n A 1 367 ALA 367 367 367 ALA ALA A . n A 1 368 PRO 368 368 368 PRO PRO A . n A 1 369 GLY 369 369 369 GLY GLY A . n A 1 370 ILE 370 370 370 ILE ILE A . n A 1 371 VAL 371 371 371 VAL VAL A . n A 1 372 ALA 372 372 372 ALA ALA A . n A 1 373 LEU 373 373 373 LEU LEU A . n A 1 374 LEU 374 374 374 LEU LEU A . n A 1 375 SER 375 375 375 SER SER A . n A 1 376 MET 376 376 376 MET MET A . n A 1 377 LEU 377 377 377 LEU LEU A . n A 1 378 PHE 378 378 378 PHE PHE A . n A 1 379 TYR 379 379 379 TYR TYR A . n A 1 380 VAL 380 380 380 VAL VAL A . n A 1 381 ALA 381 381 381 ALA ALA A . n A 1 382 ALA 382 382 382 ALA ALA A . n A 1 383 PHE 383 383 383 PHE PHE A . n A 1 384 ALA 384 384 384 ALA ALA A . n A 1 385 MET 385 385 385 MET MET A . n A 1 386 SER 386 386 386 SER SER A . n A 1 387 TRP 387 387 387 TRP TRP A . n A 1 388 GLY 388 388 388 GLY GLY A . n A 1 389 PRO 389 389 389 PRO PRO A . n A 1 390 VAL 390 390 390 VAL VAL A . n A 1 391 CYS 391 391 391 CYS CYS A . n A 1 392 TRP 392 392 392 TRP TRP A . n A 1 393 VAL 393 393 393 VAL VAL A . n A 1 394 LEU 394 394 394 LEU LEU A . n A 1 395 LEU 395 395 395 LEU LEU A . n A 1 396 SER 396 396 396 SER SER A . n A 1 397 GLU 397 397 397 GLU GLU A . n A 1 398 ILE 398 398 398 ILE ILE A . n A 1 399 PHE 399 399 399 PHE PHE A . n A 1 400 PRO 400 400 400 PRO PRO A . n A 1 401 ASN 401 401 401 ASN ASN A . n A 1 402 ALA 402 402 402 ALA ALA A . n A 1 403 ILE 403 403 403 ILE ILE A . n A 1 404 ARG 404 404 404 ARG ARG A . n A 1 405 GLY 405 405 405 GLY GLY A . n A 1 406 LYS 406 406 406 LYS LYS A . n A 1 407 ALA 407 407 407 ALA ALA A . n A 1 408 LEU 408 408 408 LEU LEU A . n A 1 409 ALA 409 409 409 ALA ALA A . n A 1 410 ILE 410 410 410 ILE ILE A . n A 1 411 ALA 411 411 411 ALA ALA A . n A 1 412 VAL 412 412 412 VAL VAL A . n A 1 413 ALA 413 413 413 ALA ALA A . n A 1 414 ALA 414 414 414 ALA ALA A . n A 1 415 GLN 415 415 415 GLN GLN A . n A 1 416 TRP 416 416 416 TRP TRP A . n A 1 417 LEU 417 417 417 LEU LEU A . n A 1 418 ALA 418 418 418 ALA ALA A . n A 1 419 ASN 419 419 419 ASN ASN A . n A 1 420 TYR 420 420 420 TYR TYR A . n A 1 421 PHE 421 421 421 PHE PHE A . n A 1 422 VAL 422 422 422 VAL VAL A . n A 1 423 SER 423 423 423 SER SER A . n A 1 424 TRP 424 424 424 TRP TRP A . n A 1 425 THR 425 425 425 THR THR A . n A 1 426 PHE 426 426 426 PHE PHE A . n A 1 427 PRO 427 427 427 PRO PRO A . n A 1 428 MET 428 428 428 MET MET A . n A 1 429 MET 429 429 429 MET MET A . n A 1 430 ASP 430 430 430 ASP ASP A . n A 1 431 LYS 431 431 431 LYS LYS A . n A 1 432 ASN 432 432 432 ASN ASN A . n A 1 433 SER 433 433 433 SER SER A . n A 1 434 TRP 434 434 434 TRP TRP A . n A 1 435 LEU 435 435 435 LEU LEU A . n A 1 436 VAL 436 436 436 VAL VAL A . n A 1 437 ALA 437 437 437 ALA ALA A . n A 1 438 HIS 438 438 438 HIS HIS A . n A 1 439 PHE 439 439 439 PHE PHE A . n A 1 440 HIS 440 440 440 HIS HIS A . n A 1 441 ASN 441 441 441 ASN ASN A . n A 1 442 GLY 442 442 442 GLY GLY A . n A 1 443 PHE 443 443 443 PHE PHE A . n A 1 444 SER 444 444 444 SER SER A . n A 1 445 TYR 445 445 445 TYR TYR A . n A 1 446 TRP 446 446 446 TRP TRP A . n A 1 447 ILE 447 447 447 ILE ILE A . n A 1 448 TYR 448 448 448 TYR TYR A . n A 1 449 GLY 449 449 449 GLY GLY A . n A 1 450 CYS 450 450 450 CYS CYS A . n A 1 451 MET 451 451 451 MET MET A . n A 1 452 GLY 452 452 452 GLY GLY A . n A 1 453 VAL 453 453 453 VAL VAL A . n A 1 454 LEU 454 454 454 LEU LEU A . n A 1 455 ALA 455 455 455 ALA ALA A . n A 1 456 ALA 456 456 456 ALA