HEADER ANTIMICROBIAL PROTEIN 29-JUL-12 4GC1 TITLE CRYSTAL STRUCTURE OF THE BACTERIOCIN LLPA FROM PSEUDOMONAS SP. IN TITLE 2 COMPLEX WITH MAN ALPHA(1-2)MAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTIDACIN L1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. BW11M1; SOURCE 3 ORGANISM_TAXID: 216978; SOURCE 4 STRAIN: PSEUDOMONAS PUTIDA BW11M1; SOURCE 5 GENE: LLPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC18 KEYWDS MONOCOT-LECTIN FOLD, BACTERIOCIN, MANNOSE BASED CARHYDRATES, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO,R.LORIS REVDAT 4 13-SEP-23 4GC1 1 HETSYN REVDAT 3 29-JUL-20 4GC1 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 15-NOV-17 4GC1 1 REMARK REVDAT 1 10-APR-13 4GC1 0 JRNL AUTH M.G.GHEQUIRE,A.GARCIA-PINO,E.K.LEBBE,S.SPAEPEN,R.LORIS, JRNL AUTH 2 R.DE MOT JRNL TITL STRUCTURAL DETERMINANTS FOR ACTIVITY AND SPECIFICITY OF THE JRNL TITL 2 BACTERIAL TOXIN LLPA. JRNL REF PLOS PATHOG. V. 9 03199 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23468636 JRNL DOI 10.1371/JOURNAL.PPAT.1003199 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7002 - 5.3152 0.99 2891 147 0.1346 0.1772 REMARK 3 2 5.3152 - 4.2326 1.00 2737 150 0.1101 0.1432 REMARK 3 3 4.2326 - 3.7016 1.00 2769 138 0.1242 0.1488 REMARK 3 4 3.7016 - 3.3650 1.00 2713 126 0.1436 0.1731 REMARK 3 5 3.3650 - 3.1248 1.00 2683 147 0.1638 0.2502 REMARK 3 6 3.1248 - 2.9412 1.00 2730 135 0.1841 0.2151 REMARK 3 7 2.9412 - 2.7944 1.00 2653 147 0.1879 0.2288 REMARK 3 8 2.7944 - 2.6730 1.00 2673 148 0.1901 0.2484 REMARK 3 9 2.6730 - 2.5703 1.00 2642 153 0.1848 0.2202 REMARK 3 10 2.5703 - 2.4818 1.00 2654 140 0.1905 0.2541 REMARK 3 11 2.4818 - 2.4044 1.00 2628 149 0.1982 0.2447 REMARK 3 12 2.4044 - 2.3357 1.00 2681 141 0.2055 0.2529 REMARK 3 13 2.3357 - 2.2743 1.00 2619 128 0.2053 0.2105 REMARK 3 14 2.2743 - 2.2189 1.00 2656 151 0.2124 0.2820 REMARK 3 15 2.2189 - 2.1686 1.00 2644 149 0.2208 0.2929 REMARK 3 16 2.1686 - 2.1225 1.00 2583 139 0.2260 0.2829 REMARK 3 17 2.1225 - 2.0801 1.00 2672 145 0.2362 0.2792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4310 REMARK 3 ANGLE : 1.256 5915 REMARK 3 CHIRALITY : 0.097 660 REMARK 3 PLANARITY : 0.006 772 REMARK 3 DIHEDRAL : 13.644 1470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.9010 9.2841 -0.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.2935 REMARK 3 T33: 0.3104 T12: 0.0159 REMARK 3 T13: 0.0804 T23: 0.0987 REMARK 3 L TENSOR REMARK 3 L11: 5.5809 L22: 6.4060 REMARK 3 L33: 6.8624 L12: -0.1913 REMARK 3 L13: 0.5815 L23: 2.8092 REMARK 3 S TENSOR REMARK 3 S11: 0.1458 S12: 0.5822 S13: -0.1679 REMARK 3 S21: -0.1961 S22: -0.1945 S23: -0.6557 REMARK 3 S31: 0.0722 S32: 0.3205 S33: 0.0526 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2783 12.0894 15.7756 REMARK 3 T TENSOR REMARK 3 T11: 0.5543 T22: 0.3332 REMARK 3 T33: 0.2827 T12: -0.0616 REMARK 3 T13: -0.0723 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 1.5087 L22: 2.1411 REMARK 3 L33: 2.4384 L12: 0.0306 REMARK 3 L13: 0.1781 L23: -1.3044 REMARK 3 