HEADER HYDROLASE/HYDROLASE INHIBITOR 08-AUG-12 4GHT
TITLE CRYSTAL STRUCTURE OF EV71 3C PROTEINASE IN COMPLEX WITH AG7088
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 3C PROTEINASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 3.4.22.28;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS 71;
SOURCE 3 ORGANISM_TAXID: 39054;
SOURCE 4 STRAIN: E2004104-TW-CDC;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS HYDROLASE, CYSTEINE PROTEINASE, INHIBITOR, HYDROLASE-HYDROLASE
KEYWDS 2 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR C.CHEN,C.WU,Q.CAI,N.LI,X.PENG,Y.CAI,K.YIN,X.CHEN,X.WANG,R.ZHANG,
AUTHOR 2 L.LIU,S.CHEN,J.LI,T.LIN
REVDAT 3 13-NOV-24 4GHT 1 REMARK
REVDAT 2 08-NOV-23 4GHT 1 REMARK SEQADV LINK
REVDAT 1 26-JUN-13 4GHT 0
JRNL AUTH C.WU,Q.CAI,C.CHEN,N.LI,X.PENG,Y.CAI,K.YIN,X.CHEN,X.WANG,
JRNL AUTH 2 R.ZHANG,L.LIU,S.CHEN,J.LI,T.LIN
JRNL TITL STRUCTURES OF ENTEROVIRUS 71 3C PROTEINASE (STRAIN
JRNL TITL 2 E2004104-TW-CDC) AND ITS COMPLEX WITH RUPINTRIVIR
JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 866 2013
JRNL REFN ISSN 0907-4449
JRNL PMID 23633597
JRNL DOI 10.1107/S0907444913002862
REMARK 2
REMARK 2 RESOLUTION. 1.96 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0029
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 23014
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.209
REMARK 3 R VALUE (WORKING SET) : 0.205
REMARK 3 FREE R VALUE : 0.279
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1182
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1583
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2880
REMARK 3 BIN FREE R VALUE SET COUNT : 88
REMARK 3 BIN FREE R VALUE : 0.3380
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2802
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 86
REMARK 3 SOLVENT ATOMS : 194
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.16
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.01000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.233
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.047
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2948 ; 0.015 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2872 ; 0.006 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3994 ; 1.906 ; 1.990
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6588 ; 1.412 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.668 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.946 ;23.710
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;15.758 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.189 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.122 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3308 ; 0.009 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 676 ; 0.006 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NCS TYPE: LOCAL
REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1
REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT
REMARK 3 1 A 0 180 B 0 180 11048 0.130 0.050
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY
REMARK 4
REMARK 4 4GHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-12.
REMARK 100 THE DEPOSITION ID IS D_1000074200.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 08-AUG-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR
REMARK 200 DATA SCALING SOFTWARE : AUTOMAR
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23064
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.470
REMARK 200 R MERGE (I) : 0.11110
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 6.56
REMARK 200 R MERGE FOR SHELL (I) : 0.49260
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 4GHQ
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 32.36
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 25% PEG4000, 0.8M LITHIUM
REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.94250