ALA A . n A 1 457 LEU 457 457 457 LEU LEU A . n A 1 458 PHE 458 458 458 PHE PHE A . n A 1 459 MET 459 459 459 MET MET A . n A 1 460 TRP 460 460 460 TRP TRP A . n A 1 461 LYS 461 461 461 LYS LYS A . n A 1 462 PHE 462 462 462 PHE PHE A . n A 1 463 VAL 463 463 463 VAL VAL A . n A 1 464 PRO 464 464 464 PRO PRO A . n A 1 465 GLU 465 465 465 GLU GLU A . n A 1 466 THR 466 466 466 THR THR A . n A 1 467 LYS 467 467 467 LYS LYS A . n A 1 468 GLY 468 468 468 GLY GLY A . n A 1 469 LYS 469 469 469 LYS LYS A . n A 1 470 THR 470 470 470 THR THR A . n A 1 471 LEU 471 471 471 LEU LEU A . n A 1 472 GLU 472 472 472 GLU GLU A . n A 1 473 GLU 473 473 473 GLU GLU A . n A 1 474 LEU 474 474 474 LEU LEU A . n A 1 475 GLU 475 475 475 GLU GLU A . n A 1 476 ALA 476 476 476 ALA ALA A . n A 1 477 LEU 477 477 477 LEU LEU A . n A 1 478 TRP 478 478 478 TRP TRP A . n A 1 479 GLU 479 479 479 GLU ALA A . n A 1 480 PRO 480 480 ? ? ? A . n A 1 481 GLU 481 481 ? ? ? A . n A 1 482 THR 482 482 ? ? ? A . n A 1 483 LYS 483 483 ? ? ? A . n A 1 484 LYS 484 484 ? ? ? A . n A 1 485 THR 485 485 ? ? ? A . n A 1 486 GLN 486 486 ? ? ? A . n A 1 487 GLN 487 487 ? ? ? A . n A 1 488 THR 488 488 ? ? ? A . n A 1 489 ALA 489 489 ? ? ? A . n A 1 490 THR 490 490 ? ? ? A . n A 1 491 LEU 491 491 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XYP 1 501 1 XYP DXY A . C 3 BNG 1 502 1 BNG BNG A . D 3 BNG 1 503 2 BNG BNG A . E 3 BNG 1 504 3 BNG BNG A . F 3 BNG 1 505 4 BNG BNG A . G 4 HOH 1 601 1 HOH HOH A . G 4 HOH 2 602 2 HOH HOH A . G 4 HOH 3 603 3 HOH HOH A . G 4 HOH 4 604 4 HOH HOH A . G 4 HOH 5 605 5 HOH HOH A . G 4 HOH 6 606 6 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 5 ? CG ? A TYR 5 CG 2 1 Y 1 A TYR 5 ? CD1 ? A TYR 5 CD1 3 1 Y 1 A TYR 5 ? CD2 ? A TYR 5 CD2 4 1 Y 1 A TYR 5 ? CE1 ? A TYR 5 CE1 5 1 Y 1 A TYR 5 ? CE2 ? A TYR 5 CE2 6 1 Y 1 A TYR 5 ? CZ ? A TYR 5 CZ 7 1 Y 1 A TYR 5 ? OH ? A TYR 5 OH 8 1 Y 1 A PHE 184 ? CG ? A PHE 184 CG 9 1 Y 1 A PHE 184 ? CD1 ? A PHE 184 CD1 10 1 Y 1 A PHE 184 ? CD2 ? A PHE 184 CD2 11 1 Y 1 A PHE 184 ? CE1 ? A PHE 184 CE1 12 1 Y 1 A PHE 184 ? CE2 ? A PHE 184 CE2 13 1 Y 1 A PHE 184 ? CZ ? A PHE 184 CZ 14 1 Y 1 A ARG 187 ? CG ? A ARG 187 CG 15 1 Y 1 A ARG 187 ? CD ? A ARG 187 CD 16 1 Y 1 A ARG 187 ? NE ? A ARG 187 NE 17 1 Y 1 A ARG 187 ? CZ ? A ARG 187 CZ 18 1 Y 1 A ARG 187 ? NH1 ? A ARG 187 NH1 19 1 Y 1 A ARG 187 ? NH2 ? A ARG 187 NH2 20 1 Y 1 A GLN 235 ? CG ? A GLN 235 CG 21 1 Y 1 A GLN 235 ? CD ? A GLN 235 CD 22 1 Y 1 A GLN 235 ? OE1 ? A GLN 235 OE1 23 1 Y 1 A GLN 235 ? NE2 ? A GLN 235 NE2 24 1 Y 1 A ARG 241 ? CG ? A ARG 241 CG 25 1 Y 1 A ARG 241 ? CD ? A ARG 241 CD 26 1 Y 1 A ARG 241 ? NE ? A ARG 241 NE 27 1 Y 1 A ARG 241 ? CZ ? A ARG 241 CZ 28 1 Y 1 A ARG 241 ? NH1 ? A ARG 241 NH1 29 1 Y 1 A ARG 241 ? NH2 ? A ARG 241 NH2 30 1 Y 1 A LYS 257 ? CG ? A LYS 257 CG 31 1 Y 1 A LYS 257 ? CD ? A LYS 257 CD 32 1 Y 1 A LYS 257 ? CE ? A LYS 257 CE 33 1 Y 1 A LYS 257 ? NZ ? A LYS 257 NZ 34 1 Y 1 A ARG 269 ? CG ? A ARG 269 CG 35 1 Y 1 A ARG 269 ? CD ? A ARG 269 CD 36 1 Y 1 A ARG 269 ? NE ? A ARG 269 NE 37 1 Y 1 A ARG 269 ? CZ ? A ARG 269 CZ 38 1 Y 1 A ARG 269 ? NH1 ? A ARG 269 NH1 39 1 Y 1 A ARG 269 ? NH2 ? A ARG 269 NH2 40 1 Y 1 A PHE 273 ? CG ? A PHE 273 CG 41 1 Y 1 A PHE 273 ? CD1 ? A PHE 273 CD1 42 1 Y 1 A PHE 273 ? CD2 ? A PHE 273 CD2 43 1 Y 1 A PHE 273 ? CE1 ? A PHE 273 CE1 44 1 Y 1 A PHE 273 ? CE2 ? A PHE 273 CE2 45 1 Y 1 A PHE 273 ? CZ ? A PHE 273 CZ 46 1 Y 1 A LYS 