HEADER BIOTIN BINDING PROTEIN 07-AUG-12 4GGZ TITLE THE STRUCTURE OF BRADAVIDIN2-BIOTIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRADAVIDIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 19-130; COMPND 5 SYNONYM: BLL1558 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM JAPONICUM; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA 110; SOURCE 5 GENE: BLL1558; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BRADAVIDIN, AVIDIN, OLIGOMERIC STATE, STREPTAVIDIN, HIGH AFFINITY KEYWDS 2 SYSTEMS, LIPOCALIN FOLD, BETA BARREL, BIOTIN BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,A.MEIR REVDAT 3 13-SEP-23 4GGZ 1 REMARK SEQADV REVDAT 2 10-JUL-13 4GGZ 1 JRNL REVDAT 1 19-JUN-13 4GGZ 0 JRNL AUTH J.LEPPINIEMI,A.MEIR,N.KAHKONEN,S.KUKKURAINEN,J.A.MAATTA, JRNL AUTH 2 M.OJANEN,J.JANIS,M.S.KULOMAA,O.LIVNAH,V.P.HYTONEN JRNL TITL THE HIGHLY DYNAMIC OLIGOMERIC STRUCTURE OF BRADAVIDIN II IS JRNL TITL 2 UNIQUE AMONG AVIDIN PROTEINS. JRNL REF PROTEIN SCI. V. 22 980 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 23661323 JRNL DOI 10.1002/PRO.2281 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3671 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5075 ; 1.670 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 5.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;33.115 ;23.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;15.927 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2864 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1547 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2467 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 357 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2262 ; 0.995 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3621 ; 1.631 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 2.533 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 3.484 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 71.839 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG20000, 2% 1,4-DIOXANE, 0.1 M REMARK 280 BICINE, PH 9.0, LIQUID DIFFUSION, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.53350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.71700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.53350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.71700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -2 REMARK 465 THR A -1 REMARK 465 VAL A 0 REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 GLN B -2 REMARK 465 THR B -1 REMARK 465 VAL B 0 REMARK 465 GLU B 1 REMARK 465 ALA B 2 REMARK 465 MET B 3 REMARK 465 ALA B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 GLN C -2 REMARK 465 THR C -1 REMARK 465 VAL C 0 REMARK 465 GLU C 1 REMARK 465 ALA C 2 REMARK 465 MET C 3 REMARK 465 ALA C 4 REMARK 465 GLN C 5 REMARK 465 GLY C 6 REMARK 465 GLN D -2 REMARK 465 THR D -1 REMARK 465 VAL D 0 REMARK 465 GLU D 1 REMARK 465 ALA D 2 REMARK 465 MET D 3 REMARK 465 ALA D 4 REMARK 465 GLN D 5 REMARK 465 GLY D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1028 O HOH A 1110 2.10 REMARK 500 O HOH D 1006 O HOH D 1079 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 14 OE1 GLN B 40 1554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 -169.59 -101.48 REMARK 500 ALA B 43 -163.29 -106.