S TENSOR REMARK 3 S11: 0.1804 S12: -0.2773 S13: -0.1619 REMARK 3 S21: 1.2443 S22: -0.2226 S23: -0.3047 REMARK 3 S31: 0.3979 S32: 0.4062 S33: 0.1081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5325 -1.4787 10.3007 REMARK 3 T TENSOR REMARK 3 T11: 0.6700 T22: 0.2182 REMARK 3 T33: 0.4089 T12: 0.0430 REMARK 3 T13: 0.0675 T23: 0.0815 REMARK 3 L TENSOR REMARK 3 L11: 1.4793 L22: 2.6659 REMARK 3 L33: 2.6863 L12: 0.8544 REMARK 3 L13: 0.9645 L23: -1.5498 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: -0.2080 S13: -0.4954 REMARK 3 S21: 0.6220 S22: -0.1902 S23: -0.1115 REMARK 3 S31: 0.6420 S32: 0.2819 S33: 0.1036 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0066 6.1132 4.8890 REMARK 3 T TENSOR REMARK 3 T11: 0.3929 T22: 0.1943 REMARK 3 T33: 0.3277 T12: -0.0130 REMARK 3 T13: 0.0763 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 1.6751 L22: 2.2003 REMARK 3 L33: 1.5318 L12: 0.6562 REMARK 3 L13: 0.0492 L23: 0.9573 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.1511 S13: -0.1588 REMARK 3 S21: 0.3364 S22: -0.0851 S23: 0.2018 REMARK 3 S31: 0.2626 S32: 0.0864 S33: -0.0294 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3886 32.2465 -0.2408 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.2076 REMARK 3 T33: 0.3092 T12: -0.0397 REMARK 3 T13: 0.0280 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.6055 L22: 2.5013 REMARK 3 L33: 0.9660 L12: 0.1191 REMARK 3 L13: -0.4572 L23: -0.2639 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.0582 S13: -0.0127 REMARK 3 S21: 0.1284 S22: -0.0731 S23: 0.3748 REMARK 3 S31: -0.0232 S32: -0.0224 S33: 0.0257 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4352 37.8660 -9.4071 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.1450 REMARK 3 T33: 0.2384 T12: -0.0079 REMARK 3 T13: -0.0315 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 4.1710 L22: 5.5160 REMARK 3 L33: 4.3848 L12: 0.8985 REMARK 3 L13: 0.1161 L23: 0.7115 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.2679 S13: 0.0301 REMARK 3 S21: -0.6003 S22: -0.0439 S23: 0.3742 REMARK 3 S31: -0.2730 S32: -0.1191 S33: 0.0407 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8116 21.0851 6.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2036 REMARK 3 T33: 0.4221 T12: -0.0392 REMARK 3 T13: 0.0974 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 1.6635 L22: 2.8134 REMARK 3 L33: 2.4500 L12: 0.8946 REMARK 3 L13: -0.2410 L23: -1.0717 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: -0.0834 S13: 0.0514 REMARK 3 S21: 0.1941 S22: -0.0969 S23: 0.6863 REMARK 3 S31: 0.1533 S32: -0.2681 S33: 0.1656 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3577 -15.3920 4.2632 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 1.2152 REMARK 3 T33: 0.4174 T12: 0.0808 REMARK 3 T13: 0.0992 T23: 0.2892 REMARK 3 L TENSOR REMARK 3 L11: 1.2967 L22: 0.0809 REMARK 3 L33: 0.4823 L12: -0.1695 REMARK 3 L13: -0.3593 L23: -0.