305 ? CG ? A LYS 305 CG 47 1 Y 1 A LYS 305 ? CD ? A LYS 305 CD 48 1 Y 1 A LYS 305 ? CE ? A LYS 305 CE 49 1 Y 1 A LYS 305 ? NZ ? A LYS 305 NZ 50 1 Y 1 A ASP 312 ? CG ? A ASP 312 CG 51 1 Y 1 A ASP 312 ? OD1 ? A ASP 312 OD1 52 1 Y 1 A ASP 312 ? OD2 ? A ASP 312 OD2 53 1 Y 1 A LYS 406 ? CD ? A LYS 406 CD 54 1 Y 1 A LYS 406 ? CE ? A LYS 406 CE 55 1 Y 1 A LYS 406 ? NZ ? A LYS 406 NZ 56 1 Y 1 A LYS 461 ? CG ? A LYS 461 CG 57 1 Y 1 A LYS 461 ? CD ? A LYS 461 CD 58 1 Y 1 A LYS 461 ? CE ? A LYS 461 CE 59 1 Y 1 A LYS 461 ? NZ ? A LYS 461 NZ 60 1 Y 1 A LYS 469 ? CG ? A LYS 469 CG 61 1 Y 1 A LYS 469 ? CD ? A LYS 469 CD 62 1 Y 1 A LYS 469 ? CE ? A LYS 469 CE 63 1 Y 1 A LYS 469 ? NZ ? A LYS 469 NZ 64 1 Y 1 A GLU 479 ? CG ? A GLU 479 CG 65 1 Y 1 A GLU 479 ? CD ? A GLU 479 CD 66 1 Y 1 A GLU 479 ? OE1 ? A GLU 479 OE1 67 1 Y 1 A GLU 479 ? OE2 ? A GLU 479 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4GBY _cell.length_a 95.290 _cell.length_b 95.290 _cell.length_c 168.181 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GBY _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GBY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.56 _exptl_crystal.density_percent_sol 65.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.6 _exptl_crystal_grow.pdbx_details '40 % (w/v) PEG400, 0.05 M Glycine pH 9.6 and 0.1 M LiCl, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2011-10-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'rotated-inclined double-crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 4GBY _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.77 _reflns.number_obs 19996 _reflns.number_all 20321 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.77 _reflns_shell.d_res_low 2.87 _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GBY _refine.ls_number_reflns_obs 19517 _refine.ls_number_reflns_all 20268 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.03 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.714 _refine.ls_d_res_high 2.808 _refine.ls_percent_reflns_obs 99.69 _refine.ls_R_factor_obs 0.2298 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2275 _refine.ls_R_factor_R_free 0.2736 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.18 _refine.ls_number_reflns_R_free 1004 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -7.4306 _refine.aniso_B[2][2] -7.4306 _refine.aniso_B[3][3] 14.8613 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.321 _refine.solvent_model_param_bsol 53.506 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.60 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.49 _refine.pdbx_overall_phase_error 24.92 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3587 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 94 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 3687 _refine_hist.d_res_high 2.808 _refine_hist.d_res_low 29.714 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.010 ? ? 3774 ? 'X-RAY DIFFRACTION' f_angle_d 1.280 ? ? 5137 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 17.121 ? ? 1309 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.078 ? ? 608 ? 'X-RAY DIFFRACTION' f_plane_restr 0.006 ? ? 620 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.808 2.8837 2641 0.3644 100.00 0.4304 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.8837 2.9685 2630 0.3456 100.00 0.4564 . . 121 . . . . 'X-RAY DIFFRACTION' . 