HEADER LIPID TRANSPORT 08-AUG-12 4GHS TITLE CRYSTAL STRUCTURE OF HUMAN GLTP BOUND WITH 12:0 DISULFATIDE TITLE 2 (ORTHOROMBIC FORM; TWO SUBUNITS IN ASYMMETRIC UNIT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOLIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLTP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLTP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLTP-FOLD, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR V.R.SAMYGINA,A.N.POPOV,F.GONI-DE-CERIO,A.CABO-BILBAO,L.MALININA REVDAT 2 08-NOV-23 4GHS 1 REMARK REVDAT 1 12-JUN-13 4GHS 0 JRNL AUTH V.R.SAMYGINA,B.OCHOA-LIZARRALDE,A.N.POPOV,A.CABO-BILBAO, JRNL AUTH 2 F.GONI-DE-CERIO,J.G.MOLOTKOVSKY,D.J.PATEL,R.E.BROWN, JRNL AUTH 3 L.MALININA JRNL TITL STRUCTURAL INSIGHTS INTO LIPID-DEPENDENT REVERSIBLE JRNL TITL 2 DIMERIZATION OF HUMAN GLTP. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 603 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519669 JRNL DOI 10.1107/S0907444913000024 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 10110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 511 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.74000 REMARK 3 B22 (A**2) : -2.29000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.528 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.406 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 52.007 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3522 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2442 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4766 ; 1.919 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6004 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 7.446 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;40.518 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;21.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3736 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 668 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.265 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 0.704 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 826 ; 0.086 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3376 ; 1.338 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 1.576 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1390 ; 2.804 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 209 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8117 7.1773 -27.2722 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.1781 REMARK 3 T33: 0.2503 T12: 0.0025 REMARK 3 T13: 0.0898 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: -0.0035 L22: 4.5605 REMARK 3 L33: 1.3937 L12: -0.7827 REMARK 3 L13: -0.2350 L23: 0.2648 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.0451 S13: 0.0834 REMARK 3 S21: 0.5305 S22: 0.0646 S23: 0.0296 REMARK 3 S31: 0.1440 S32: 0.0637 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 209 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4867 -7.1256 -53.1675 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.3433 REMARK 3 T33: 0.1593 T12: 0.0588 REMARK 3 T13: 0.0684 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 2.3131 L22: 1.9288 REMARK 3 L33: 0.7439 L12: -1.4798 REMARK 3 L13: -0.7580 L23: 0.4102 REMARK 3 S TENSOR REMARK 3 S11: 0.5978 S12: 0.2035 S13: 0.1002 REMARK 3 S21: -0.5593 S22: -0.5458 S23: -0.0153 REMARK 3 S31: -0.1645 S32: 0.1516 S33: -0.0519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER AXS MICROSTAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10751 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3RZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.47400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.39950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.39950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.47400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 196 CG GLU B 196 CD 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 152 CA - CB - CG ANGL. DEV. = 19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 7 64.88 -103.97 REMARK 500 PHE A 33 -53.98 -27.48 REMARK 500 ASN A 63 78.29 -160.69 REMARK 500 LEU A 152 26.38 -69.64 REMARK 500 GLN A 169 -66.01 12.73 REMARK 500 ASN A 170 89.13 102.78 REMARK 500 VAL A 171 135.50 -172.12 REMARK 500 THR A 172 163.26 -45.40 REMARK 500 LYS B 10 171.50 -38.55 REMARK 500 PHE B 33 -74.98 -19.64 REMARK 500 ASP B 61 -38.56 -39.35 REMARK 500 ASN B 63 60.24 179.20 REMARK 500 PRO B 64 -2.16 -56.76 REMARK 500 ALA B 83 -38.72 -28.38 REMARK 500 PHE B 107 -70.47 -40.02 REMARK 500 HIS B 120 96.03 -166.67 REMARK 500 SER B 159 -72.30 -41.72 REMARK 500 GLN B 169 7.79 -69.00 REMARK 500 ASN B 170 31.40 75.07 REMARK 500 VAL B 185 -75.53 -56.