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: 0.5632 S13: -0.0442 REMARK 3 S21: -0.1539 S22: 0.2140 S23: 0.2489 REMARK 3 S31: 0.0310 S32: -1.2988 S33: -0.0832 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5895 -13.4064 2.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.1874 REMARK 3 T33: 0.1742 T12: 0.0573 REMARK 3 T13: 0.0559 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.6773 L22: 2.1899 REMARK 3 L33: 1.3798 L12: 0.3454 REMARK 3 L13: -0.1342 L23: -0.8252 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: -0.0718 S13: 0.1869 REMARK 3 S21: -0.0624 S22: 0.1176 S23: -0.0606 REMARK 3 S31: -0.1815 S32: -0.1750 S33: -0.2041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8081 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48078 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : 0.40200 REMARK 200 FOR SHELL : 2.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M7H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE PH 6.5, 1.3 M SODIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 74.73700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.73700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 70 REMARK 465 ARG B 71 REMARK 465 ASN B 72 REMARK 465 PHE B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 51 CG OD1 ND2 REMARK 470 ARG A 71 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 74 CB CG CD CE NZ REMARK 470 LYS A 244 CE NZ REMARK 470 ARG A 257 CZ NH1 NH2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 PHE A 276 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 24 OG REMARK 470 ALA B 25 CB REMARK 470 ASP B 43 OD1 OD2 REMARK 470 VAL B 57 CG1 CG2 REMARK 470 ALA B 58 CB REMARK 470 GLU B 60 CD OE1 OE2 REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 ILE B 68 CD1 REMARK 470 LYS B 73 CB CG CD CE NZ REMARK 470 LYS B 74 CB CG CD CE NZ REMARK 470 ALA B 75 CB REMARK 470 TYR B 90 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 90 OH REMARK 470 ARG B 93 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 265 CG OD1 OD2 REMARK 470 GLN B 266 CD OE1 NE2 REMARK 470 LYS B 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 83 ND2 ASN B 100 1.80 REMARK 500 O HOH B 490 O HOH B 494 1.83 REMARK 500 OE1 GLU B 154 O HOH B 429 2.04 REMARK 500 NH1 ARG B 4 O HOH B 514 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 8 CD PRO B 8 N -0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 264 C - N - CA ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 83 -71.88 61.55 REMARK 500 ASP A 270 47.56 -82.66 REMARK 500 GLN B 34 -8.71 68.49 REMARK 500 GLN B 82 71.29 -156.59 REMARK 500 TYR B 83 -51.90 66.18 REMARK 500 ARG B 93 45.83 37.79 REMARK 500 PHE B 103 161.15 -48.56 REMARK 500 PRO B 264 -59.24 -22.50 REMARK 500 GLN B 266 -54.55 -124.28 REMARK 500 ASP B 270 48.56 -82.