2.9685 3.0643 2628 0.2988 100.00 0.3239 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.0643 3.1737 2659 0.2654 100.00 0.3521 . . 127 . . . . 'X-RAY DIFFRACTION' . 3.1737 3.3006 2624 0.2275 100.00 0.2736 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.3006 3.4506 2607 0.2144 100.00 0.2604 . . 160 . . . . 'X-RAY DIFFRACTION' . 3.4506 3.6322 2635 0.2060 100.00 0.2326 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.6322 3.8593 2640 0.2043 100.00 0.2668 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.8593 4.1566 2601 0.2100 100.00 0.2607 . . 158 . . . . 'X-RAY DIFFRACTION' . 4.1566 4.5735 2614 0.2032 100.00 0.2594 . . 157 . . . . 'X-RAY DIFFRACTION' . 4.5735 5.2322 2646 0.1956 100.00 0.2190 . . 138 . . . . 'X-RAY DIFFRACTION' . 5.2322 6.5802 2594 0.2429 99.00 0.2920 . . 155 . . . . 'X-RAY DIFFRACTION' . 6.5802 29.7159 2588 0.2338 97.00 0.2785 . . 120 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4GBY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GBY _struct.title 'The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to D-xylose' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GBY _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'MFS, D-xylose:proton symporter, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code XYLE_ECOLI _struct_ref.pdbx_db_accession P0AGF4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN RFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL RKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP ETKKTQQTATL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GBY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 491 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0AGF4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 491 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 491 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? ILE A 31 ? SER A 7 ILE A 31 1 ? 25 HELX_P HELX_P2 2 THR A 34 ? PHE A 42 ? THR A 34 PHE A 42 1 ? 9 HELX_P HELX_P3 3 VAL A 43 ? ASN A 47 ? VAL A 43 ASN A 47 5 ? 5 HELX_P HELX_P4 4 SER A 49 ? SER A 63 ? SER A 49 SER A 63 1 ? 15 HELX_P HELX_P5 5 SER A 63 ? PHE A 82 ? SER A 63 PHE A 82 1 ? 20 HELX_P HELX_P6 6 GLY A 83 ? TRP A 104 ? GLY A 83 TRP A 104 1 ? 22 HELX_P HELX_P7 7 PRO A 119 ? GLY A 124 ? PRO A 119 GLY A 124 5 ? 6 HELX_P HELX_P8 8 TYR A 125 ? GLU A 153 ? TYR A 125 GLU A 153 1 ? 29 HELX_P HELX_P9 9 ILE A 159 ? ARG A 187 ? ILE A 159 ARG A 187 1 ? 29 HELX_P HELX_P10 10 ASP A 190 ? ASN A 195 ? ASP A 190 ASN A 195 1 ? 6 HELX_P HELX_P11 11 ASP A 197 ? SER A 205 ? ASP A 197 SER A 205 1 ? 9 HELX_P HELX_P12 12 GLU A 206 ? LEU A 217 ? GLU A 206 LEU A 217 1 ? 12 HELX_P HELX_P13 13 TYR A 218 ? VAL A 220 ? TYR A 218 VAL A 220 5 ? 3 HELX_P HELX_P14 14 SER A 223 ? ARG A 230 ? SER A 223 ARG A 230 1 ? 8 HELX_P HELX_P15 15 LYS A 232 ? GLY A 267 ? LYS A 232 GLY A 267 1 ? 36 HELX_P HELX_P16 16 GLY A 268 ? PHE A 273 ? GLY A 268 PHE A 273 1 ? 6 HELX_P HELX_P17 17 GLY A 276 ? VAL A 291 ? GLY A 276 VAL A 291 1 ? 16 HELX_P HELX_P18 18 GLY A 292 ? LEU A 307 ? GLY A 292 LEU A 307 1 ? 16 HELX_P HELX_P19 19 SER A 310 ? GLY A 340 ? SER A 310 GLY A 340 1 ? 31 HELX_P HELX_P20 20 ARG A 341 ? THR A 365 ? ARG A 341 THR A 365 1 ? 25 HELX_P HELX_P21 21 GLY A 369 ? MET A 385 ? GLY A 369 MET A 385 1 ? 17 HELX_P HELX_P22 22 GLY A 388 ? ILE A 398 ? GLY A 388 ILE A 398 1 ? 11 HELX_P HELX_P23 23 ILE A 403 ? TRP A 424 ? ILE A 403 TRP A 424 1 ? 22 HELX_P HELX_P24 24 TRP A 424 ? MET A 429 ? TRP A 424 MET A 429 1 ? 