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.90550
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.12700
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.90550
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.94250
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.12700
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 181
REMARK 465 GLU A 182
REMARK 465 GLN A 183
REMARK 465 LEU A 184
REMARK 465 GLU A 185
REMARK 465 HIS A 186
REMARK 465 HIS A 187
REMARK 465 HIS A 188
REMARK 465 HIS A 189
REMARK 465 HIS A 190
REMARK 465 HIS A 191
REMARK 465 SER B 181
REMARK 465 GLU B 182
REMARK 465 GLN B 183
REMARK 465 LEU B 184
REMARK 465 GLU B 185
REMARK 465 HIS B 186
REMARK 465 HIS B 187
REMARK 465 HIS B 188
REMARK 465 HIS B 189
REMARK 465 HIS B 190
REMARK 465 HIS B 191
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OD2 ASP A 5 O HOH A 396 3544 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 32 -122.24 48.19
REMARK 500 GLU A 50 -71.48 60.95
REMARK 500 SER A 111 58.53 37.43
REMARK 500 TYR A 122 -48.37 -133.85
REMARK 500 ASP B 32 -122.25 47.02
REMARK 500 GLU B 50 -75.95 61.45
REMARK 500 SER B 111 55.42 38.87
REMARK 500 TYR B 122 -47.95 -132.22
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 B 201
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4GHQ RELATED DB: PDB
REMARK 900 RELATED ID: 4GHV RELATED DB: PDB
REMARK 900 RELATED ID: 4GHX RELATED DB: PDB
REMARK 900 RELATED ID: 4GHY RELATED DB: PDB
REMARK 900 RELATED ID: 4GHZ RELATED DB: PDB
DBREF 4GHT A 1 183 UNP A9XG43 A9XG43_9ENTO 1549 1731
DBREF 4GHT B 1 183 UNP A9XG43 A9XG43_9ENTO 1549 1731
SEQADV 4GHT MET A 0 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT LEU A 184 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT GLU A 185 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS A 186 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS A 187 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS A 188 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS A 189 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS A 190 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS A 191 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT MET B 0 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT LEU B 184 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT GLU B 185 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS B 186 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS B 187 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS B 188 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS B 189 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS B 190 UNP A9XG43 EXPRESSION TAG
SEQADV 4GHT HIS B 191 UNP A9XG43 EXPRESSION TAG
SEQRES 1 A 192 MET GLY PRO SER LEU ASP PHE ALA LEU SER LEU LEU ARG
SEQRES 2 A 192 ARG ASN VAL ARG GLN VAL GLN THR ASP GLN GLY HIS PHE
SEQRES 3 A 192 THR MET LEU GLY VAL ARG ASP ARG LEU ALA VAL LEU PRO
SEQRES 4 A 192 ARG HIS SER GLN PRO GLY LYS THR ILE TRP ILE GLU HIS
SEQRES 5 A 192 LYS LEU VAL ASN ILE LEU ASP ALA VAL GLU LEU VAL ASP
SEQRES 6 A 192 GLU GLN GLY VAL ASN LEU GLU LEU THR LEU ILE THR LEU
SEQRES 7 A 192 ASP THR ASN GLU LYS PHE ARG ASP ILE THR LYS PHE ILE
SEQRES 8 A 192 PRO GLU ASN ILE SER THR ALA SER ASP ALA THR LEU VAL
SEQRES 9 A 192 ILE ASN THR GLU HIS MET PRO SER MET PHE VAL PRO VAL
SEQRES 10 A 192 GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN LEU SER GLY
SEQRES 11 A 192 LYS PRO THR HIS ARG THR MET MET TYR ASN PHE PRO THR
SEQRES 12 A 192 LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SER VAL GLY
SEQRES 13 A 192 LYS VAL ILE GLY ILE HIS ILE GLY GLY ASN GLY ARG GLN
SEQRES 14 A 192 GLY PHE CYS ALA GLY LEU LYS ARG SER TYR PHE ALA SER
SEQRES 15 A 192 GLU GLN LEU GLU HIS HIS HIS HIS HIS HIS
SEQRES 1 B 192 MET GLY PRO SER LEU ASP PHE ALA LEU SER LEU LEU ARG