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M7H RELATED DB: PDB REMARK 900 RELATED ID: 3M7J RELATED DB: PDB REMARK 900 FREE LLPA REMARK 900 RELATED ID: 4GC2 RELATED DB: PDB DBREF 4GC1 A 1 276 UNP Q8GEJ9 Q8GEJ9_9PSED 1 276 DBREF 4GC1 B 1 276 UNP Q8GEJ9 Q8GEJ9_9PSED 1 276 SEQRES 1 A 276 MET ALA GLY ARG THR ARG ILE PRO PHE ASN GLY VAL GLY SEQRES 2 A 276 THR SER VAL LEU PRO ALA TYR GLN THR LEU SER ALA GLY SEQRES 3 A 276 GLN TYR LEU LEU SER PRO ASN GLN ARG PHE LYS LEU LEU SEQRES 4 A 276 LEU GLN GLY ASP GLY ASN LEU VAL ILE GLN ASP ASN GLY SEQRES 5 A 276 ALA THR VAL TRP VAL ALA ASN GLU GLN GLN PRO PHE SER SEQRES 6 A 276 SER THR ILE PRO LEU ARG ASN LYS LYS ALA PRO LEU ALA SEQRES 7 A 276 PHE TYR VAL GLN TYR GLY ALA PHE LEU ASP ASP TYR SER SEQRES 8 A 276 ARG ARG ARG VAL TRP LEU THR ASP ASN SER THR PHE THR SEQRES 9 A 276 SER ASN ASP GLN TRP ASN ARG THR HIS LEU VAL LEU GLN SEQRES 10 A 276 ASP ASP GLY ASN ILE VAL LEU VAL ASP SER LEU ALA LEU SEQRES 11 A 276 TRP ASN GLY THR PRO ALA ILE PRO LEU VAL PRO GLY ALA SEQRES 12 A 276 ILE ASP SER LEU LEU LEU ALA PRO GLY SER GLU LEU VAL SEQRES 13 A 276 GLN GLY VAL VAL TYR GLY ALA GLY ALA SER LYS LEU VAL SEQRES 14 A 276 PHE GLN GLY ASP GLY ASN LEU VAL ALA TYR GLY PRO ASN SEQRES 15 A 276 GLY ALA ALA THR TRP ASN ALA GLY THR GLN GLY LYS GLY SEQRES 16 A 276 ALA VAL ARG ALA VAL PHE GLN GLY ASP GLY ASN LEU VAL SEQRES 17 A 276 VAL TYR GLY ALA GLY ASN ALA VAL LEU TRP HIS SER HIS SEQRES 18 A 276 THR GLY GLY HIS ALA SER ALA VAL LEU ARG LEU GLN ALA SEQRES 19 A 276 ASN GLY SER ILE ALA ILE LEU ASP GLU LYS PRO VAL TRP SEQRES 20 A 276 ALA ARG PHE GLY PHE GLN PRO THR TYR ARG HIS ILE ARG SEQRES 21 A 276 LYS ILE ASN PRO ASP GLN LYS PRO ILE ASP ILE TRP THR SEQRES 22 A 276 TRP HIS PHE SEQRES 1 B 276 MET ALA GLY ARG THR ARG ILE PRO PHE ASN GLY VAL GLY SEQRES 2 B 276 THR SER VAL LEU PRO ALA TYR GLN THR LEU SER ALA GLY SEQRES 3 B 276 GLN TYR LEU LEU SER PRO ASN GLN ARG PHE LYS LEU LEU SEQRES 4 B 276 LEU GLN GLY ASP GLY ASN LEU VAL ILE GLN ASP ASN GLY SEQRES 5 B 276 ALA THR VAL TRP VAL ALA ASN GLU GLN GLN PRO PHE SER SEQRES 6 B 276 SER THR ILE PRO LEU ARG ASN LYS LYS ALA PRO LEU ALA SEQRES 7 B 276 PHE TYR VAL GLN TYR GLY ALA PHE LEU ASP ASP TYR SER SEQRES 8 B 276 ARG ARG ARG VAL TRP LEU THR ASP ASN SER THR PHE THR SEQRES 9 B 276 SER ASN ASP GLN TRP ASN ARG THR HIS LEU VAL LEU GLN SEQRES 10 B 276 ASP ASP GLY ASN ILE VAL LEU VAL ASP SER LEU ALA LEU SEQRES 11 B 276 TRP ASN GLY THR PRO ALA ILE PRO LEU VAL PRO GLY ALA SEQRES 12 B 276 ILE ASP SER LEU LEU LEU ALA PRO GLY SER GLU LEU VAL SEQRES 13 B 276 GLN GLY VAL VAL TYR GLY ALA GLY ALA SER LYS LEU VAL SEQRES 14 B 276 PHE GLN GLY ASP GLY ASN LEU VAL ALA TYR GLY PRO ASN SEQRES 15 B 276 GLY ALA ALA THR TRP ASN ALA GLY THR GLN GLY LYS GLY SEQRES 16 B 276 ALA VAL ARG ALA VAL PHE GLN GLY ASP GLY ASN LEU VAL SEQRES 17 B 276 VAL TYR GLY ALA GLY ASN ALA VAL LEU TRP HIS SER HIS SEQRES 18 B 276 THR GLY GLY HIS ALA SER ALA VAL LEU ARG LEU GLN ALA SEQRES 19 B 276 ASN GLY SER ILE ALA ILE LEU ASP GLU LYS PRO VAL TRP SEQRES 20 B 276 ALA ARG PHE GLY PHE GLN PRO THR TYR ARG HIS ILE ARG SEQRES 21 B 276 LYS ILE ASN PRO ASP GLN LYS PRO ILE ASP ILE TRP THR SEQRES 22 B 276 TRP HIS PHE HET MAN C 1 12 HET MAN C 2 11 HET MAN D 1 12 HET MAN D 2 11 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 MAN 4(C6 H12 O6) FORMUL 5 HOH *247(H2 O) HELIX 1 1 