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN C 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN D 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y32 RELATED DB: PDB REMARK 900 RELATED ID: 4GGR RELATED DB: PDB REMARK 900 RELATED ID: 4GGT RELATED DB: PDB DBREF 4GGZ A 1 112 UNP Q89U61 Q89U61_BRAJA 19 130 DBREF 4GGZ B 1 112 UNP Q89U61 Q89U61_BRAJA 19 130 DBREF 4GGZ C 1 112 UNP Q89U61 Q89U61_BRAJA 19 130 DBREF 4GGZ D 1 112 UNP Q89U61 Q89U61_BRAJA 19 130 SEQADV 4GGZ GLN A -2 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ THR A -1 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ VAL A 0 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ GLN B -2 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ THR B -1 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ VAL B 0 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ GLN C -2 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ THR C -1 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ VAL C 0 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ GLN D -2 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ THR D -1 UNP Q89U61 EXPRESSION TAG SEQADV 4GGZ VAL D 0 UNP Q89U61 EXPRESSION TAG SEQRES 1 A 115 GLN THR VAL GLU ALA MET ALA GLN GLY LEU PRO ALA PRO SEQRES 2 A 115 SER TYR TRP LYS ASN GLU ARG GLY SER GLU LEU LEU ILE SEQRES 3 A 115 TRP SER ALA ASN SER GLY THR ILE GLN GLY THR PHE THR SEQRES 4 A 115 ASN HIS ALA GLN GLY PHE ALA CYS GLN GLY ILE PRO TYR SEQRES 5 A 115 PRO ALA ALA GLY SER VAL SER PRO THR GLY LEU TYR PHE SEQRES 6 A 115 VAL VAL THR PHE ALA GLN CYS ASN SER PHE THR ARG TRP SEQRES 7 A 115 VAL GLY THR ILE LYS GLY SER GLN MET PRO THR SER TRP SEQRES 8 A 115 THR LEU PHE TYR VAL ASP ASN LYS GLY LYS PRO SER ARG SEQRES 9 A 115 LEU LYS GLY GLY ASP ILE PHE THR ARG VAL TRP SEQRES 1 B 115 GLN THR VAL GLU ALA MET ALA GLN GLY LEU PRO ALA PRO SEQRES 2 B 115 SER TYR TRP LYS ASN GLU ARG GLY SER GLU LEU LEU ILE SEQRES 3 B 115 TRP SER ALA ASN SER GLY THR ILE GLN GLY THR PHE THR SEQRES 4 B 115 ASN HIS ALA GLN GLY PHE ALA CYS GLN GLY ILE PRO TYR SEQRES 5 B 115 PRO ALA ALA GLY SER VAL SER PRO THR GLY LEU TYR PHE SEQRES 6 B 115 VAL VAL THR PHE ALA GLN CYS ASN SER PHE THR ARG TRP SEQRES 7 B 115 VAL GLY THR ILE LYS GLY SER GLN MET PRO THR SER TRP SEQRES 8 B 115 THR LEU PHE TYR VAL ASP ASN LYS GLY LYS PRO SER ARG SEQRES 9 B 115 LEU LYS GLY GLY ASP ILE PHE THR ARG VAL TRP SEQRES 1 C 115 GLN THR VAL GLU ALA MET ALA GLN GLY LEU PRO ALA PRO SEQRES 2 C 115 SER TYR TRP LYS ASN GLU ARG GLY SER GLU LEU LEU ILE SEQRES 3 C 115 TRP SER ALA ASN SER GLY THR ILE GLN GLY THR PHE THR SEQRES 4 C 115 ASN HIS ALA GLN GLY PHE ALA CYS GLN GLY ILE PRO TYR SEQRES 5 C 115 PRO ALA ALA GLY SER VAL SER PRO THR GLY LEU TYR PHE SEQRES 6 C 115 VAL VAL THR PHE ALA GLN CYS ASN SER PHE THR ARG TRP SEQRES 7 C 115 VAL GLY THR ILE LYS GLY SER GLN MET PRO THR SER TRP SEQRES 8 C 115 THR LEU PHE TYR VAL ASP ASN LYS GLY LYS PRO SER ARG SEQRES 9 C 115 LEU LYS GLY GLY ASP ILE PHE THR ARG VAL TRP SEQRES 1 D 115 GLN THR VAL GLU ALA MET ALA GLN GLY LEU PRO ALA PRO SEQRES 2 D 115 SER TYR TRP LYS ASN GLU ARG GLY SER GLU LEU LEU ILE SEQRES 3 D 115 TRP SER ALA ASN SER GLY THR ILE GLN GLY THR PHE THR SEQRES 4 D 115 ASN HIS ALA GLN GLY PHE ALA CYS GLN GLY ILE PRO TYR SEQRES 5 D 115 PRO ALA ALA GLY SER VAL SER PRO THR GLY LEU TYR PHE SEQRES 6 D 115 VAL VAL THR PHE ALA GLN CYS ASN SER PHE THR ARG TRP SEQRES 7 D 115 VAL GLY THR ILE LYS GLY SER GLN MET PRO THR SER TRP SEQRES 8 D 115 THR LEU PHE TYR VAL ASP ASN LYS GLY LYS PRO SER ARG SEQRES 9 D 115 LEU LYS GLY GLY ASP ILE PHE THR ARG VAL TRP HET BTN A 900 16 HET BTN B 900 16 HET BTN C 900 16 HET BTN D 900 16 HETNAM BTN BIOTIN FORMUL 5 BTN 4(C10 H16 N2 O3 S) FORMUL 9 HOH *404(H2 O) HELIX 1 1 ALA A 26 