HEADER PROTEIN BINDING/TRANSFERASE 02-AUG-12 4GEH TITLE CRYSTAL STRUCTURE OF MST4 DIMERIZATION DOMAIN COMPLEX WITH PDCD10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 10; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 9-212; COMPND 5 SYNONYM: CEREBRAL CAVERNOUS MALFORMATIONS 3 PROTEIN, TF-1 CELL COMPND 6 APOPTOSIS-RELATED PROTEIN 15; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE/THREONINE-PROTEIN KINASE MST4; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: DIMERIZATION DOMAIN, UNP RESIDUES 325-413; COMPND 12 SYNONYM: MAMMALIAN STE20-LIKE PROTEIN KINASE 4, MST-4, MST3 AND SOK1- COMPND 13 RELATED KINASE, STE20-LIKE KINASE MST4, SERINE/THREONINE-PROTEIN COMPND 14 KINASE MASK; COMPND 15 EC: 2.7.11.1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD10, CCM3, TFAR15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HT-PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: MST4, MASK; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA HELIX-RICH PROTEIN, SERINE/THREONINE-PROTEIN KINASE, PROTEIN KEYWDS 2 BINDING, CELL PROLIFERATION, CELL GROWTH, PROTEIN BINDING- KEYWDS 3 TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,Z.B.SHI,Z.C.ZHOU REVDAT 3 20-MAR-24 4GEH 1 SEQADV REVDAT 2 17-JUL-13 4GEH 1 JRNL REVDAT 1 17-APR-13 4GEH 0 JRNL AUTH M.ZHANG,L.DONG,Z.SHI,S.JIAO,Z.ZHANG,W.ZHANG,G.LIU,C.CHEN, JRNL AUTH 2 M.FENG,Q.HAO,W.WANG,M.YIN,Y.ZHAO,L.ZHANG,Z.ZHOU JRNL TITL STRUCTURAL MECHANISM OF CCM3 HETERODIMERIZATION WITH GCKIII JRNL TITL 2 KINASES JRNL REF STRUCTURE V. 21 680 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23541896 JRNL DOI 10.1016/J.STR.2013.02.015 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4213 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.10000 REMARK 3 B22 (A**2) : -2.13000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4282 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4244 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5769 ; 1.248 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9782 ; 1.018 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 4.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;37.774 ;25.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 840 ;14.901 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 675 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4780 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 15 212 C 15 212 11706 0.12 0.05 REMARK 3 2 B 345 409 D 345 409 3154 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930, 0.97907 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.97100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V TACSIMATE PH 6.0, 0.1M BIS-TRIS REMARK 280 PH 6.5, 18% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.62150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.83950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.00900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.83950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.62150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.00900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 6 REMARK 465 MET A 7 REMARK 465 ALA A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 THR A 14 REMARK 465 MET B 323 REMARK 465 GLY B 324 REMARK 465 SER B 325 REMARK 465 PHE B 326 REMARK 465 THR B 327 REMARK 465 THR B 328 REMARK 465 VAL B 329 REMARK 465 ARG B 330 REMARK 465 LYS B 331 REMARK 465 LYS B 332 REMARK 465 PRO B 333 REMARK 465 ASP B 334 REMARK 465 PRO B 335 REMARK 465 LYS B 336 REMARK 465 