HEADER LYASE 01-AUG-12 4GEG TITLE CRYSTAL STRUCTURE OF E.COLI MENH Y85F MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE COMPND 3 SYNTHASE; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: SHCHC SYNTHASE; COMPND 6 EC: 4.2.99.20; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2263, JW2258, MENH, MENH_Y85FMUTANT, YFBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM KEYWDS MENAQUINONE BIOSYNTHESIS, ALPHA BETA HYDROLASE, 2-SUCCINYL-6-HYDROXY- KEYWDS 2 2, 4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE, MENH Y85F MUTANT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,E.N.BAKER,Z.GUO,M.JIANG REVDAT 4 28-FEB-24 4GEG 1 REMARK SEQADV REVDAT 3 04-FEB-15 4GEG 1 AUTHOR REVDAT 2 15-MAY-13 4GEG 1 JRNL REVDAT 1 08-MAY-13 4GEG 0 JRNL AUTH J.M.JOHNSTON,M.JIANG,Z.GUO,E.N.BAKER JRNL TITL CRYSTAL STRUCTURES OF E. COLI NATIVE MENH AND TWO ACTIVE JRNL TITL 2 SITE MUTANTS. JRNL REF PLOS ONE V. 8 61325 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23637813 JRNL DOI 10.1371/JOURNAL.PONE.0061325 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2838 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2158 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2679 REMARK 3 BIN R VALUE (WORKING SET) : 0.2117 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5959 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56280 REMARK 3 B22 (A**2) : -2.23740 REMARK 3 B33 (A**2) : 2.80010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.29530 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.265 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.431 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.272 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.389 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.270 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.843 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6164 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8370 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2764 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 149 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 923 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6164 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 745 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7428 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953695 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.489 REMARK 200 RESOLUTION RANGE LOW (A) : 124.587 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.32400 REMARK 200 R SYM (I) : 0.32400 REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.95400 REMARK 200 R SYM FOR SHELL (I) : 0.95400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, AMMONIUM SULFATE, REMARK 280 LITHIUM SULFATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 125.24950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.79450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 125.24950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.79450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 MET B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 PHE B 252 REMARK 465 MET C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 SER C -8 REMARK 465 SER C -7 REMARK 465 GLY C -6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -2 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 24 0.04 82.69 REMARK 500 PHE A 37 54.05 -100.47 REMARK 500 SER A 86 -110.05 42.50 REMARK 500 SER B 24 -1.69 80.50 REMARK 500 SER B 86 -102.00 48.44 REMARK 500 ALA B 221 41.20 -83.09 REMARK 500 SER C 24 -8.76 93.29 REMARK 500 PHE C 37 53.30 -105.05 REMARK 500 SER C 86 -104.03 51.17 REMARK 500 THR C 137 -36.58 -136.00 REMARK 500 ASP C 223 73.90 -64.