6 HELX_P HELX_P25 25 ASP A 430 ? HIS A 440 ? ASP A 430 HIS A 440 1 ? 11 HELX_P HELX_P26 26 GLY A 442 ? VAL A 463 ? GLY A 442 VAL A 463 1 ? 22 HELX_P HELX_P27 27 THR A 470 ? GLU A 475 ? THR A 470 GLU A 475 1 ? 6 HELX_P HELX_P28 28 ALA A 476 ? TRP A 478 ? ALA A 476 TRP A 478 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 7 ? ? -179.42 -55.31 2 1 VAL A 43 ? ? -94.73 -60.61 3 1 PRO A 45 ? ? -68.97 10.42 4 1 LEU A 107 ? ? -25.79 -88.97 5 1 PRO A 156 ? ? -59.57 -122.29 6 1 ALA A 157 ? ? -150.10 -34.64 7 1 ARG A 187 ? ? -90.17 46.71 8 1 ASP A 190 ? ? -31.14 142.12 9 1 ASP A 197 ? ? -144.42 -30.09 10 1 MET A 244 ? ? -157.19 15.19 11 1 THR A 306 ? ? -65.71 -78.55 12 1 LEU A 307 ? ? -55.90 -73.45 13 1 ALA A 309 ? ? 35.90 -126.18 14 1 SER A 310 ? ? 34.29 98.76 15 1 ALA A 314 ? ? -34.90 -84.84 16 1 LEU A 315 ? ? -34.10 -39.48 17 1 PRO A 368 ? ? -39.88 -39.40 18 1 SER A 386 ? ? -150.20 -99.99 19 1 TRP A 424 ? ? -135.18 -66.71 20 1 ASP A 430 ? ? -179.04 69.32 21 1 HIS A 440 ? ? -123.04 -68.07 22 1 GLU A 475 ? ? -49.64 -19.84 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.1233 _pdbx_refine_tls.origin_y -25.7359 _pdbx_refine_tls.origin_z -3.5561 _pdbx_refine_tls.T[1][1] 0.3478 _pdbx_refine_tls.T[2][2] 0.1803 _pdbx_refine_tls.T[3][3] 0.1997 _pdbx_refine_tls.T[1][2] 0.0561 _pdbx_refine_tls.T[1][3] 0.0085 _pdbx_refine_tls.T[2][3] 0.0166 _pdbx_refine_tls.L[1][1] 1.9720 _pdbx_refine_tls.L[2][2] 1.1645 _pdbx_refine_tls.L[3][3] 1.7410 _pdbx_refine_tls.L[1][2] 0.0451 _pdbx_refine_tls.L[1][3] -0.4957 _pdbx_refine_tls.L[2][3] 0.1649 _pdbx_refine_tls.S[1][1] -0.1018 _pdbx_refine_tls.S[1][2] -0.1504 _pdbx_refine_tls.S[1][3] 0.0123 _pdbx_refine_tls.S[2][1] 0.1568 _pdbx_refine_tls.S[2][2] 0.1313 _pdbx_refine_tls.S[2][3] -0.1721 _pdbx_refine_tls.S[3][1] 0.0854 _pdbx_refine_tls.S[3][2] 0.0839 _pdbx_refine_tls.S[3][3] 0.0460 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A GLN 4 ? A GLN 4 5 1 Y 1 A PRO 480 ? A PRO 480 6 1 Y 1 A GLU 481 ? A GLU 481 7 1 Y 1 A THR 482 ? A THR 482 8 1 Y 1 A LYS 483 ? A LYS 483 9 1 Y 1 A LYS 484 ? A LYS 484 10 1 Y 1 A THR 485 ? A THR 485 11 1 Y 1 A GLN 486 ? A GLN 486 12 1 Y 1 A GLN 487 ? A GLN 487 13 1 Y 1 A THR 488 ? A THR 488 14 1 Y 1 A ALA 489 ? A ALA 489 15 1 Y 1 A THR 490 ? A THR 490 16 1 Y 1 A LEU 491 ? A LEU 491 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BNG C1 C N R 74 BNG C2 C N R 75 BNG C3 C N S 76 BNG C4 C N S 77 BNG C5 C N R 78 BNG C6 C N N 79 BNG "C1'" C N N 80 BNG "C2'" C N N 81 BNG "C3'" C N N 82 BNG "C4'" C N N 83 BNG "C5'" C N N 84 BNG "C6'" C N N 85 BNG "C7'" C N N 86 BNG "C8'" C N N 87 BNG "C9'" C N N 88 BNG O1 O N N 89 BNG O2 O N N 90 BNG O3 O N N 91 BNG O4 O N N 92 BNG O5 O N N 93 BNG O6 O N N 94 BNG H1 H N N 95 BNG H2 H N N 96 BNG H3 H N N 97 BNG H4 H N N 98 BNG H5 H N N 99 BNG H61 H N N 100 BNG H62 H N N 101 BNG "H1'1" H N N 102 BNG "H1'2" H N N 103 BNG "H2'1" H N N 104 BNG "H2'2" H N N 105 BNG "H3'1" H N N 106 BNG "H3'2" H N N 107 BNG "H4'1" H N N 108 BNG "H4'2" H N N 109 BNG "H5'1" H N N 110 BNG "H5'2" H N N 111 BNG "H6'1" H N N 112 BNG "H6'2" H N N 113 BNG "H7'1" H N N 114 BNG "H7'2" H N N 115 BNG "H8'1" H N N 116 BNG "H8'2" H N N 117 BNG "H9'1" H N N 118 BNG "H9'2" H N N 119 BNG "H9'3" H N N 120 BNG HO2 H N N 121 BNG HO3 H N N 122 BNG HO4 H N N 123 BNG HO6 H N N 124 CYS N N N N 125 CYS CA C N R 126 CYS C C N N 127 CYS O O N N 128 CYS CB C N N 129 CYS SG S N N 130 CYS OXT O N N 131 CYS H H N N 132 CYS H2 