HEADER LYASE 31-JUL-12 4GDM TITLE CRYSTAL STRUCTURE OF E.COLI MENH COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE COMPND 3 SYNTHASE; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: SHCHC SYNTHASE; COMPND 6 EC: 4.2.99.20; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2263, JW2258, MENH, YFBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM KEYWDS MENAQUINONE BIOSYNTHESIS, ALPHA BETA HYDROLASE, 2-SUCCINYL-6-HYDROXY- KEYWDS 2 2, 4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE, MENH, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,E.N.BAKER,Z.GUO,M.JIANG REVDAT 5 28-FEB-24 4GDM 1 REMARK SEQADV REVDAT 4 15-NOV-17 4GDM 1 REMARK REVDAT 3 04-FEB-15 4GDM 1 AUTHOR REVDAT 2 15-MAY-13 4GDM 1 JRNL REVDAT 1 08-MAY-13 4GDM 0 JRNL AUTH J.M.JOHNSTON,M.JIANG,Z.GUO,E.N.BAKER JRNL TITL CRYSTAL STRUCTURES OF E. COLI NATIVE MENH AND TWO ACTIVE JRNL TITL 2 SITE MUTANTS. JRNL REF PLOS ONE V. 8 61325 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23637813 JRNL DOI 10.1371/JOURNAL.PONE.0061325 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3107 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2742 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2954 REMARK 3 BIN R VALUE (WORKING SET) : 0.2726 REMARK 3 BIN FREE R VALUE : 0.3022 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04620 REMARK 3 B22 (A**2) : -2.04620 REMARK 3 B33 (A**2) : 4.09240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.367 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.291 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.225 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.295 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.228 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6110 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8297 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2753 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 150 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 921 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6110 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 743 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6877 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.19 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 45.774 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.50 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.93400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, AMMONIUM SULFATE, REMARK 280 LITHIUM SULFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 58.33200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 238.47450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.23725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.33200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 357.71175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 357.71175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.33200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.23725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 58.33200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 238.47450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.33200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 238.47450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.33200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 357.71175 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 119.23725 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.33200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 119.23725 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 357.71175 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.33200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.33200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 238.47450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 MET B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 MET C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 SER C -8 REMARK 465 SER C -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B -2 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 -175.61 -67.99 REMARK 500 SER A 24 -8.05 71.29 REMARK 500 PHE A 37 47.77 -100.43 REMARK 500 SER A 86 -101.63 42.78 REMARK 500 THR A 137 -74.45 -122.25 REMARK 500 LYS B 11 121.98 -39.65 REMARK 500 SER B 24 -0.16 84.19 REMARK 500 CYS B 27 1.37 -64.78 REMARK 500 SER B 86 -103.49 47.43 REMARK 500 GLN B 116 -73.76 -78.32 REMARK 500 SER C 24 -9.15 82.51 REMARK 500 ALA C 38 -7.97 -59.95 REMARK 500 SER C 86 -100.69 48.50 REMARK 500 GLN C 116 -70.90 -74.36 REMARK 500 THR C 183 45.96 -108.82 REMARK 500 ALA C 218 -2.74 -56.96 REMARK 500 ARG C 251 34.99 -92.