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GDM RELATED DB: PDB REMARK 900 NATIVE E. COLI MENH STRUCTURE REMARK 900 RELATED ID: 4GEC RELATED DB: PDB REMARK 900 E. COLI MENH R124A MUTANT STRUCTURE DBREF 4GEG A 1 252 UNP P37355 MENH_ECOLI 1 252 DBREF 4GEG B 1 252 UNP P37355 MENH_ECOLI 1 252 DBREF 4GEG C 1 252 UNP P37355 MENH_ECOLI 1 252 SEQADV 4GEG MET A -15 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS A -14 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS A -13 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS A -12 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS A -11 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS A -10 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS A -9 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER A -8 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER A -7 UNP P37355 EXPRESSION TAG SEQADV 4GEG GLY A -6 UNP P37355 EXPRESSION TAG SEQADV 4GEG LEU A -5 UNP P37355 EXPRESSION TAG SEQADV 4GEG VAL A -4 UNP P37355 EXPRESSION TAG SEQADV 4GEG PRO A -3 UNP P37355 EXPRESSION TAG SEQADV 4GEG ARG A -2 UNP P37355 EXPRESSION TAG SEQADV 4GEG GLY A -1 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER A 0 UNP P37355 EXPRESSION TAG SEQADV 4GEG PHE A 85 UNP P37355 TYR 85 ENGINEERED MUTATION SEQADV 4GEG MET B -15 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS B -14 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS B -13 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS B -12 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS B -11 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS B -10 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS B -9 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER B -8 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER B -7 UNP P37355 EXPRESSION TAG SEQADV 4GEG GLY B -6 UNP P37355 EXPRESSION TAG SEQADV 4GEG LEU B -5 UNP P37355 EXPRESSION TAG SEQADV 4GEG VAL B -4 UNP P37355 EXPRESSION TAG SEQADV 4GEG PRO B -3 UNP P37355 EXPRESSION TAG SEQADV 4GEG ARG B -2 UNP P37355 EXPRESSION TAG SEQADV 4GEG GLY B -1 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER B 0 UNP P37355 EXPRESSION TAG SEQADV 4GEG PHE B 85 UNP P37355 TYR 85 ENGINEERED MUTATION SEQADV 4GEG MET C -15 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS C -14 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS C -13 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS C -12 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS C -11 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS C -10 UNP P37355 EXPRESSION TAG SEQADV 4GEG HIS C -9 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER C -8 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER C -7 UNP P37355 EXPRESSION TAG SEQADV 4GEG GLY C -6 UNP P37355 EXPRESSION TAG SEQADV 4GEG LEU C -5 UNP P37355 EXPRESSION TAG SEQADV 4GEG VAL C -4 UNP P37355 EXPRESSION TAG SEQADV 4GEG PRO C -3 UNP P37355 EXPRESSION TAG SEQADV 4GEG ARG C -2 UNP P37355 EXPRESSION TAG SEQADV 4GEG GLY C -1 UNP P37355 EXPRESSION TAG SEQADV 4GEG SER C 0 UNP P37355 EXPRESSION TAG SEQADV 4GEG PHE C 85 UNP P37355 TYR 85 ENGINEERED MUTATION SEQRES 1 A 268 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 268 ARG GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 3 A 268 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 4 A 268 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 5 A 268 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 6 A 268 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 7 A 268 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 8 A 268 ASN ILE LEU ASP PHE TRP LEU VAL GLY PHE SER LEU GLY SEQRES 9 A 268 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 10 A 268 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 11 A 268 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 12 A 268 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 13 A 268 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 14 A 268 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 15 