LYS B 337 REMARK 465 VAL B 338 REMARK 465 GLN B 339 REMARK 465 ASN B 340 REMARK 465 GLY B 341 REMARK 465 ALA B 342 REMARK 465 GLU B 343 REMARK 465 GLN B 344 REMARK 465 LEU B 350 REMARK 465 SER B 411 REMARK 465 ALA B 412 REMARK 465 ASP B 413 REMARK 465 GLY C 6 REMARK 465 MET C 7 REMARK 465 ALA C 8 REMARK 465 LYS C 9 REMARK 465 ASN C 10 REMARK 465 GLU C 11 REMARK 465 ALA C 12 REMARK 465 GLU C 13 REMARK 465 THR C 14 REMARK 465 MET D 323 REMARK 465 GLY D 324 REMARK 465 SER D 325 REMARK 465 PHE D 326 REMARK 465 THR D 327 REMARK 465 THR D 328 REMARK 465 VAL D 329 REMARK 465 ARG D 330 REMARK 465 LYS D 331 REMARK 465 LYS D 332 REMARK 465 PRO D 333 REMARK 465 ASP D 334 REMARK 465 PRO D 335 REMARK 465 LYS D 336 REMARK 465 LYS D 337 REMARK 465 VAL D 338 REMARK 465 GLN D 339 REMARK 465 ASN D 340 REMARK 465 GLY D 341 REMARK 465 ALA D 342 REMARK 465 GLU D 343 REMARK 465 ASP D 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 124 NE CZ NH1 NH2 REMARK 470 LYS A 172 CD CE NZ REMARK 470 THR B 349 OG1 CG2 REMARK 470 LYS B 383 CD CE NZ REMARK 470 LYS B 401 CE NZ REMARK 470 THR C 15 OG1 CG2 REMARK 470 GLU C 89 CG CD OE1 OE2 REMARK 470 GLU C 90 CD OE1 OE2 REMARK 470 ARG C 108 NE CZ NH1 NH2 REMARK 470 LYS C 165 CE NZ REMARK 470 LYS C 172 CG CD CE NZ REMARK 470 LYS C 183 CD CE NZ REMARK 470 GLN D 344 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 339 O HOH A 367 2.10 REMARK 500 O HOH D 527 O HOH D 529 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 374 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 82 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG D 374 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG D 374 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 346 -66.08 61.11 REMARK 500 GLN B 348 128.46 93.92 REMARK 500 ASP B 368 71.03 -154.50 REMARK 500 SER D 411 40.14 -97.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 4GEH A 9 212 UNP Q9BUL8 PDC10_HUMAN 9 212 DBREF 4GEH B 325 413 UNP Q9P289 MST4_HUMAN 325 413 DBREF 4GEH C 9 212 UNP Q9BUL8 PDC10_HUMAN 9 212 DBREF 4GEH D 325 413 UNP Q9P289 MST4_HUMAN 325 413 SEQADV 4GEH GLY A 6 UNP Q9BUL8 EXPRESSION TAG SEQADV 4GEH MET A 7 UNP Q9BUL8 EXPRESSION TAG SEQADV 4GEH ALA A 8 UNP Q9BUL8 EXPRESSION TAG SEQADV 4GEH MET B 323 UNP Q9P289 EXPRESSION TAG SEQADV 4GEH GLY B 324 UNP Q9P289 EXPRESSION TAG SEQADV 4GEH GLY C 6 UNP Q9BUL8 EXPRESSION TAG SEQADV 4GEH MET C 7 UNP Q9BUL8 EXPRESSION TAG SEQADV 4GEH ALA C 8 UNP Q9BUL8 EXPRESSION TAG SEQADV 4GEH MET D 323 UNP Q9P289 EXPRESSION TAG SEQADV 4GEH GLY D 324 UNP Q9P289 EXPRESSION TAG SEQRES 1 A 207 GLY MET ALA LYS ASN GLU ALA GLU THR THR SER MET VAL SEQRES 2 A 207 SER MET PRO LEU TYR ALA VAL MET TYR PRO VAL PHE ASN SEQRES 3 A 207 GLU LEU GLU ARG VAL ASN LEU SER ALA ALA GLN THR LEU SEQRES 4 A 207 ARG ALA ALA PHE ILE LYS ALA GLU LYS GLU ASN PRO GLY SEQRES 5 A 207 LEU THR GLN ASP ILE ILE MET LYS ILE LEU GLU LYS LYS SEQRES 6 A 207 SER VAL GLU VAL ASN PHE THR GLU SER LEU LEU ARG MET SEQRES 7 A 207 ALA ALA ASP ASP VAL GLU GLU TYR MET ILE GLU ARG PRO SEQRES 8 A 207 GLU PRO GLU PHE GLN ASP LEU ASN GLU LYS ALA ARG ALA SEQRES 9 A 207 LEU LYS GLN ILE LEU SER LYS ILE PRO ASP GLU ILE ASN SEQRES 10 A 207 ASP ARG VAL ARG PHE LEU GLN THR ILE LYS ASP ILE ALA SEQRES 11 A 207 SER ALA ILE LYS GLU LEU LEU ASP THR VAL ASN ASN VAL SEQRES 12 A 207 PHE LYS LYS TYR GLN TYR GLN ASN ARG ARG ALA LEU GLU SEQRES 13 A 207 HIS GLN LYS LYS GLU PHE VAL LYS TYR SER LYS SER PHE SEQRES 14 A 207 SER ASP THR LEU LYS THR TYR PHE LYS ASP GLY LYS ALA SEQRES 15 A 