H N N 133 CYS HA H N N 134 CYS HB2 H N N 135 CYS HB3 H N N 136 CYS HG H N N 137 CYS HXT H N N 138 GLN N N N N 139 GLN CA C N S 140 GLN C C N N 141 GLN O O N N 142 GLN CB C N N 143 GLN CG C N N 144 GLN CD C N N 145 GLN OE1 O N N 146 GLN NE2 N N N 147 GLN OXT O N N 148 GLN H H N N 149 GLN H2 H N N 150 GLN HA H N N 151 GLN HB2 H N N 152 GLN HB3 H N N 153 GLN HG2 H N N 154 GLN HG3 H N N 155 GLN HE21 H N N 156 GLN HE22 H N N 157 GLN HXT H N N 158 GLU N N N N 159 GLU CA C N S 160 GLU C C N N 161 GLU O O N N 162 GLU CB C N N 163 GLU CG C N N 164 GLU CD C N N 165 GLU OE1 O N N 166 GLU OE2 O N N 167 GLU OXT O N N 168 GLU H H N N 169 GLU H2 H N N 170 GLU HA H N N 171 GLU HB2 H N N 172 GLU HB3 H N N 173 GLU HG2 H N N 174 GLU HG3 H N N 175 GLU HE2 H N N 176 GLU HXT H N N 177 GLY N N N N 178 GLY CA C N N 179 GLY C C N N 180 GLY O O N N 181 GLY OXT O N N 182 GLY H H N N 183 GLY H2 H N N 184 GLY HA2 H N N 185 GLY HA3 H N N 186 GLY HXT H N N 187 HIS N N N N 188 HIS CA C N S 189 HIS C C N N 190 HIS O O N N 191 HIS CB C N N 192 HIS CG C Y N 193 HIS ND1 N Y N 194 HIS CD2 C Y N 195 HIS CE1 C Y N 196 HIS NE2 N Y N 197 HIS OXT O N N 198 HIS H H N N 199 HIS H2 H N N 200 HIS HA H N N 201 HIS HB2 H N N 202 HIS HB3 H N N 203 HIS HD1 H N N 204 HIS HD2 H N N 205 HIS HE1 H N N 206 HIS HE2 H N N 207 HIS HXT H N N 208 HOH O O N N 209 HOH H1 H N N 210 HOH H2 H N N 211 ILE N N N N 212 ILE CA C N S 213 ILE C C N N 214 ILE O O N N 215 ILE CB C N S 216 ILE CG1 C N N 217 ILE CG2 C N N 218 ILE CD1 C N N 219 ILE OXT O N N 220 ILE H H N N 221 ILE H2 H N N 222 ILE HA H N N 223 ILE HB H N N 224 ILE HG12 H N N 225 ILE HG13 H N N 226 ILE HG21 H N N 227 ILE HG22 H N N 228 ILE HG23 H N N 229 ILE HD11 H N N 230 ILE HD12 H N N 231 ILE HD13 H N N 232 ILE HXT H N N 233 LEU N N N N 234 LEU CA C N S 235 LEU C C N N 236 LEU O O N N 237 LEU CB C N N 238 LEU CG C N N 239 LEU CD1 C N N 240 LEU CD2 C N N 241 LEU OXT O N N 242 LEU H H N N 243 LEU H2 H N N 244 LEU HA H N N 245 LEU HB2 H N N 246 LEU HB3 H N N 247 LEU HG H N N 248 LEU HD11 H N N 249 LEU HD12 H N N 250 LEU HD13 H N N 251 LEU HD21 H N N 252 LEU HD22 H N N 253 LEU HD23 H N N 254 LEU HXT H N N 255 LYS N N N N 256 LYS CA C N S 257 LYS C C N N 258 LYS O O N N 259 LYS CB C N N 260 LYS CG C N N 261 LYS CD C N N 262 LYS CE C N N 263 LYS NZ N N N 264 LYS OXT O N N 265 LYS H H N N 266 LYS H2 H N N 267 LYS HA H N N 268 LYS HB2 H N N 269 LYS HB3 H N N 270 LYS HG2 H N N 271 LYS HG3 H N N 272 LYS HD2 H N N 273 LYS HD3 H N N 274 LYS HE2 H N N 275 LYS HE3 H N N 276 LYS HZ1 H N N 277 LYS HZ2 H N N 278 LYS HZ3 H N N 279 LYS HXT H N N 280 MET N N N N 281 MET CA C N S 282 MET C C N N 283 MET O O N N 284 MET CB C N N 285 MET CG C N N 286 MET SD S N N 287 MET CE C N N 288 MET OXT O N N 289 MET H H N N 290 MET H2 H N N 291 MET HA H N N 292 MET HB2 H N N 293 MET HB3 H N N 294 MET HG2 H N N 295 MET HG3 H N N 296 MET HE1 H N N 297 MET HE2 H N N 298 MET HE3 H N N 299 MET HXT H N N 300 PHE N N N N 301 PHE CA C N S 302 PHE C C N N 303 PHE O O N N 304 PHE CB C N N 305 PHE CG C Y N 306 PHE CD1 C Y N 307 PHE CD2 C Y N 308 PHE CE1 C Y N 309 PHE CE2 C Y N 310 PHE CZ C Y N 311 PHE OXT O N N 312 PHE H H N N 313 PHE H2 H N N 314 PHE HA H N N 315 PHE HB2 H N N 316 PHE HB3 H N N 317 PHE HD1 H N N 318 PHE HD2 H N N 319 PHE HE1 H N N 320 PHE HE2 H N N 321 PHE HZ H N N 322 PHE HXT H N N 323 PRO N N N N 324 PRO CA C N S 325 PRO C C N N 326 PRO O O N N 327 PRO CB C N N 328 PRO CG C N N 