A 268 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 16 A 268 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 17 A 268 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 18 A 268 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 19 A 268 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 20 A 268 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 21 A 268 SER LEU ALA GLN ILE LEU ARG PHE SEQRES 1 B 268 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 B 268 ARG GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 3 B 268 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 4 B 268 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 5 B 268 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 6 B 268 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 7 B 268 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 8 B 268 ASN ILE LEU ASP PHE TRP LEU VAL GLY PHE SER LEU GLY SEQRES 9 B 268 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 10 B 268 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 11 B 268 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 12 B 268 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 13 B 268 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 14 B 268 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 15 B 268 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 16 B 268 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 17 B 268 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 18 B 268 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 19 B 268 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 20 B 268 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 21 B 268 SER LEU ALA GLN ILE LEU ARG PHE SEQRES 1 C 268 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 C 268 ARG GLY SER MET ILE LEU HIS ALA GLN ALA LYS HIS GLY SEQRES 3 C 268 LYS PRO GLY LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SEQRES 4 C 268 SER GLY ASP CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA SEQRES 5 C 268 PHE ALA ASP TYR SER ARG LEU TYR VAL ASP LEU PRO GLY SEQRES 6 C 268 HIS GLY GLY SER ALA ALA ILE SER VAL ASP GLY PHE ASP SEQRES 7 C 268 ASP VAL THR ASP LEU LEU ARG LYS THR LEU VAL SER TYR SEQRES 8 C 268 ASN ILE LEU ASP PHE TRP LEU VAL GLY PHE SER LEU GLY SEQRES 9 C 268 GLY ARG VAL ALA MET MET ALA ALA CYS GLN GLY LEU ALA SEQRES 10 C 268 GLY LEU CYS GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY SEQRES 11 C 268 LEU GLN ASN ALA GLU GLN ARG ALA GLU ARG GLN ARG SER SEQRES 12 C 268 ASP ARG GLN TRP VAL GLN ARG PHE LEU THR GLU PRO LEU SEQRES 13 C 268 THR ALA VAL PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE SEQRES 14 C 268 ALA SER LEU ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA SEQRES 15 C 268 LEU ARG SER ASN ASN ASN GLY ALA THR LEU ALA ALA MET SEQRES 16 C 268 LEU GLU ALA THR SER LEU ALA VAL GLN PRO ASP LEU ARG SEQRES 17 C 268 ALA ASN LEU SER ALA ARG THR PHE ALA PHE TYR TYR LEU SEQRES 18 C 268 CYS GLY GLU ARG ASP SER LYS PHE ARG ALA LEU ALA ALA SEQRES 19 C 268 GLU LEU ALA ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY SEQRES 20 C 268 HIS ASN ALA HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SEQRES 21 C 268 SER LEU ALA GLN ILE LEU ARG PHE HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET CL A 305 1 HET EDO A 306 4 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET CL B 305 1 HET GOL B 306 6 HET CL B 307 1 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HET SO4 C 305 5 HET CL C 306 1 HET CL C 307 1 HET GOL C 308 6 HET CL C 309 1 HET CL C 310 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 13(O4 S 2-) FORMUL 8 CL 7(CL 1-) FORMUL 9 EDO C2 H6 O2 FORMUL 15 GOL 2(C3 H8 O3) FORMUL 27 HOH *419(H2 O) HELIX 1 1 TRP A 30 GLU A 35 1 6 HELIX 2 2 HIS A 50 ALA A 54 5 5 HELIX 3 3 GLY A 60 TYR A 75 1 16 HELIX 4 4 SER A 86 GLY A 99 1 14 HELIX 5 5 ASN A 117 