207 ILE ASN VAL PHE VAL SER ALA ASN ARG LEU ILE HIS GLN SEQRES 16 A 207 THR ASN LEU ILE LEU GLN THR PHE LYS THR VAL ALA SEQRES 1 B 91 MET GLY SER PHE THR THR VAL ARG LYS LYS PRO ASP PRO SEQRES 2 B 91 LYS LYS VAL GLN ASN GLY ALA GLU GLN ASP LEU VAL GLN SEQRES 3 B 91 THR LEU SER CYS LEU SER MET ILE ILE THR PRO ALA PHE SEQRES 4 B 91 ALA GLU LEU LYS GLN GLN ASP GLU ASN ASN ALA SER ARG SEQRES 5 B 91 ASN GLN ALA ILE GLU GLU LEU GLU LYS SER ILE ALA VAL SEQRES 6 B 91 ALA GLU ALA ALA CYS PRO GLY ILE THR ASP LYS MET VAL SEQRES 7 B 91 LYS LYS LEU ILE GLU LYS PHE GLN LYS CYS SER ALA ASP SEQRES 1 C 207 GLY MET ALA LYS ASN GLU ALA GLU THR THR SER MET VAL SEQRES 2 C 207 SER MET PRO LEU TYR ALA VAL MET TYR PRO VAL PHE ASN SEQRES 3 C 207 GLU LEU GLU ARG VAL ASN LEU SER ALA ALA GLN THR LEU SEQRES 4 C 207 ARG ALA ALA PHE ILE LYS ALA GLU LYS GLU ASN PRO GLY SEQRES 5 C 207 LEU THR GLN ASP ILE ILE MET LYS ILE LEU GLU LYS LYS SEQRES 6 C 207 SER VAL GLU VAL ASN PHE THR GLU SER LEU LEU ARG MET SEQRES 7 C 207 ALA ALA ASP ASP VAL GLU GLU TYR MET ILE GLU ARG PRO SEQRES 8 C 207 GLU PRO GLU PHE GLN ASP LEU ASN GLU LYS ALA ARG ALA SEQRES 9 C 207 LEU LYS GLN ILE LEU SER LYS ILE PRO ASP GLU ILE ASN SEQRES 10 C 207 ASP ARG VAL ARG PHE LEU GLN THR ILE LYS ASP ILE ALA SEQRES 11 C 207 SER ALA ILE LYS GLU LEU LEU ASP THR VAL ASN ASN VAL SEQRES 12 C 207 PHE LYS LYS TYR GLN TYR GLN ASN ARG ARG ALA LEU GLU SEQRES 13 C 207 HIS GLN LYS LYS GLU PHE VAL LYS TYR SER LYS SER PHE SEQRES 14 C 207 SER ASP THR LEU LYS THR TYR PHE LYS ASP GLY LYS ALA SEQRES 15 C 207 ILE ASN VAL PHE VAL SER ALA ASN ARG LEU ILE HIS GLN SEQRES 16 C 207 THR ASN LEU ILE LEU GLN THR PHE LYS THR VAL ALA SEQRES 1 D 91 MET GLY SER PHE THR THR VAL ARG LYS LYS PRO ASP PRO SEQRES 2 D 91 LYS LYS VAL GLN ASN GLY ALA GLU GLN ASP LEU VAL GLN SEQRES 3 D 91 THR LEU SER CYS LEU SER MET ILE ILE THR PRO ALA PHE SEQRES 4 D 91 ALA GLU LEU LYS GLN GLN ASP GLU ASN ASN ALA SER ARG SEQRES 5 D 91 ASN GLN ALA ILE GLU GLU LEU GLU LYS SER ILE ALA VAL SEQRES 6 D 91 ALA GLU ALA ALA CYS PRO GLY ILE THR ASP LYS MET VAL SEQRES 7 D 91 LYS LYS LEU ILE GLU LYS PHE GLN LYS CYS SER ALA ASP FORMUL 5 HOH *174(H2 O) HELIX 1 1 SER A 16 VAL A 18 5 3 HELIX 2 2 SER A 19 VAL A 25 1 7 HELIX 3 3 VAL A 25 ARG A 35 1 11 HELIX 4 4 ASN A 37 ASN A 55 1 19 HELIX 5 5 GLY A 57 LYS A 70 1 14 HELIX 6 6 ASN A 75 MET A 83 1 9 HELIX 7 7 ASP A 87 MET A 92 1 6 HELIX 8 8 GLU A 97 LYS A 116 1 20 HELIX 9 9 LYS A 116 ILE A 121 1 6 HELIX 10 10 ASP A 123 TYR A 152 1 30 HELIX 11 11 ASN A 156 GLY A 185 1 30 HELIX 12 12 LYS A 186 LYS A 209 1 24 HELIX 13 13 CYS B 352 ILE B 356 1 5 HELIX 14 14 ILE B 356 GLN B 367 1 12 HELIX 15 15 ASN B 371 CYS B 392 1 22 HELIX 16 16 GLY B 394 CYS B 410 1 17 HELIX 17 17 SER C 16 VAL C 18 5 3 HELIX 18 18 SER C 19 VAL C 25 1 7 HELIX 19 19 VAL C 25 GLU C 34 1 10 HELIX 20 20 ASN C 37 ASN C 55 1 19 HELIX 21 21 GLY C 57 LYS C 70 1 14 HELIX 22 22 ASN C 75 MET C 83 1 9 HELIX 23 23 ALA C 84 ASP C 86 5 3 HELIX 24 24 ASP C 87 MET C 92 1 6 HELIX 25 25 GLU C 97 LYS C 116 1 20 HELIX 26 26 LYS C 116 ILE C 121 1 6 HELIX 27 27 ASP C 123 TYR C 152 1 30 HELIX 28 28 ASN C 156 GLY C 185 1 30 HELIX 29 29 LYS C 186 LYS C 209 1 24 HELIX 30 30 ASP D 345 SER D 351 1 7 HELIX 31 31 SER D 351 ILE D 356 1 6 HELIX 32 32 ILE D 356 GLN D 367 1 12 HELIX 33 33 ASN D 371 CYS D 392 1 22 HELIX 34 34 GLY D 394 LYS D 409 1 16 CRYST1 75.243 84.018 109.679 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013290 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009118 0.00000