HEADER TRANSCRIPTION 07-AUG-12 4GHJ TITLE 1.75 ANGSTROM CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR FTOM TITLE 2 VIBRIO VULNIFICUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 STRAIN: CMCP6; SOURCE 5 GENE: VV1_2191; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, HELIX-TURN-HELIX XRE-FAMILY LIKE PROTEINS, KEYWDS 4 TRANSCRIPTIONAL REGULATOR, DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,S.GRIMSHAW,L.PAPAZISI, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 15-NOV-17 4GHJ 1 REMARK REVDAT 1 15-AUG-12 4GHJ 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,S.GRIMSHAW, JRNL AUTH 2 L.PAPAZISI,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.75 ANGSTROM CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR JRNL TITL 2 FTOM VIBRIO VULNIFICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 15662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.88000 REMARK 3 B22 (A**2) : 4.40000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1272 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 862 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1726 ; 1.227 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2147 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 2.887 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;29.073 ;26.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 264 ; 9.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 210 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1433 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 219 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 816 ; 1.158 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 325 ; 0.398 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1326 ; 1.904 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 456 ; 3.176 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 400 ; 5.193 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0830 12.5958 53.9836 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.2692 REMARK 3 T33: 0.1689 T12: 0.0012 REMARK 3 T13: -0.0111 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.4170 L22: 1.3568 REMARK 3 L33: 5.0444 L12: -0.0305 REMARK 3 L13: 0.4504 L23: -2.2352 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.4506 S13: -0.0718 REMARK 3 S21: 0.0875 S22: -0.0438 S23: -0.1930 REMARK 3 S31: 0.1166 S32: 0.2436 S33: 0.1120 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7806 11.3281 41.8837 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1577 REMARK 3 T33: 0.1940 T12: -0.0096 REMARK 3 T13: 0.0083 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 5.6467 L22: 1.2396 REMARK 3 L33: 7.0002 L12: 0.9002 REMARK 3 L13: 0.1933 L23: 0.6385 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.2307 S13: -0.1300 REMARK 3 S21: 0.2369 S22: -0.2189 S23: -0.1374 REMARK 3 S31: -0.2020 S32: 0.3098 S33: 0.1646 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4647 15.5074 30.2267 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.1143 REMARK 3 T33: 0.0539 T12: -0.0046 REMARK 3 T13: 0.0096 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.2559 L22: 3.4246 REMARK 3 L33: 3.1876 L12: 0.7022 REMARK 3 L13: -0.7536 L23: -0.7189 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: 0.5204 S13: -0.1114 REMARK 3 S21: -0.0530 S22: -0.1377 S23: -0.0732 REMARK 3 S31: 0.0475 S32: -0.0456 S33: 0.0627 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2515 22.4649 39.7943 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.1672 REMARK 3 T33: 0.2999 T12: -0.0135 REMARK 3 T13: 0.0646 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.2064 L22: 3.5475 REMARK 3 L33: 4.2332 L12: -0.0265 REMARK 3 L13: 2.1205 L23: -1.3211 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.1678 S13: 0.1507 REMARK 3 S21: 0.1931 S22: -0.0155 S23: -0.2358 REMARK 3 S31: -0.3881 S32: 0.2420 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8158 12.2701 35.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0726 REMARK 3 T33: 0.0536 T12: 0.0015 REMARK 3 T13: -0.0203 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 6.1213 L22: 6.5725 REMARK 3 L33: 4.3383 L12: -1.8386 REMARK 3 L13: -2.5780 L23: 2.6098 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.3838 S13: -0.3356 REMARK 3 S21: 0.0362 S22: -0.0632 S23: 0.1799 REMARK 3 S31: 0.0755 S32: -0.2030 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7280 5.1941 44.