SEQRES 2 B 192 ARG ASN VAL ARG GLN VAL GLN THR ASP GLN GLY HIS PHE
SEQRES 3 B 192 THR MET LEU GLY VAL ARG ASP ARG LEU ALA VAL LEU PRO
SEQRES 4 B 192 ARG HIS SER GLN PRO GLY LYS THR ILE TRP ILE GLU HIS
SEQRES 5 B 192 LYS LEU VAL ASN ILE LEU ASP ALA VAL GLU LEU VAL ASP
SEQRES 6 B 192 GLU GLN GLY VAL ASN LEU GLU LEU THR LEU ILE THR LEU
SEQRES 7 B 192 ASP THR ASN GLU LYS PHE ARG ASP ILE THR LYS PHE ILE
SEQRES 8 B 192 PRO GLU ASN ILE SER THR ALA SER ASP ALA THR LEU VAL
SEQRES 9 B 192 ILE ASN THR GLU HIS MET PRO SER MET PHE VAL PRO VAL
SEQRES 10 B 192 GLY ASP VAL VAL GLN TYR GLY PHE LEU ASN LEU SER GLY
SEQRES 11 B 192 LYS PRO THR HIS ARG THR MET MET TYR ASN PHE PRO THR
SEQRES 12 B 192 LYS ALA GLY GLN CYS GLY GLY VAL VAL THR SER VAL GLY
SEQRES 13 B 192 LYS VAL ILE GLY ILE HIS ILE GLY GLY ASN GLY ARG GLN
SEQRES 14 B 192 GLY PHE CYS ALA GLY LEU LYS ARG SER TYR PHE ALA SER
SEQRES 15 B 192 GLU GLN LEU GLU HIS HIS HIS HIS HIS HIS
HET AG7 A 201 43
HET AG7 B 201 43
HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-
HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-
HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
HETSYN AG7 RUPINTRIVIR, BOUND FORM
FORMUL 3 AG7 2(C31 H41 F N4 O7)
FORMUL 5 HOH *194(H2 O)
HELIX 1 1 GLY A 1 ASN A 14 1 14
HELIX 2 2 HIS A 40 GLN A 42 5 3
HELIX 3 3 ILE A 86 ILE A 90 5 5
HELIX 4 4 LYS A 175 ALA A 180 5 6
HELIX 5 5 GLY B 1 ASN B 14 1 14
HELIX 6 6 HIS B 40 GLN B 42 5 3
HELIX 7 7 ILE B 86 ILE B 90 5 5
HELIX 8 8 LYS B 175 ALA B 180 5 6
SHEET 1 A 7 VAL A 15 THR A 20 0
SHEET 2 A 7 GLY A 23 ARG A 31 -1 O MET A 27 N ARG A 16
SHEET 3 A 7 LEU A 34 PRO A 38 -1 O LEU A 34 N ARG A 31
SHEET 4 A 7 ASN A 69 LEU A 77 -1 O ILE A 75 N ALA A 35
SHEET 5 A 7 LYS A 52 VAL A 63 -1 N LEU A 57 O THR A 76
SHEET 6 A 7 THR A 46 ILE A 49 -1 N ILE A 47 O VAL A 54
SHEET 7 A 7 VAL A 15 THR A 20 -1 N GLN A 19 O TRP A 48
SHEET 1 B 7 ALA A 97 ILE A 104 0
SHEET 2 B 7 MET A 112 LEU A 127 -1 O VAL A 119 N ALA A 97
SHEET 3 B 7 LYS A 130 TYR A 138 -1 O LYS A 130 N LEU A 127
SHEET 4 B 7 GLY A 169 GLY A 173 -1 O GLY A 169 N TYR A 138
SHEET 5 B 7 LYS A 156 GLY A 164 -1 N GLY A 163 O PHE A 170
SHEET 6 B 7 VAL A 150 SER A 153 -1 N VAL A 151 O GLY A 159
SHEET 7 B 7 ALA A 97 ILE A 104 -1 N VAL A 103 O VAL A 150
SHEET 1 C 7 VAL B 15 THR B 20 0
SHEET 2 C 7 GLY B 23 ARG B 31 -1 O GLY B 23 N THR B 20
SHEET 3 C 7 LEU B 34 PRO B 38 -1 O LEU B 34 N ARG B 31
SHEET 4 C 7 ASN B 69 LEU B 77 -1 O THR B 73 N LEU B 37
SHEET 5 C 7 LYS B 52 VAL B 63 -1 N LEU B 57 O THR B 76
SHEET 6 C 7 THR B 46 ILE B 49 -1 N ILE B 47 O VAL B 54
SHEET 7 C 7 VAL B 15 THR B 20 -1 N GLN B 19 O TRP B 48
SHEET 1 D 7 ALA B 97 ILE B 104 0
SHEET 2 D 7 MET B 112 LEU B 127 -1 O VAL B 114 N LEU B 102
SHEET 3 D 7 LYS B 130 TYR B 138 -1 O THR B 135 N GLY B 123
SHEET 4 D 7 GLY B 169 GLY B 173 -1 O GLY B 169 N TYR B 138
SHEET 5 D 7 LYS B 156 GLY B 164 -1 N ILE B 162 O PHE B 170
SHEET 6 D 7 VAL B 150 SER B 153 -1 N VAL B 151 O GLY B 159
SHEET 7 D 7 ALA B 97 ILE B 104 -1 N VAL B 103 O VAL B 150
LINK SG CYS A 147 C19 AG7 A 201 1555 1555 1.77
LINK SG CYS B 147 C19 AG7 B 201 1555 1555 1.76
SITE 1 AC1 19 ARG A 39 HIS A 40 GLU A 71 LEU A 125
SITE 2 AC1 19 ASN A 126 LEU A 127 SER A 128 LYS A 130
SITE 3 AC1 19 THR A 142 LYS A 143 ALA A 144 GLY A 145
SITE 4 AC1 19 CYS A 147 HIS A 161 ILE A 162 GLY A 163
SITE 5 AC1 19 GLY A 164 ASN A 165 PHE A 170
SITE 1 AC2 21 GLU A 81 GLN B 22 ARG B 39 HIS B 40
SITE 2 AC2 21 GLU B 71 LEU B 125 ASN B 126 LEU B 127
SITE 3 AC2 21 SER B 128 LYS B 130 THR B 142 LYS B 143
SITE 4 AC2 21 ALA B 144 GLY B 145 CYS B 147 HIS B 161
SITE 5 AC2 21 ILE B 162 GLY B 163 GLY B 164 ASN B 165
SITE 6 AC2 21 PHE B 170
CRYST1 63.885 64.254 75.811 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015653 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015563 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013191 0.00000