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GEC RELATED DB: PDB REMARK 900 E. COLI MENH R124A MUTANT STRUCTURE REMARK 900 RELATED ID: 4GEG RELATED DB: PDB REMARK 900 E. COLI MENH Y85F MUTANT STRUCTURE DBREF 4GDM A 1 252 UNP P37355 MENH_ECOLI 1 252 DBREF 4GDM B 1 252 UNP P37355 MENH_ECOLI 1 252 DBREF 4GDM C 1 252 UNP P37355 MENH_ECOLI 1 252 SEQADV 4GDM MET A -15 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS A -14 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS A -13 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS A -12 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS A -11 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS A -10 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS A -9 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER A -8 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER A -7 UNP P37355 EXPRESSION TAG SEQADV 4GDM GLY A -6 UNP P37355 EXPRESSION TAG SEQADV 4GDM LEU A -5 UNP P37355 EXPRESSION TAG SEQADV 4GDM VAL A -4 UNP P37355 EXPRESSION TAG SEQADV 4GDM PRO A -3 UNP P37355 EXPRESSION TAG SEQADV 4GDM ARG A -2 UNP P37355 EXPRESSION TAG SEQADV 4GDM GLY A -1 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER A 0 UNP P37355 EXPRESSION TAG SEQADV 4GDM MET B -15 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS B -14 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS B -13 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS B -12 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS B -11 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS B -10 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS B -9 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER B -8 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER B -7 UNP P37355 EXPRESSION TAG SEQADV 4GDM GLY B -6 UNP P37355 EXPRESSION TAG SEQADV 4GDM LEU B -5 UNP P37355 EXPRESSION TAG SEQADV 4GDM VAL B -4 UNP P37355 EXPRESSION TAG SEQADV 4GDM PRO B -3 UNP P37355 EXPRESSION TAG SEQADV 4GDM ARG B -2 UNP P37355 EXPRESSION TAG SEQADV 4GDM GLY B -1 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER B 0 UNP P37355 EXPRESSION TAG SEQADV 4GDM MET C -15 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS C -14 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS C -13 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS C -12 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS C -11 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS C -10 UNP P37355 EXPRESSION TAG SEQADV 4GDM HIS C -9 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER C -8 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER C -7 UNP P37355 EXPRESSION TAG SEQADV 4GDM GLY C -6 UNP P37355 EXPRESSION TAG SEQADV 4GDM LEU C -5 UNP P37355 EXPRESSION TAG SEQADV 4GDM VAL C -4 UNP P37355 EXPRESSION TAG SEQADV 4GDM PRO C -3 UNP P37355 EXPRESSION TAG SEQADV 4GDM ARG C -2 UNP P37355 EXPRESSION TAG SEQADV 4GDM GLY C -1 UNP P37355 EXPRESSION TAG SEQADV 4GDM SER C 0 UNP P37355 EXPRESSION TAG SEQRES 1 A 268 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 268 ARG GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 3 A 268 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 4 A 268 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 5 A 268 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 6 A 268 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 7 A 268 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 8 A 268 ASN ILE LEU ASP PHE TRP LEU VAL GLY TYR SER LEU GLY SEQRES 9 A 268 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 10 A 268 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 11 A 268 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 12 A 268 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 13 A 268 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 14 A 268 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 15 A 268 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 16 A 268 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 17 A 268 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 18 A 268 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 19 A 268 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 20 A 268 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 21 A 268 SER LEU ALA GLN ILE LEU ARG PHE SEQRES 1 B 268 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 B 268 ARG GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 3 B 268 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 4 B 268 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 5 B 268 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 6 B 268 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 7 B 268 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 8 B 268 ASN ILE LEU ASP PHE TRP LEU VAL GLY TYR SER LEU GLY SEQRES 9 B 268 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 10 B 268 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 11 B 268 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 12 B 268 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 13 B 268 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 14 B 268 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 15 B 268 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 16 B 268 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 17 B 268 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 18 B 268 