329 PRO CD C N N 330 PRO OXT O N N 331 PRO H H N N 332 PRO HA H N N 333 PRO HB2 H N N 334 PRO HB3 H N N 335 PRO HG2 H N N 336 PRO HG3 H N N 337 PRO HD2 H N N 338 PRO HD3 H N N 339 PRO HXT H N N 340 SER N N N N 341 SER CA C N S 342 SER C C N N 343 SER O O N N 344 SER CB C N N 345 SER OG O N N 346 SER OXT O N N 347 SER H H N N 348 SER H2 H N N 349 SER HA H N N 350 SER HB2 H N N 351 SER HB3 H N N 352 SER HG H N N 353 SER HXT H N N 354 THR N N N N 355 THR CA C N S 356 THR C C N N 357 THR O O N N 358 THR CB C N R 359 THR OG1 O N N 360 THR CG2 C N N 361 THR OXT O N N 362 THR H H N N 363 THR H2 H N N 364 THR HA H N N 365 THR HB H N N 366 THR HG1 H N N 367 THR HG21 H N N 368 THR HG22 H N N 369 THR HG23 H N N 370 THR HXT H N N 371 TRP N N N N 372 TRP CA C N S 373 TRP C C N N 374 TRP O O N N 375 TRP CB C N N 376 TRP CG C Y N 377 TRP CD1 C Y N 378 TRP CD2 C Y N 379 TRP NE1 N Y N 380 TRP CE2 C Y N 381 TRP CE3 C Y N 382 TRP CZ2 C Y N 383 TRP CZ3 C Y N 384 TRP CH2 C Y N 385 TRP OXT O N N 386 TRP H H N N 387 TRP H2 H N N 388 TRP HA H N N 389 TRP HB2 H N N 390 TRP HB3 H N N 391 TRP HD1 H N N 392 TRP HE1 H N N 393 TRP HE3 H N N 394 TRP HZ2 H N N 395 TRP HZ3 H N N 396 TRP HH2 H N N 397 TRP HXT H N N 398 TYR N N N N 399 TYR CA C N S 400 TYR C C N N 401 TYR O O N N 402 TYR CB C N N 403 TYR CG C Y N 404 TYR CD1 C Y N 405 TYR CD2 C Y N 406 TYR CE1 C Y N 407 TYR CE2 C Y N 408 TYR CZ C Y N 409 TYR OH O N N 410 TYR OXT O N N 411 TYR H H N N 412 TYR H2 H N N 413 TYR HA H N N 414 TYR HB2 H N N 415 TYR HB3 H N N 416 TYR HD1 H N N 417 TYR HD2 H N N 418 TYR HE1 H N N 419 TYR HE2 H N N 420 TYR HH H N N 421 TYR HXT H N N 422 VAL N N N N 423 VAL CA C N S 424 VAL C C N N 425 VAL O O N N 426 VAL CB C N N 427 VAL CG1 C N N 428 VAL CG2 C N N 429 VAL OXT O N N 430 VAL H H N N 431 VAL H2 H N N 432 VAL HA H N N 433 VAL HB H N N 434 VAL HG11 H N N 435 VAL HG12 H N N 436 VAL HG13 H N N 437 VAL HG21 H N N 438 VAL HG22 H N N 439 VAL HG23 H N N 440 VAL HXT H N N 441 XYP O1 O N N 442 XYP C1 C N R 443 XYP C2 C N R 444 XYP C3 C N S 445 XYP C4 C N R 446 XYP C5 C N N 447 XYP O2 O N N 448 XYP O3 O N N 449 XYP O4 O N N 450 XYP O5 O N N 451 XYP HO1 H N N 452 XYP H1 H N N 453 XYP H2 H N N 454 XYP H3 H N N 455 XYP H4 H N N 456 XYP H51 H N N 457 XYP H52 H N N 458 XYP HO2 H N N 459 XYP HO3 H N N 460 XYP HO4 H N N 461 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BNG C1 C2 sing N N 70 BNG C1 O1 sing N N 71 BNG C1 O5 sing N N 72 BNG C1 H1 sing N N 73 BNG C2 C3 sing N N 74 BNG C2 O2 sing N N 75 BNG C2 H2 sing N N 76 BNG C3 C4 sing N N 77 BNG C3 O3 sing N N 78 BNG C3 H3 sing N N 79 BNG C4 C5 sing N N 80 BNG C4 O4 sing N N 81 BNG C4 H4 sing N N 82 BNG C5 C6 sing N N 83 BNG C5 O5 sing N N 84 BNG C5 H5 sing N N 85 BNG C6 O6 sing N N 86 BNG C6 H61 sing N N 87 BNG C6 H62 sing N N 88 BNG "C1'" "C2'" sing N N 89 BNG "C1'" O1 sing N N 90 BNG "C1'" "H1'1" sing N N 91 BNG "C1'" "H1'2" sing N N 92 BNG "C2'" "C3'" sing N N 93 BNG "C2'" "H2'1" sing N N 94 BNG "C2'" "H2'2" sing N N 95 BNG "C3'" "C4'" sing N N 96 BNG "C3'" "H3'1" sing N N 97 BNG "C3'" "H3'2" sing N N 98 BNG "C4'" "C5'" sing N N 99 BNG "C4'" "H4'1" sing N N 100 BNG "C4'" "H4'2" sing N N 101 BNG "C5'" "C6'" sing N N 102 BNG "C5'" "H5'1" sing N N 103 BNG "C5'" "H5'2" sing N N 104 BNG "C6'" "C7'" sing N N 105 BNG "C6'" "H6'1" sing N N 106 BNG "C6'" "H6'2" sing N N 107 BNG "C7'" "C8'" sing N N 108 BNG "C7'" "H7'1" sing N N 109 BNG "C7'" "H7'2" sing N N 110 