HEADER TRANSFERASE 30-JUL-12 4GC9 TITLE CRYSTAL STRUCTURE OF MURINE TFB1M IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLADENOSINE TRANSFERASE 1, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOCHONDRIAL 12S RRNA DIMETHYLASE 1, MITOCHONDRIAL COMPND 5 TRANSCRIPTION FACTOR B1, MTTFB1, S-ADENOSYLMETHIONINE-6-N', N'- COMPND 6 ADENOSYL(RRNA) DIMETHYLTRANSFERASE 1; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TFB1M; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS RIL (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS METHYLTRANSFERASE FOLD, RRNA METHYLTRANSFERASE, S-ADENOSYL-L- KEYWDS 2 METHIONINE, METHYLATION, MITOCHONDRIA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.GUJA,E.YAKUBOVSKAYA,H.SHI,E.MEJIA,E.HAMBARDJIEVA,K.VENKATARAMAN, AUTHOR 2 A.W.KARZAI,M.GARCIA-DIAZ REVDAT 5 20-NOV-24 4GC9 1 REMARK REVDAT 4 06-DEC-23 4GC9 1 REMARK REVDAT 3 13-SEP-23 4GC9 1 REMARK LINK REVDAT 2 02-OCT-13 4GC9 1 JRNL REVDAT 1 10-JUL-13 4GC9 0 JRNL AUTH K.E.GUJA,K.VENKATARAMAN,E.YAKUBOVSKAYA,H.SHI,E.MEJIA, JRNL AUTH 2 E.HAMBARDJIEVA,A.W.KARZAI,M.GARCIA-DIAZ JRNL TITL STRUCTURAL BASIS FOR S-ADENOSYLMETHIONINE BINDING AND JRNL TITL 2 METHYLTRANSFERASE ACTIVITY BY MITOCHONDRIAL TRANSCRIPTION JRNL TITL 3 FACTOR B1. JRNL REF NUCLEIC ACIDS RES. V. 41 7947 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23804760 JRNL DOI 10.1093/NAR/GKT547 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 3 NUMBER OF REFLECTIONS : 23216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4670 - 4.2032 0.90 3490 159 0.1758 0.2171 REMARK 3 2 4.2032 - 3.3372 0.99 3618 192 0.1674 0.1867 REMARK 3 3 3.3372 - 2.9156 0.99 3579 208 0.2300 0.2462 REMARK 3 4 2.9156 - 2.6492 0.99 3529 202 0.2575 0.2863 REMARK 3 5 2.6492 - 2.4593 0.83 2963 178 0.2616 0.2783 REMARK 3 6 2.4593 - 2.3144 0.65 2328 121 0.2531 0.2949 REMARK 3 7 2.3144 - 2.1985 0.46 1650 92 0.2326 0.2634 REMARK 3 8 2.1985 - 2.1030 0.24 870 37 0.1965 0.1794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2624 REMARK 3 ANGLE : 0.683 3577 REMARK 3 CHIRALITY : 0.047 415 REMARK 3 PLANARITY : 0.003 456 REMARK 3 DIHEDRAL : 12.770 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3517 -59.6021 -8.9854 REMARK 3 T TENSOR REMARK 3 T11: 0.5792 T22: 0.4067 REMARK 3 T33: 0.4795 T12: -0.2550 REMARK 3 T13: 0.0687 T23: -0.1410 REMARK 3 L TENSOR REMARK 3 L11: 0.5721 L22: 0.3531 REMARK 3 L33: 0.1878 L12: -0.3203 REMARK 3 L13: 0.1878 L23: 0.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: 0.3639 S13: 0.0705 REMARK 3 S21: -0.0571 S22: 0.4054 S23: -0.1703 REMARK 3 S31: -0.0400 S32: 0.4626 S33: -0.0074 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9970 -24.4571 -21.9196 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.2097 REMARK 3 T33: 0.1166 T12: -0.1355 REMARK 3 T13: 0.0291 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.1648 L22: 1.0482 REMARK 3 L33: 2.4741 L12: 0.2549 REMARK 3 L13: 0.0642 L23: -0.1667 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.2182 S13: -0.0132 REMARK 3 S21: 0.2419 S22: 0.1222 S23: 0.1532 REMARK 3 S31: 0.1510 S32: -0.2282 S33: -0.0378 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3259 -25.5990 -46.5852 REMARK 3 T TENSOR REMARK 3 T11: -0.3176 T22: -0.4272 REMARK 3 T33: -0.0131 T12: -0.5345 REMARK 3 T13: 0.2557 T23: 0.3127 REMARK 3 L TENSOR REMARK 3 