GLU A 138 1 22 HELIX 6 6 PRO A 139 TYR A 148 1 10 HELIX 7 7 GLN A 149 ALA A 154 5 6 HELIX 8 8 ASN A 157 SER A 169 1 13 HELIX 9 9 ASN A 172 THR A 183 1 12 HELIX 10 10 LEU A 191 ALA A 197 1 7 HELIX 11 11 ASP A 210 GLU A 219 1 10 HELIX 12 12 ASN A 233 ASN A 238 1 6 HELIX 13 13 ASN A 238 ARG A 251 1 14 HELIX 14 14 TRP B 30 GLU B 35 1 6 HELIX 15 15 HIS B 50 ALA B 54 5 5 HELIX 16 16 GLY B 60 TYR B 75 1 16 HELIX 17 17 SER B 86 CYS B 97 1 12 HELIX 18 18 ASN B 117 LEU B 136 1 20 HELIX 19 19 PRO B 139 TYR B 148 1 10 HELIX 20 20 GLN B 149 ALA B 154 5 6 HELIX 21 21 ASN B 157 SER B 169 1 13 HELIX 22 22 ASN B 172 THR B 183 1 12 HELIX 23 23 SER B 184 GLN B 188 5 5 HELIX 24 24 LEU B 191 ALA B 197 1 7 HELIX 25 25 ASP B 210 ALA B 218 1 9 HELIX 26 26 ASN B 233 ASN B 238 1 6 HELIX 27 27 ASN B 238 ARG B 251 1 14 HELIX 28 28 TRP C 30 GLU C 35 1 6 HELIX 29 29 HIS C 50 ALA C 54 5 5 HELIX 30 30 GLY C 60 TYR C 75 1 16 HELIX 31 31 SER C 86 GLY C 99 1 14 HELIX 32 32 ASN C 117 LEU C 136 1 20 HELIX 33 33 PRO C 139 TYR C 148 1 10 HELIX 34 34 GLN C 149 ALA C 154 5 6 HELIX 35 35 ASN C 157 SER C 169 1 13 HELIX 36 36 ASN C 172 THR C 183 1 12 HELIX 37 37 LEU C 191 ALA C 197 1 7 HELIX 38 38 ASP C 210 LEU C 220 1 11 HELIX 39 39 ASN C 233 ASN C 238 1 6 HELIX 40 40 ASN C 238 ARG C 251 1 14 SHEET 1 A 7 ALA A 5 LYS A 8 0 SHEET 2 A 7 SER A 41 VAL A 45 -1 O ARG A 42 N LYS A 8 SHEET 3 A 7 TRP A 16 LEU A 20 1 N PHE A 19 O LEU A 43 SHEET 4 A 7 PHE A 80 PHE A 85 1 O VAL A 83 N VAL A 18 SHEET 5 A 7 LEU A 103 GLU A 109 1 O ILE A 107 N LEU A 82 SHEET 6 A 7 ALA A 201 GLY A 207 1 O LEU A 205 N VAL A 108 SHEET 7 A 7 CYS A 224 ILE A 227 1 O ILE A 227 N CYS A 206 SHEET 1 B 7 ALA B 5 LYS B 8 0 SHEET 2 B 7 SER B 41 VAL B 45 -1 O ARG B 42 N LYS B 8 SHEET 3 B 7 TRP B 16 LEU B 20 1 N LEU B 17 O LEU B 43 SHEET 4 B 7 PHE B 80 PHE B 85 1 O TRP B 81 N TRP B 16 SHEET 5 B 7 LEU B 103 GLU B 109 1 O CYS B 104 N PHE B 80 SHEET 6 B 7 PHE B 202 GLY B 207 1 O TYR B 203 N VAL B 108 SHEET 7 B 7 ASP B 223 ILE B 227 1 O ILE B 227 N CYS B 206 SHEET 1 C 7 ALA C 5 LYS C 8 0 SHEET 2 C 7 SER C 41 VAL C 45 -1 O ARG C 42 N LYS C 8 SHEET 3 C 7 TRP C 16 LEU C 20 1 N LEU C 17 O SER C 41 SHEET 4 C 7 PHE C 80 PHE C 85 1 O TRP C 81 N VAL C 18 SHEET 5 C 7 LEU C 103 GLU C 109 1 O CYS C 104 N PHE C 80 SHEET 6 C 7 ALA C 201 GLY C 207 1 O LEU C 205 N VAL C 108 SHEET 7 C 7 HIS C 225 ILE C 227 1 O ILE C 227 N CYS C 206 SITE 1 AC1 8 SER A 86 LEU A 87 ARG A 90 EDO A 306 SITE 2 AC1 8 HOH A 452 HOH A 503 HOH A 526 HOH A 540 SITE 1 AC2 5 GLY A 60 PHE A 61 ASP A 62 HOH A 401 SITE 2 AC2 5 HOH A 529 SITE 1 AC3 5 ARG A 198 ALA A 201 PHE A 202 TYR A 203 SITE 2 AC3 5 HOH A 511 SITE 1 AC4 4 ALA A 7 LYS A 8 HIS A 9 HOH A 493 SITE 1 AC5 3 TYR A 148 ARG A 168 ASN A 233 SITE 1 AC6 5 ARG A 124 VAL A 152 PHE A 213 SO4 A 301 SITE 2 AC6 5 HOH A 418 SITE 1 AC7 7 SER B 86 LEU B 87 ARG B 90 ARG B 124 SITE 2 AC7 7 HOH B 437 HOH B 441 HOH B 534 SITE 1 AC8 2 ARG B 209 ARG B 229 SITE 1 AC9 4 GLU B 163 LEU B 167 ARG B 236 HOH B 491 SITE 1 BC1 4 HOH A 493 ARG B 198 ALA B 201 PHE B 202 SITE 1 BC2 3 TYR B 148 ARG B 168 ASN B 233 SITE 1 BC3 5 HIS B 9 TYR B 75 PRO B 151 VAL B 152 SITE 2 BC3 5 LYS B 212 SITE 1 BC4 1 GLN B 160 SITE 1 BC5 8 SER C 86 ARG C 90 ARG C 124 HOH C 440 SITE 2 BC5 8 HOH C 443 HOH C 474 HOH C 478 HOH C 511 SITE 1 BC6 2 LYS C 8 HIS C 9 SITE 1 BC7 2 ALA C 101 GLY C 102 SITE 1 BC8 1 ARG C 236 SITE 1 BC9 4 SER C 0 MET C 1 ARG C 126 GLN C 130 SITE 1 CC1 3 GLY B 173 HOH B 429 GLY C 173 SITE 1 CC2 3 TYR C 148 ARG C 168 ASN C 233 SITE 1 CC3 6 ARG C 69 GLY C 99 LEU C 100 ALA C 101 SITE 2 CC3 6 HOH C 505 HOH C 512 SITE 1 CC4 3 HOH C 491 HOH C 499 HOH C 533 SITE 1 CC5 2 LEU C 78 ASP C 79 CRYST1 250.499 41.589 93.081 90.00 95.89 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003992 0.000000 0.000412 0.00000 SCALE2 0.000000 0.024045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010800 0.00000