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.0180 REMARK 3 T33: 0.3514 T12: -0.0435 REMARK 3 T13: 0.0040 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 11.3936 L22: 7.0978 REMARK 3 L33: 15.3816 L12: -7.0223 REMARK 3 L13: -8.8743 L23: -0.5863 REMARK 3 S TENSOR REMARK 3 S11: -0.3174 S12: 0.3060 S13: -0.3095 REMARK 3 S21: -0.0736 S22: 0.0439 S23: 0.3283 REMARK 3 S31: 0.6282 S32: -0.5155 S33: 0.2736 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6394 12.8485 37.1623 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.3219 REMARK 3 T33: 0.1744 T12: 0.0042 REMARK 3 T13: 0.0080 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.9498 L22: 0.7922 REMARK 3 L33: 8.5468 L12: -1.0389 REMARK 3 L13: -0.2407 L23: 1.8152 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.2016 S13: -0.1175 REMARK 3 S21: 0.0590 S22: -0.2326 S23: 0.1572 REMARK 3 S31: 0.4723 S32: -0.8401 S33: 0.1836 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9206 12.3647 55.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.1235 REMARK 3 T33: 0.0460 T12: 0.0046 REMARK 3 T13: 0.0151 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 4.9346 L22: 3.0440 REMARK 3 L33: 4.7070 L12: -0.3531 REMARK 3 L13: -1.1154 L23: -0.2683 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: -0.2309 S13: -0.3231 REMARK 3 S21: -0.0122 S22: 0.0789 S23: 0.1387 REMARK 3 S31: 0.3137 S32: -0.2869 S33: 0.0509 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8587 22.2374 58.3125 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.2937 REMARK 3 T33: 0.1093 T12: -0.0016 REMARK 3 T13: 0.0066 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 3.7366 L22: 6.1850 REMARK 3 L33: 10.9339 L12: -0.9585 REMARK 3 L13: -2.0938 L23: -1.0913 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.8611 S13: 0.4305 REMARK 3 S21: 0.0903 S22: 0.2122 S23: 0.0235 REMARK 3 S31: -0.5462 S32: 0.0126 S33: -0.1679 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9287 21.0374 48.0134 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1120 REMARK 3 T33: 0.0917 T12: 0.0259 REMARK 3 T13: 0.0035 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 12.2357 L22: 2.4490 REMARK 3 L33: 0.6503 L12: -0.8799 REMARK 3 L13: 2.7585 L23: -0.1066 REMARK 3 S TENSOR REMARK 3 S11: -0.0698 S12: -0.1439 S13: 0.3406 REMARK 3 S21: -0.1088 S22: -0.0182 S23: 0.1174 REMARK 3 S31: -0.0733 S32: -0.0302 S33: 0.0880 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0701 11.5331 54.8916 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.0918 REMARK 3 T33: 0.0514 T12: -0.0122 REMARK 3 T13: -0.0030 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 3.9068 L22: 5.9883 REMARK 3 L33: 5.4658 L12: 0.0788 REMARK 3 L13: -0.8428 L23: -1.4914 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.5093 S13: -0.2571 REMARK 3 S21: 0.0989 S22: -0.1195 S23: 0.1416 REMARK 3 S31: 0.0991 S32: 0.1207 S33: 0.0569 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9098 5.0117 44.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0087 REMARK 3 T33: 0.1643 T12: -0.0024 REMARK 3 T13: -0.0071 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 10.4947 L22: 6.4957 REMARK 3 L33: 12.5170 L12: -1.1909 REMARK 3 L13: -9.7160 L23: 0.6140 REMARK 3 S TENSOR REMARK 3 S11: -0.2883 S12: -0.0717 S13: -0.3189 REMARK 3 S21: 0.0278 S22: 0.1526 S23: -0.2838 REMARK 3 S31: 0.4132 S32: 0.0759 S33: 0.1358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.6MG/ML, 0.5M SODIUM REMARK 280 CLORIDE, 0.01M TRIS-HCL PH 8.3; SCREEN: PACT (D6), 0.1M MMT REMARK 280 BUFFER PH 9.0, 25% (W/V) PEG 1500, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.87100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.87100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 75 REMARK 465 GLU A 76 REMARK 465 ILE A 77 REMARK 465 MSE B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 72 51.16 35.17 REMARK 500 ILE A 72 59.93 35.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP91375 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE INITIAL SEQUENCE WAS CUT AFTER RESIDUE 77 OR MAYBE FEW RESIDUES REMARK 999 AFTER DBREF 4GHJ A 1 77 UNP Q8DAK3 Q8DAK3_VIBVU 1 77 DBREF 4GHJ B 1 77 UNP Q8DAK3 Q8DAK3_VIBVU 1 77 SEQADV 4GHJ MSE A -23 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS A -22 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS A -21 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS A -20 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS A -19 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS A -18 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS A -17 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ SER A -16 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ SER A -15 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLY A -14 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ VAL A -13 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ASP A -12 