SER A 28 5 3 HELIX 2 2 ALA A 67 CYS A 69 5 3 HELIX 3 3 ALA B 26 SER B 28 5 3 HELIX 4 4 ALA B 67 CYS B 69 5 3 HELIX 5 5 ALA C 26 SER C 28 5 3 HELIX 6 6 ALA C 67 ASN C 70 5 4 HELIX 7 7 ALA D 26 SER D 28 5 3 HELIX 8 8 ALA D 67 ASN D 70 5 4 SHEET 1 A 9 SER A 11 ASN A 15 0 SHEET 2 A 9 GLU A 20 SER A 25 -1 O LEU A 21 N TRP A 13 SHEET 3 A 9 THR A 30 THR A 36 -1 O THR A 34 N LEU A 22 SHEET 4 A 9 PRO A 48 SER A 56 -1 O TYR A 49 N PHE A 35 SHEET 5 A 9 GLY A 59 PHE A 66 -1 O VAL A 63 N ALA A 52 SHEET 6 A 9 SER A 71 GLY A 77 -1 O TRP A 75 N PHE A 62 SHEET 7 A 9 GLN A 83 VAL A 93 -1 O PHE A 91 N PHE A 72 SHEET 8 A 9 PRO A 99 ARG A 110 -1 O SER A 100 N TYR A 92 SHEET 9 A 9 SER A 11 ASN A 15 -1 N LYS A 14 O THR A 109 SHEET 1 B 9 SER B 11 ASN B 15 0 SHEET 2 B 9 GLU B 20 SER B 25 -1 O ILE B 23 N SER B 11 SHEET 3 B 9 THR B 30 THR B 36 -1 O THR B 34 N LEU B 22 SHEET 4 B 9 PRO B 48 SER B 56 -1 O TYR B 49 N PHE B 35 SHEET 5 B 9 GLY B 59 PHE B 66 -1 O VAL B 63 N ALA B 52 SHEET 6 B 9 SER B 71 GLY B 77 -1 O TRP B 75 N PHE B 62 SHEET 7 B 9 GLN B 83 VAL B 93 -1 O PHE B 91 N PHE B 72 SHEET 8 B 9 PRO B 99 ARG B 110 -1 O SER B 100 N TYR B 92 SHEET 9 B 9 SER B 11 ASN B 15 -1 N LYS B 14 O THR B 109 SHEET 1 C 9 SER C 11 ASN C 15 0 SHEET 2 C 9 GLU C 20 SER C 25 -1 O LEU C 21 N TRP C 13 SHEET 3 C 9 THR C 30 THR C 36 -1 O THR C 34 N LEU C 22 SHEET 4 C 9 PRO C 48 SER C 56 -1 O TYR C 49 N PHE C 35 SHEET 5 C 9 GLY C 59 PHE C 66 -1 O VAL C 63 N ALA C 52 SHEET 6 C 9 SER C 71 GLY C 77 -1 O TRP C 75 N PHE C 62 SHEET 7 C 9 GLN C 83 VAL C 93 -1 O PHE C 91 N PHE C 72 SHEET 8 C 9 PRO C 99 ARG C 110 -1 O LEU C 102 N LEU C 90 SHEET 9 C 9 SER C 11 ASN C 15 -1 N LYS C 14 O THR C 109 SHEET 1 D 9 SER D 11 ASN D 15 0 SHEET 2 D 9 GLU D 20 SER D 25 -1 O LEU D 21 N TRP D 13 SHEET 3 D 9 THR D 30 THR D 36 -1 O THR D 34 N LEU D 22 SHEET 4 D 9 PRO D 48 SER D 56 -1 O TYR D 49 N PHE D 35 SHEET 5 D 9 GLY D 59 PHE D 66 -1 O VAL D 63 N ALA D 52 SHEET 6 D 9 SER D 71 GLY D 77 -1 O TRP D 75 N PHE D 62 SHEET 7 D 9 GLN D 83 VAL D 93 -1 O PHE D 91 N PHE D 72 SHEET 8 D 9 PRO D 99 ARG D 110 -1 O SER D 100 N TYR D 92 SHEET 9 D 9 SER D 11 ASN D 15 -1 N LYS D 14 O THR D 109 SSBOND 1 CYS A 44 CYS A 69 1555 1555 2.11 SSBOND 2 CYS B 44 CYS B 69 1555 1555 2.12 SSBOND 3 CYS C 44 CYS C 69 1555 1555 2.10 SSBOND 4 CYS D 44 CYS D 69 1555 1555 2.10 CISPEP 1 ALA A 9 PRO A 10 0 -2.35 CISPEP 2 ALA B 9 PRO B 10 0 0.38 CISPEP 3 ALA C 9 PRO C 10 0 -3.15 CISPEP 4 ALA D 9 PRO D 10 0 -2.66 SITE 1 AC1 16 ASN A 15 ARG A 17 SER A 19 PHE A 35 SITE 2 AC1 16 ASN A 37 ALA A 39 ALA A 43 PHE A 66 SITE 3 AC1 16 CYS A 69 SER A 71 THR A 73 TRP A 75 SITE 4 AC1 16 TRP A 88 ASP A 106 HOH A1030 LYS D 96 SITE 1 AC2 17 ASN B 15 SER B 19 PHE B 35 ASN B 37 SITE 2 AC2 17 ALA B 39 PHE B 42 ALA B 43 PHE B 66 SITE 3 AC2 17 CYS B 69 SER B 71 THR B 73 TRP B 75 SITE 4 AC2 17 TRP B 88 LEU B 90 ASP B 106 HOH B1057 SITE 5 AC2 17 LYS C 96 SITE 1 AC3 16 LYS B 96 ASN C 15 ARG C 17 SER C 19 SITE 2 AC3 16 PHE C 35 ASN C 37 ALA C 39 ALA C 43 SITE 3 AC3 16 PHE C 66 CYS C 69 SER C 71 THR C 73 SITE 4 AC3 16 TRP C 75 TRP C 88 ASP C 106 HOH C1029 SITE 1 AC4 16 LYS A 96 ASN D 15 ARG D 17 SER D 19 SITE 2 AC4 16 PHE D 35 ASN D 37 ALA D 39 ALA D 43 SITE 3 AC4 16 PHE D 66 CYS D 69 SER D 71 THR D 73 SITE 4 AC4 16 TRP D 75 TRP D 88 ASP D 106 HOH D1023 CRYST1 119.067 95.434 49.947 90.00 113.58 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008399 0.000000 0.003666 0.00000 SCALE2 0.000000 0.010478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021845 0.00000