L11: 1.7154 L22: 0.8115 REMARK 3 L33: 1.5764 L12: -0.2202 REMARK 3 L13: -0.2466 L23: 0.0979 REMARK 3 S TENSOR REMARK 3 S11: 0.8248 S12: -0.0431 S13: -0.1431 REMARK 3 S21: -0.7781 S22: -0.6614 S23: 0.1412 REMARK 3 S31: 0.9653 S32: 0.9442 S33: -0.0166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.103 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.9 M SODIUM ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.85500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.85500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.84000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.85500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.85000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.84000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.85500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -47.70000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -101.68000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 GLN A 328 REMARK 465 LYS A 329 REMARK 465 LYS A 330 REMARK 465 SER A 331 REMARK 465 LYS A 332 REMARK 465 GLY A 333 REMARK 465 GLN A 334 REMARK 465 GLU A 335 REMARK 465 LYS A 336 REMARK 465 ASP A 337 REMARK 465 GLY A 338 REMARK 465 ASP A 339 REMARK 465 PRO A 340 REMARK 465 GLU A 341 REMARK 465 SER A 342 REMARK 465 CYS A 343 REMARK 465 GLY A 344 REMARK 465 PHE A 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 10 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 18 CD1 REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 23 CD CE NZ REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 ARG A 42 NE CZ NH1 NH2 REMARK 470 ASN A 77 CG OD1 ND2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 ARG A 183 CZ NH1 NH2 REMARK 470 LYS A 191 CD CE NZ REMARK 470 LYS A 220 CE NZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 291 NE CZ NH1 NH2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 85 O2' SAM A 401 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 510 O HOH A 628 8444 2.00 REMARK 500 O HOH A 505 O HOH A 629 8444 2.05 REMARK 500 O HOH A 505 O HOH A 614 8444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 135 42.18 -82.30 REMARK 500 ASP A 162 -161.83 -128.26 REMARK 500 SER A 194 -155.15 -147.44 REMARK 500 LYS A 239 66.21 -113.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GC5 RELATED DB: PDB REMARK 900 LIGAND-FREE STRUCTURE OF TFB1M DBREF 4GC9 A 1 345 UNP Q8JZM0 TFB1M_MOUSE 1 345 SEQRES 1 A 345 MSE ALA ALA SER GLY LYS LEU GLY THR PHE ARG LEU PRO SEQRES 2 A 345 PRO LEU PRO THR ILE ARG GLU ILE ILE LYS LEU PHE GLY SEQRES 3 A 345 LEU ARG ALA VAL LYS GLN LEU SER GLN ASN PHE LEU LEU SEQRES 4 A 345 ASP LEU ARG LEU THR ASP LYS ILE VAL ARG LYS ALA GLY SEQRES 5 A 345 SER LEU ALA ASP VAL TYR VAL TYR GLU VAL GLY PRO GLY SEQRES 6 A 345 PRO GLY GLY ILE THR ARG SER ILE LEU ASN ALA ASN VAL SEQRES 7 A 345 ALA GLU LEU LEU VAL VAL GLU LYS ASP THR ARG PHE ILE SEQRES 8 A 345 PRO GLY LEU GLN MSE LEU SER ASP ALA ALA PRO GLY LYS SEQRES 9 A 345 LEU ARG ILE VAL HIS GLY ASP VAL LEU THR TYR LYS ILE SEQRES 10 A 345 GLU LYS ALA PHE PRO GLY ASN ILE ARG ARG GLN TRP GLU SEQRES 11 A 345 ASP ASP PRO PRO ASN VAL HIS ILE ILE GLY ASN LEU PRO SEQRES 12 A 345 PHE SER VAL SER THR PRO LEU ILE ILE LYS TRP LEU GLU SEQRES 13 A 345 ASN ILE SER LEU LYS ASP GLY PRO PHE VAL TYR GLY ARG SEQRES 14 A 345 THR LYS