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ LEU A -11 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLY A -10 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ THR A -9 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLU A -8 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ASN A -7 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ LEU A -6 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ TYR A -5 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ PHE A -4 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLN A -3 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ SER A -2 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ASN A -1 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ALA A 0 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ MSE B -23 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS B -22 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS B -21 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS B -20 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS B -19 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS B -18 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ HIS B -17 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ SER B -16 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ SER B -15 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLY B -14 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ VAL B -13 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ASP B -12 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ LEU B -11 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLY B -10 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ THR B -9 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLU B -8 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ASN B -7 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ LEU B -6 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ TYR B -5 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ PHE B -4 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ GLN B -3 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ SER B -2 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ASN B -1 UNP Q8DAK3 EXPRESSION TAG SEQADV 4GHJ ALA B 0 UNP Q8DAK3 EXPRESSION TAG SEQRES 1 A 101 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 101 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MSE LYS SEQRES 3 A 101 HIS VAL THR ALA ALA ALA LEU ALA GLU GLU ILE GLY ASP SEQRES 4 A 101 ARG LEU LYS GLN ALA ARG LEU ASN ARG ASP LEU THR GLN SEQRES 5 A 101 SER GLU VAL ALA GLU ILE ALA GLY ILE ALA ARG LYS THR SEQRES 6 A 101 VAL LEU ASN ALA GLU LYS GLY LYS VAL GLN LEU ASP ILE SEQRES 7 A 101 MSE ILE ALA ILE LEU MSE ALA LEU ASP LEU THR GLU GLN SEQRES 8 A 101 ILE ASP LEU PHE ILE PRO LYS GLN GLU ILE SEQRES 1 B 101 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 101 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MSE LYS SEQRES 3 B 101 HIS VAL THR ALA ALA ALA LEU ALA GLU GLU ILE GLY ASP SEQRES 4 B 101 ARG LEU LYS GLN ALA ARG LEU ASN ARG ASP LEU THR GLN SEQRES 5 B 101 SER GLU VAL ALA GLU ILE ALA GLY ILE ALA ARG LYS THR SEQRES 6 B 101 VAL LEU ASN ALA GLU LYS GLY LYS VAL GLN LEU ASP ILE SEQRES 7 B 101 MSE ILE ALA ILE LEU MSE ALA LEU ASP LEU THR GLU GLN SEQRES 8 B 101 ILE ASP LEU PHE ILE PRO LYS GLN GLU ILE MODRES 4GHJ MSE A 55 MET SELENOMETHIONINE MODRES 4GHJ MSE A 60 MET SELENOMETHIONINE MODRES 4GHJ MSE B 55 MET SELENOMETHIONINE MODRES 4GHJ MSE B 60 MET SELENOMETHIONINE HET MSE A 55 16 HET MSE A 60 16 HET MSE B 55 8 HET MSE B 60 16 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *149(H2 O) HELIX 1 1 THR A 5 ARG A 24 1 20 HELIX 2 2 THR A 27 GLY A 36 1 10 HELIX 3 3 ALA A 38 LYS A 47 1 10 HELIX 4 4 GLN A 51 LEU A 62 1 12 HELIX 5 5 THR A 65 PHE A 71 5 7 HELIX 6 6 THR B 5 ARG B 24 1 20 HELIX 7 7 THR B 27 GLY B 36 1 10 HELIX 8 8 ALA B 38 GLU B 46 1 9 HELIX 9 9 GLN B 51 LEU B 62 1 12 HELIX 10 10 LEU B 64 PHE B 71 5 8 LINK C ILE A 54 N AMSE A 55 1555 1555 1.34 LINK C ILE A 54 N BMSE A 55 1555 1555 1.33 LINK C AMSE A 55 N ILE A 56 1555 1555 1.33 LINK C BMSE A 55 N ILE A 56 1555 1555 1.33 LINK C LEU A 59 N AMSE A 60 1555 1555 1.32 LINK C LEU A 59 N BMSE A 60 1555 1555 1.33 LINK C AMSE A 60 N ALA A 61 1555 1555 1.33 LINK C BMSE A 60 N ALA A 61 1555 1555 1.33 LINK C ILE B 54 N MSE B 55 1555 1555 1.34 LINK C MSE B 55 N ILE B 56 1555 1555 1.33 LINK C LEU B 59 N AMSE B 60 1555 1555 1.33 LINK C LEU B 59 N BMSE B 60 1555 1555 1.34 LINK C AMSE B 60 N ALA B 61 1555 1555 1.34 LINK C BMSE B 60 N ALA B 61 1555 1555 1.33 CRYST1 63.742 70.740 35.746 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027975 0.00000