BNG "C8'" "C9'" sing N N 111 BNG "C8'" "H8'1" sing N N 112 BNG "C8'" "H8'2" sing N N 113 BNG "C9'" "H9'1" sing N N 114 BNG "C9'" "H9'2" sing N N 115 BNG "C9'" "H9'3" sing N N 116 BNG O2 HO2 sing N N 117 BNG O3 HO3 sing N N 118 BNG O4 HO4 sing N N 119 BNG O6 HO6 sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 GLN N CA sing N N 134 GLN N H sing N N 135 GLN N H2 sing N N 136 GLN CA C sing N N 137 GLN CA CB sing N N 138 GLN CA HA sing N N 139 GLN C O doub N N 140 GLN C OXT sing N N 141 GLN CB CG sing N N 142 GLN CB HB2 sing N N 143 GLN CB HB3 sing N N 144 GLN CG CD sing N N 145 GLN CG HG2 sing N N 146 GLN CG HG3 sing N N 147 GLN CD OE1 doub N N 148 GLN CD NE2 sing N N 149 GLN NE2 HE21 sing N N 150 GLN NE2 HE22 sing N N 151 GLN OXT HXT sing N N 152 GLU N CA sing N N 153 GLU N H sing N N 154 GLU N H2 sing N N 155 GLU CA C sing N N 156 GLU CA CB sing N N 157 GLU CA HA sing N N 158 GLU C O doub N N 159 GLU C OXT sing N N 160 GLU CB CG sing N N 161 GLU CB HB2 sing N N 162 GLU CB HB3 sing N N 163 GLU CG CD sing N N 164 GLU CG HG2 sing N N 165 GLU CG HG3 sing N N 166 GLU CD OE1 doub N N 167 GLU CD OE2 sing N N 168 GLU OE2 HE2 sing N N 169 GLU OXT HXT sing N N 170 GLY N CA sing N N 171 GLY N H sing N N 172 GLY N H2 sing N N 173 GLY CA C sing N N 174 GLY CA HA2 sing N N 175 GLY CA HA3 sing N N 176 GLY C O doub N N 177 GLY C OXT sing N N 178 GLY OXT HXT sing N N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TRP N CA sing N N 357 TRP N H sing N N 358 TRP N H2 sing N N 359 TRP CA C sing N N 360 TRP CA CB sing N N 361 TRP CA HA sing N N 362 TRP C O doub N N 363 TRP C OXT sing N N 364 TRP CB CG sing N N 365 TRP CB HB2 sing N N 366 TRP CB HB3 sing N N 367 TRP CG CD1 doub Y N 368 TRP CG CD2 sing Y N 369 TRP CD1 NE1 sing Y N 370 TRP CD1 HD1 sing N N 371 TRP CD2 CE2 doub Y N 372 TRP CD2 CE3 sing Y N 373 TRP NE1 CE2 sing Y N 374 TRP NE1 HE1 sing N N 375 TRP CE2 CZ2 sing Y N 376 TRP CE3 CZ3 doub Y N 377 TRP CE3 HE3 sing N N 378 TRP CZ2 CH2 doub Y N 379 TRP CZ2 HZ2 sing N N 380 TRP CZ3 CH2 sing Y N 381 TRP CZ3 HZ3 sing N N 382 TRP CH2 HH2 sing N N 383 TRP OXT HXT sing N N 384 TYR N CA sing N N 385 TYR N H sing N N 386 TYR N H2 sing N N 387 TYR CA C sing N N 388 TYR CA CB sing N N 389 TYR CA HA sing N N 390 TYR C O doub N N 391 TYR C OXT sing N N 392 TYR CB CG sing N N 393 TYR CB HB2 sing N N 394 TYR CB HB3 sing N N 395 TYR CG CD1 doub Y N 396 TYR CG CD2 sing Y N 397 TYR CD1 CE1 sing Y N 398 TYR CD1 HD1 sing N N 399 TYR CD2 CE2 doub Y N 400 TYR CD2 HD2 sing N N 401 TYR CE1 CZ doub Y N 402 TYR CE1 HE1 sing N N 403 TYR CE2 CZ sing Y N 404 TYR CE2 HE2 sing N N 405 TYR CZ OH sing N N 406 TYR OH HH sing N N 407 TYR OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 XYP O1 C1 sing N N 427 XYP O1 HO1 sing N N 428 XYP C1 C2 sing N N 429 XYP C1 O5 sing N N 430 XYP C1 H1 sing N N 431 XYP C2 C3 sing N N 432 XYP C2 O2 sing N N 433 XYP C2 H2 sing N N 434 XYP C3 C4 sing N N 435 XYP C3 O3 sing N N 436 XYP C3 H3 sing N N 437 XYP C4 C5 sing N N 438 XYP C4 O4 sing N N 439 XYP C4 H4 sing N N 440 XYP C5 O5 sing N N 441 XYP C5 H51 sing N N 442 XYP C5 H52 sing N N 443 XYP O2 HO2 sing N N 444 XYP O3 HO3 sing N N 445 XYP O4 HO4 sing N N 446 # _atom_sites.entry_id 4GBY _atom_sites.fract_transf_matrix[1][1] 0.010494 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010494 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005946 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_