HEADER CHAPERONE/CHAPERONE EFFECTOR 02-AUG-12 4GF3 TITLE STRUCTURE OF A SYCH-YOPH CHAPERONE-EFFECTOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE YOPH TARGETING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE YOPH TARGETING PROTEIN SYCH, YOPH CHAPERONE, YOPH COMPND 5 CHAPERONE SYCH PROTEIN HOMOLOG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE YOPH; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: VIRULENCE PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: SYCH, YP_PCD87, YPCD1.95C; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 7 ORGANISM_TAXID: 630; SOURCE 8 GENE: YOPH, YOP51 KEYWDS T3SS CHAPERONE, CHAPERONE-CHAPERONE EFFECTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.E.STEBBINS,M.VUJANAC REVDAT 3 28-FEB-24 4GF3 1 REMARK REVDAT 2 19-JUN-13 4GF3 1 JRNL REVDAT 1 27-MAR-13 4GF3 0 JRNL AUTH M.VUJANAC,C.E.STEBBINS JRNL TITL CONTEXT-DEPENDENT PROTEIN FOLDING OF A VIRULENCE PEPTIDE IN JRNL TITL 2 THE BACTERIAL AND HOST ENVIRONMENTS: STRUCTURE OF AN JRNL TITL 3 SYCH-YOPH CHAPERONE-EFFECTOR COMPLEX. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 546 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519663 JRNL DOI 10.1107/S0907444912051086 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1188 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1155 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1611 ; 1.890 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2654 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 148 ; 6.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;37.455 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 209 ;16.064 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.123 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 197 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1316 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 258 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0579 12.5912 10.8559 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0295 REMARK 3 T33: 0.0286 T12: 0.0043 REMARK 3 T13: 0.0305 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.7040 L22: 2.1990 REMARK 3 L33: 3.6533 L12: -0.2676 REMARK 3 L13: 1.3176 L23: -0.2334 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.2209 S13: -0.0483 REMARK 3 S21: 0.1283 S22: 0.0014 S23: -0.0512 REMARK 3 S31: 0.0163 S32: -0.2000 S33: 0.0470 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7279 29.2771 20.3147 REMARK 3 T TENSOR REMARK 3 T11: 0.4431 T22: 0.2833 REMARK 3 T33: 0.2542 T12: 0.0582 REMARK 3 T13: 0.0739 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 21.4288 L22: 22.5694 REMARK 3 L33: 8.8614 L12: -5.8460 REMARK 3 L13: 12.8958 L23: 1.2842 REMARK 3 S TENSOR REMARK 3 S11: -1.2255 S12: 0.1652 S13: 0.3414 REMARK 3 S21: 0.1740 S22: 1.2341 S23: -1.3651 REMARK 3 S31: -0.8311 S32: 0.3625 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1681 5.8936 15.9588 REMARK 3 T TENSOR REMARK 3 T11: 0.0251 T22: 0.0575 REMARK 3 T33: 0.0774 T12: -0.0005 REMARK 3 T13: 0.0207 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.1963 L22: 4.8424 REMARK 3 L33: 6.6716 L12: -0.4427 REMARK 3 L13: -1.4762 L23: 0.3025 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.1249 S13: -0.0775 REMARK 3 S21: 0.1779 S22: -0.0219 S23: -0.0564 REMARK 3 S31: 0.1438 S32: -0.0802 S33: 0.0544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0084 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.75850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.26250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.26250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.87925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.26250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.26250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.63775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.26250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.26250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.87925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.26250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.26250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.63775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.75850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 215 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 228 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 120 REMARK 465 CYS A 121 REMARK 465 GLU A 122 REMARK 465 PRO A 123 REMARK 465 THR A 124 REMARK 465 MET A 125 REMARK 465 LYS A 126 REMARK 465 LYS A 127 REMARK 465 GLU A 128 REMARK 465 GLU A 129 REMARK 465 ASP A 130 REMARK 465 ASP A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 138 REMARK 465 LEU A 139 REMARK 465 LEU A 140 REMARK 465 VAL A 141 REMARK 465 GLY B 21 REMARK 465 ASP B 22 REMARK 465 CYS B 23 REMARK 465 THR B 24 REMARK 465 GLY B 25 REMARK 465 LYS B 26 REMARK 465 LEU B 27 REMARK 465 ARG B 28 REMARK 465 GLY B 29 REMARK 465 ASN B 30 REMARK 465 VAL B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 ASN B 34 REMARK 465 LYS B 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 86 O HOH A 344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -165.83 -75.76 REMARK 500 LYS A 34 -15.14 66.10 REMARK 500 ALA A 54 -154.52 -107.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 4GF3 A 1 141 UNP Q7BTX0 Q7BTX0_YERPE 1 141 DBREF 4GF3 B 21 63 UNP P15273 YOPH_YEREN 21 63 SEQRES 1 A 141 MET ARG THR TYR SER SER LEU LEU GLU GLU PHE ALA THR SEQRES 2 A 141 GLU LEU GLY LEU GLU GLU ILE GLU THR ASN GLU LEU GLY SEQRES 3 A 141 HIS GLY ALA VAL THR ILE ASP LYS ILE TRP VAL VAL HIS SEQRES 4 A 141 LEU ALA PRO ILE ASN GLU LYS GLU LEU VAL ALA PHE MET SEQRES 5 A 141 ARG ALA GLY ILE LEU THR GLY GLN SER GLN LEU TYR ASP SEQRES 6 A 141 ILE LEU ARG LYS ASN LEU PHE SER PRO LEU SER GLY VAL SEQRES 7 A 141 ILE ARG CYS ALA LEU ASP LYS ASP ASP HIS TRP LEU LEU SEQRES 8 A 141 TRP SER GLN LEU ASN ILE ASN ASP THR SER GLY THR GLN SEQRES 9 A 141 LEU ALA SER VAL LEU THR SER LEU VAL ASP LYS ALA VAL SEQRES 10 A 141 THR LEU SER CYS GLU PRO THR MET LYS LYS GLU GLU ASP SEQRES 11 A 141 ASP HIS ARG PRO SER SER SER HIS LEU LEU VAL SEQRES 1 B 43 GLY ASP CYS THR GLY LYS LEU ARG GLY ASN VAL ALA ALA SEQRES 2 B 43 ASN LYS GLU THR THR PHE GLN GLY LEU THR ILE ALA SER SEQRES 3 B 43 GLY ALA ARG GLU SER GLU LYS VAL PHE ALA GLN THR VAL SEQRES 4 B 43 LEU SER HIS VAL FORMUL 3 HOH *186(H2 O) HELIX 1 1 THR A 3 GLY A 16 1 14 HELIX 2 2 GLY A 59 LYS A 69 1 11 HELIX 3 3 SER A 101 LEU A 119 1 19 HELIX 4 4 ARG B 49 VAL B 63 1 15 SHEET 1 A 7 ARG A 80 LEU A 83 0 SHEET 2 A 7 HIS A 88 ASN A 96 -1 O TRP A 92 N ARG A 80 SHEET 3 A 7 GLU A 47 ILE A 56 -1 N ALA A 54 O TRP A 89 SHEET 4 A 7 TRP A 36 PRO A 42 -1 N HIS A 39 O PHE A 51 SHEET 5 A 7 GLY A 28 ILE A 32 -1 N ILE A 32 O TRP A 36 SHEET 6 A 7 LEU B 42 SER B 46 -1 O ALA B 45 N THR A 31 SHEET 7 A 7 THR B 37 PHE B 39 -1 N PHE B 39 O LEU B 42 CRYST1 70.525 70.525 71.517 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013983 0.00000