MSE THR LEU THR PHE GLN LYS GLU VAL ALA GLU SEQRES 15 A 345 ARG LEU VAL ALA THR THR GLY SER LYS GLN HIS SER ARG SEQRES 16 A 345 LEU SER ILE MSE ALA GLN TYR LEU CYS ASN VAL GLU HIS SEQRES 17 A 345 LEU PHE THR ILE PRO GLY LYS ALA PHE VAL PRO LYS PRO SEQRES 18 A 345 LYS VAL ASP VAL GLY VAL VAL HIS LEU THR PRO LEU ILE SEQRES 19 A 345 GLU PRO LYS ILE LYS GLN PRO PHE LYS LEU VAL GLU LYS SEQRES 20 A 345 VAL VAL GLN ASN ALA PHE GLN PHE ARG ARG LYS TYR CYS SEQRES 21 A 345 HIS ARG GLY LEU GLY MSE LEU PHE PRO GLU ALA GLN ARG SEQRES 22 A 345 LEU GLU SER THR GLY ARG LEU LEU GLN LEU ALA ASP ILE SEQRES 23 A 345 ASP PRO THR LEU ARG PRO THR HIS LEU SER LEU MSE HIS SEQRES 24 A 345 PHE LYS SER LEU CYS ASP VAL TYR ARG LYS MSE CYS ASP SEQRES 25 A 345 GLU ASP PRO GLN LEU PHE THR TYR ASN PHE ARG GLU GLU SEQRES 26 A 345 LEU LYS GLN LYS LYS SER LYS GLY GLN GLU LYS ASP GLY SEQRES 27 A 345 ASP PRO GLU SER CYS GLY PHE MODRES 4GC9 MSE A 96 MET SELENOMETHIONINE MODRES 4GC9 MSE A 172 MET SELENOMETHIONINE MODRES 4GC9 MSE A 199 MET SELENOMETHIONINE MODRES 4GC9 MSE A 266 MET SELENOMETHIONINE MODRES 4GC9 MSE A 298 MET SELENOMETHIONINE MODRES 4GC9 MSE A 310 MET SELENOMETHIONINE HET MSE A 96 13 HET MSE A 172 8 HET MSE A 199 8 HET MSE A 266 8 HET MSE A 298 8 HET MSE A 310 8 HET SAM A 401 27 HET ACT A 402 4 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *149(H2 O) HELIX 1 1 THR A 17 LEU A 33 1 17 HELIX 2 2 ASP A 40 ALA A 51 1 12 HELIX 3 3 GLY A 67 ASN A 75 1 9 HELIX 4 4 PHE A 90 ALA A 101 1 12 HELIX 5 5 PRO A 122 ARG A 126 5 5 HELIX 6 6 PRO A 143 LYS A 161 1 19 HELIX 7 7 ASP A 162 VAL A 166 5 5 HELIX 8 8 LYS A 178 ALA A 186 1 9 HELIX 9 9 SER A 194 TYR A 202 1 9 HELIX 10 10 PRO A 213 PHE A 217 5 5 HELIX 11 11 PRO A 241 PHE A 253 1 13 HELIX 12 12 TYR A 259 GLY A 265 1 7 HELIX 13 13 MSE A 266 PHE A 268 5 3 HELIX 14 14 GLN A 272 ALA A 284 1 13 HELIX 15 15 ARG A 291 LEU A 295 5 5 HELIX 16 16 SER A 296 ASP A 314 1 19 HELIX 17 17 ASN A 321 LEU A 326 1 6 SHEET 1 A 7 LEU A 105 VAL A 108 0 SHEET 2 A 7 GLU A 80 VAL A 84 1 N VAL A 83 O ARG A 106 SHEET 3 A 7 TYR A 58 VAL A 62 1 N VAL A 59 O LEU A 82 SHEET 4 A 7 VAL A 136 GLY A 140 1 O HIS A 137 N TYR A 60 SHEET 5 A 7 LYS A 171 GLN A 177 1 O THR A 173 N ILE A 138 SHEET 6 A 7 VAL A 225 PRO A 232 -1 O LEU A 230 N MSE A 172 SHEET 7 A 7 CYS A 204 ILE A 212 -1 N GLU A 207 O HIS A 229 LINK C GLN A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N LEU A 97 1555 1555 1.33 LINK C LYS A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N THR A 173 1555 1555 1.33 LINK C ILE A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N ALA A 200 1555 1555 1.33 LINK C GLY A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N LEU A 267 1555 1555 1.33 LINK C LEU A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N HIS A 299 1555 1555 1.33 LINK C LYS A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N CYS A 311 1555 1555 1.33 CISPEP 1 VAL A 218 PRO A 219 0 -2.35 SITE 1 AC1 19 GLN A 35 ASN A 36 PHE A 37 LEU A 38 SITE 2 AC1 19 GLY A 63 PRO A 64 GLY A 65 VAL A 84 SITE 3 AC1 19 GLU A 85 LYS A 86 ASP A 87 PHE A 90 SITE 4 AC1 19 GLY A 110 ASP A 111 VAL A 112 ASN A 141 SITE 5 AC1 19 PRO A 143 VAL A 146 HOH A 513 SITE 1 AC2 3 LYS A 258 TYR A 259 ARG A 262 CRYST1 47.700 101.680 211.710 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004723 0.00000