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 82 ALA A 83 143.11 REMARK 500 LEU B 3 LEU B 4 -146.93 REMARK 500 ALA B 5 GLU B 6 149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0SG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0SG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GH0 RELATED DB: PDB REMARK 900 RELATED ID: 4GHP RELATED DB: PDB DBREF 4GHS A 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 DBREF 4GHS B 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 SEQRES 1 A 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 A 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 A 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 A 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 A 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 A 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 A 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 A 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 A 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 A 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 A 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 A 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 A 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 A 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 A 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 A 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 A 209 VAL SEQRES 1 B 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 B 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 B 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 B 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 B 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 B 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 B 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 B 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 B 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 B 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 B 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 B 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 B 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 B 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 B 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 B 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 B 209 VAL HET 0SG A 301 53 HET 0SG B 301 53 HETNAM 0SG N-{(2S,3R,4E)-1-[(3,6-DI-O-SULFO-BETA-D- HETNAM 2 0SG GALACTOPYRANOSYL)OXY]-3-HYDROXYOCTADEC-4-EN-2- HETNAM 3 0SG YL}DODECANAMIDE FORMUL 3 0SG 2(C36 H69 N O14 S2) HELIX 1 1 LEU A 3 HIS A 7 5 5 HELIX 2 2 GLU A 19 SER A 28 1 10 HELIX 3 3 HIS A 29 PRO A 31 5 3 HELIX 4 4 PRO A 32 GLY A 38 1 7 HELIX 5 5 SER A 39 VAL A 41 5 3 HELIX 6 6 PHE A 42 ASN A 63 1 22 HELIX 7 7 THR A 69 TYR A 81 1 13 HELIX 8 8 VAL A 88 ASP A 113 1 26 HELIX 9 9 ILE A 124 LEU A 136 1 13 HELIX 10 10 LYS A 137 HIS A 140 5 4 HELIX 11 11 GLY A 141 LEU A 152 1 12 HELIX 12 12 TYR A 157 SER A 166 1 10 HELIX 13 13 THR A 172 MET A 201 1 30 HELIX 14 14 LEU B 3 HIS B 7 5 5 HELIX 15 15 THR B 20 SER B 28 1 9 HELIX 16 16 LEU B 30 ASP B 35 1 6 HELIX 17 17 CYS B 36 GLY B 38 5 3 HELIX 18 18 SER B 39 VAL B 41 5 3 HELIX 19 19 PHE B 42 THR B 62 1 21 HELIX 20 20 THR B 69 TYR B 81 1 13 HELIX 21 21 VAL B 88 CYS B 112 1 25 HELIX 22 22 ILE B 124 LEU B 136 1 13 HELIX 23 23 LYS B 137 HIS B 140 5 4 HELIX 24 24 GLY B 141 LEU B 152 1 12 HELIX 25 25 TYR B 157 LYS B 167 1 11 HELIX 26 26 THR B 172 ASN B 202 1 31 CISPEP 1 TRP A 85 PRO A 86 0 -0.46 CISPEP 2 TRP B 85 PRO B 86 0 19.89 SITE 1 AC1 18 LEU A 37 ILE A 45 ASP A 48 ASN A 52 SITE 2 AC1 18 LYS A 55 LYS A 87 ALA A 93 TRP A 96 SITE 3 AC1 18 PHE A 103 LEU A 136 HIS A 140 TYR A 207 SITE 4 AC1 18 PRO B 40 PRO B 44 ILE B 45 PHE B 148 SITE 5 AC1 18 ALA B 151 0SG B 301 SITE 1 AC2 21 VAL A 41 ILE A 45 HIS A 140 PHE A 148 SITE 2 AC2 21 0SG A 301 PHE B 34 PHE B 42 ILE B 45 SITE 3 AC2 21 ASP B 48 ASN B 52 LYS B 55 LYS B 87 SITE 4 AC2 21 LEU B 92 ALA B 93 TRP B 96 PHE B 103 SITE 5 AC2 21 LEU B 136 HIS B 140 ILE B 147 PHE B 148 SITE 6 AC2 21 TYR B 207 CRYST1 50.948 94.773 130.799 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007645 0.00000