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 19 B 268 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 20 B 268 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 21 B 268 SER LEU ALA GLN ILE LEU ARG PHE SEQRES 1 C 268 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 C 268 ARG GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 3 C 268 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 4 C 268 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 5 C 268 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 6 C 268 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 7 C 268 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 8 C 268 ASN ILE LEU ASP PHE TRP LEU VAL GLY TYR SER LEU GLY SEQRES 9 C 268 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 10 C 268 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 11 C 268 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 12 C 268 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 13 C 268 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 14 C 268 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 15 C 268 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 16 C 268 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 17 C 268 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 18 C 268 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 19 C 268 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 20 C 268 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 21 C 268 SER LEU ALA GLN ILE LEU ARG PHE HET SO4 A 301 5 HET CL A 302 1 HET SO4 B 301 5 HET SO4 B 302 5 HET CL B 303 1 HET GOL B 304 6 HET SO4 C 301 5 HET CL C 302 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 CL 3(CL 1-) FORMUL 9 GOL C3 H8 O3 FORMUL 12 HOH *65(H2 O) HELIX 1 1 TRP A 30 GLU A 35 1 6 HELIX 2 2 HIS A 50 ALA A 54 5 5 HELIX 3 3 GLY A 60 TYR A 75 1 16 HELIX 4 4 SER A 86 GLY A 99 1 14 HELIX 5 5 ASN A 117 THR A 137 1 21 HELIX 6 6 PRO A 139 TYR A 148 1 10 HELIX 7 7 GLN A 149 ALA A 154 5 6 HELIX 8 8 ASN A 157 ASN A 170 1 14 HELIX 9 9 ASN A 172 THR A 183 1 12 HELIX 10 10 LEU A 191 ALA A 197 1 7 HELIX 11 11 ASP A 210 ALA A 218 1 9 HELIX 12 12 ASN A 233 ASN A 238 1 6 HELIX 13 13 ASN A 238 ARG A 251 1 14 HELIX 14 14 TRP B 30 GLU B 35 1 6 HELIX 15 15 ALA B 36 ALA B 38 5 3 HELIX 16 16 HIS B 50 ALA B 54 5 5 HELIX 17 17 GLY B 60 TYR B 75 1 16 HELIX 18 18 SER B 86 GLY B 99 1 14 HELIX 19 19 ASN B 117 GLU B 138 1 22 HELIX 20 20 PRO B 139 TYR B 148 1 10 HELIX 21 21 GLN B 149 ALA B 154 5 6 HELIX 22 22 ASN B 157 ASN B 170 1 14 HELIX 23 23 ASN B 172 THR B 183 1 12 HELIX 24 24 SER B 184 GLN B 188 5 5 HELIX 25 25 LEU B 191 ALA B 197 1 7 HELIX 26 26 ASP B 210 ALA B 218 1 9 HELIX 27 27 ASN B 233 ASN B 238 1 6 HELIX 28 28 ASN B 238 ARG B 251 1 14 HELIX 29 29 TRP C 30 GLU C 35 1 6 HELIX 30 30 HIS C 50 ALA C 54 5 5 HELIX 31 31 GLY C 60 ASN C 76 1 17 HELIX 32 32 SER C 86 GLY C 99 1 14 HELIX 33 33 ASN C 117 GLU C 138 1 22 HELIX 34 34 PRO C 139 TYR C 148 1 10 HELIX 35 35 GLN C 149 ALA C 154 5 6 HELIX 36 36 ASN C 157 SER C 169 1 13 HELIX 37 37 ASN C 172 THR C 183 1 12 HELIX 38 38 SER C 184 GLN C 188 5 5 HELIX 39 39 LEU C 191 ALA C 197 1 7 HELIX 40 40 ASP C 210 ALA C 218 1 9 HELIX 41 41 ASN C 233 ASN C 238 1 6 HELIX 42 42 ASN C 238 ARG C 251 1 14 SHEET 1 A 7 ALA A 5 LYS A 8 0 SHEET 2 A 7 SER A 41 VAL A 45 -1 O ARG A 42 N LYS A 8 SHEET 3 A 7 TRP A 16 LEU A 20 1 N LEU A 17 O LEU A 43 SHEET 4 A 7 PHE A 80 TYR A 85 1 O VAL A 83 N LEU A 20 SHEET 5 A 7 LEU A 103 GLU A 109 1 O CYS A 104 N PHE A 80 SHEET 6 A 7 ALA A 201 GLY A 207 1 O LEU A 205 N VAL A 108 SHEET 7 A 7 ASP A 223 ILE A 227 1 O HIS A 225 N TYR A 204 SHEET 1 B 7 ALA B 5 LYS B 8 0 SHEET 2 B 7 SER B 41 VAL B 45 -1 O ARG B 42 N LYS B 8 SHEET 3 B 7 TRP B 16 LEU B 20 1 N LEU B 17 O SER B 41 SHEET 4 B 7 PHE B 80 TYR B 85 1 O TRP B 81 N VAL B 18 SHEET 5 B 7 LEU B 103 GLU B 109 1 O CYS B 104 N PHE B 80 SHEET 6 B 7 ALA B 201 GLY B 207 1 O TYR B 203 N VAL B 106 SHEET 7 B 7 ASP B 223 ILE B 227 1 O HIS B 225 N TYR B 204 SHEET 1 C 7 ALA C 5 LYS C 8 0 SHEET 2 C 7 SER C 41 VAL C 45 -1 O TYR C 44 N GLN C 6 SHEET 3 C 7 TRP C 16 LEU C 20 1 N LEU C 17 O SER C 41 SHEET 4 C 7 PHE C 80 TYR C 85 1 O TRP C 81 N TRP C 16 SHEET 5 C 7 LEU C 103 GLU C 109 1 O GLU C 109 N GLY C 84 SHEET 6 C 7 PHE C 202 GLY C 207 1 O TYR C 203 N VAL C 106 SHEET 7 C 7 ASP C 223 ILE C 227 1 O HIS C 225 N TYR C 204 SITE 1 AC1 6 SER A 86 LEU A 87 ARG A 90 ARG A 124 SITE 2 AC1 6 HOH A 409 HOH A 427 SITE 1 AC2 4 TYR A 85 TYR A 148 ARG A 168 ASN A 233 SITE 1 AC3 6 SER B 86 LEU B 87 ARG B 90 ARG B 124 SITE 2 AC3 6 HOH B 401 HOH B 416 SITE 1 AC4 5 LYS B 8 HIS B 9 PRO C 15 TRP C 81 SITE 2 AC4 5 CYS C 104 SITE 1 AC5 5 TYR B 85 TYR B 148 ARG B 168 ASN B 233 SITE 2 AC5 5 HOH B 417 SITE 1 AC6 4 HIS A 9 ARG B 198 ALA B 201 PHE B 202 SITE 1 AC7 6 SER C 86 LEU C 87 ARG C 90 ARG C 124 SITE 2 AC7 6 HOH C 409 HOH C 410 SITE 1 AC8 4 TYR C 85 TYR C 148 ARG C 168 ASN C 233 CRYST1 116.664 116.664 476.949 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002097 0.00000