TYR A 90 ARG A 92 5 3 HELIX 2 2 ASP A 107 ARG A 111 1 5 HELIX 3 3 ALA A 212 ASN A 214 5 3 HELIX 4 4 TYR B 90 ARG B 93 5 4 HELIX 5 5 ASP B 107 ARG B 111 1 5 HELIX 6 6 ALA B 212 ASN B 214 5 3 SHEET 1 A 2 ILE A 7 PRO A 8 0 SHEET 2 A 2 GLN A 21 THR A 22 1 O THR A 22 N ILE A 7 SHEET 1 B 6 VAL A 16 LEU A 17 0 SHEET 2 B 6 THR A 112 LEU A 116 -1 O LEU A 114 N LEU A 17 SHEET 3 B 6 ILE A 122 ASN A 132 -1 O VAL A 123 N VAL A 115 SHEET 4 B 6 ILE A 238 ALA A 248 -1 O VAL A 246 N LEU A 124 SHEET 5 B 6 VAL A 229 LEU A 232 -1 N ARG A 231 O ALA A 239 SHEET 6 B 6 LEU A 147 LEU A 149 -1 N LEU A 149 O LEU A 230 SHEET 1 C 4 TYR A 28 LEU A 30 0 SHEET 2 C 4 PHE A 36 LEU A 40 -1 O LEU A 38 N LEU A 29 SHEET 3 C 4 LEU A 46 ASP A 50 -1 O VAL A 47 N LEU A 39 SHEET 4 C 4 ALA A 53 VAL A 57 -1 O ALA A 53 N ASP A 50 SHEET 1 D 4 SER A 65 PRO A 69 0 SHEET 2 D 4 ARG A 94 THR A 98 -1 O LEU A 97 N SER A 66 SHEET 3 D 4 ALA A 85 ASP A 89 -1 N LEU A 87 O TRP A 96 SHEET 4 D 4 ALA A 78 VAL A 81 -1 N ALA A 78 O ASP A 88 SHEET 1 E 4 SER A 153 GLU A 154 0 SHEET 2 E 4 ARG A 198 PHE A 201 -1 O PHE A 201 N SER A 153 SHEET 3 E 4 LEU A 207 TYR A 210 -1 O TYR A 210 N ARG A 198 SHEET 4 E 4 VAL A 216 HIS A 219 -1 O TRP A 218 N VAL A 209 SHEET 1 F 4 VAL A 160 ALA A 163 0 SHEET 2 F 4 SER A 166 PHE A 170 -1 O LEU A 168 N TYR A 161 SHEET 3 F 4 LEU A 176 TYR A 179 -1 O TYR A 179 N LYS A 167 SHEET 4 F 4 ALA A 185 ASN A 188 -1 O TRP A 187 N ALA A 178 SHEET 1 G 2 ARG A 257 ILE A 262 0 SHEET 2 G 2 PRO A 268 HIS A 275 -1 O HIS A 275 N ARG A 257 SHEET 1 H 2 ILE B 7 PRO B 8 0 SHEET 2 H 2 GLN B 21 THR B 22 1 O THR B 22 N ILE B 7 SHEET 1 I 6 VAL B 16 LEU B 17 0 SHEET 2 I 6 THR B 112 LEU B 116 -1 O LEU B 114 N LEU B 17 SHEET 3 I 6 ILE B 122 ASN B 132 -1 O VAL B 125 N HIS B 113 SHEET 4 I 6 ILE B 238 ALA B 248 -1 O LYS B 244 N ASP B 126 SHEET 5 I 6 VAL B 229 LEU B 232 -1 N ARG B 231 O ALA B 239 SHEET 6 I 6 LEU B 147 LEU B 149 -1 N LEU B 147 O LEU B 232 SHEET 1 J 4 TYR B 28 LEU B 30 0 SHEET 2 J 4 PHE B 36 LEU B 40 -1 O LEU B 38 N LEU B 29 SHEET 3 J 4 LEU B 46 ASP B 50 -1 O VAL B 47 N LEU B 39 SHEET 4 J 4 ALA B 53 VAL B 57 -1 O ALA B 53 N ASP B 50 SHEET 1 K 4 SER B 65 ILE B 68 0 SHEET 2 K 4 ARG B 94 THR B 98 -1 O LEU B 97 N SER B 66 SHEET 3 K 4 ALA B 85 ASP B 89 -1 N LEU B 87 O TRP B 96 SHEET 4 K 4 ALA B 78 VAL B 81 -1 N TYR B 80 O PHE B 86 SHEET 1 L 4 SER B 153 GLU B 154 0 SHEET 2 L 4 ARG B 198 PHE B 201 -1 O PHE B 201 N SER B 153 SHEET 3 L 4 LEU B 207 TYR B 210 -1 O TYR B 210 N ARG B 198 SHEET 4 L 4 VAL B 216 HIS B 219 -1 O LEU B 217 N VAL B 209 SHEET 1 M 4 TYR B 161 ALA B 163 0 SHEET 2 M 4 SER B 166 PHE B 170 -1 O LEU B 168 N TYR B 161 SHEET 3 M 4 LEU B 176 TYR B 179 -1 O TYR B 179 N LYS B 167 SHEET 4 M 4 ALA B 185 ASN B 188 -1 O THR B 186 N ALA B 178 SHEET 1 N 2 HIS B 258 ILE B 262 0 SHEET 2 N 2 PRO B 268 TRP B 274 -1 O ILE B 271 N LYS B 261 LINK O2 MAN C 1 C1 MAN C 2 1555 1555 1.44 LINK O2 MAN D 1 C1 MAN D 2 1555 1555 1.43 CRYST1 149.474 153.140 33.956 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029450 0.00000