HEADER LIPID TRANSPORT 10-AUG-12 4GJQ TITLE CRYSTAL STRUCTURE OF HUMAN GLTP BOUND WITH 12:0 MONOSULFATIDE TITLE 2 (ORTHORHOMBIC FORM;TWO SUBUNITS IN ASYMMETRIC UNIT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOLIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLTP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLTP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLTP-FOLD, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.CABO-BILBAO,F.GONI-DE-CERIO,V.R.SAMYGINA,B.OCHOA-LIZARRALDE, AUTHOR 2 A.N.POPOV,L.MALININA REVDAT 2 08-NOV-23 4GJQ 1 REMARK REVDAT 1 12-JUN-13 4GJQ 0 JRNL AUTH V.R.SAMYGINA,B.OCHOA-LIZARRALDE,A.N.POPOV,A.CABO-BILBAO, JRNL AUTH 2 F.GONI-DE-CERIO,J.G.MOLOTKOVSKY,D.J.PATEL,R.E.BROWN, JRNL AUTH 3 L.MALININA JRNL TITL STRUCTURAL INSIGHTS INTO LIPID-DEPENDENT REVERSIBLE JRNL TITL 2 DIMERIZATION OF HUMAN GLTP. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 603 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519669 JRNL DOI 10.1107/S0907444913000024 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3005 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.363 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3408 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2379 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4604 ; 1.734 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5850 ; 1.224 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 6.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;35.266 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;17.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3603 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 649 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.221 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.310 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2014 ; 0.764 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 797 ; 0.203 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3268 ; 1.409 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 2.348 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1336 ; 3.748 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 209 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 RESIDUE RANGE : A 401 A 533 REMARK 3 RESIDUE RANGE : B 801 B 801 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5140 8.6480 28.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.2135 REMARK 3 T33: 0.2459 T12: -0.0573 REMARK 3 T13: 0.0974 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5081 L22: 3.2938 REMARK 3 L33: 0.7663 L12: 1.0823 REMARK 3 L13: -0.6082 L23: -1.1664 REMARK 3 S TENSOR REMARK 3 S11: -0.2228 S12: 0.0979 S13: 0.0113 REMARK 3 S21: -0.6064 S22: 0.2887 S23: -0.3464 REMARK 3 S31: 0.2323 S32: -0.1642 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 209 REMARK 3 RESIDUE RANGE : B 700 B 700 REMARK 3 RESIDUE RANGE : A 534 A 535 REMARK 3 RESIDUE RANGE : B 802 B 932 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6720 -7.6230 53.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.4189 T22: 0.3590 REMARK 3 T33: 0.1396 T12: -0.1085 REMARK 3 T13: 0.0232 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.2792 L22: 6.1730 REMARK 3 L33: 0.2803 L12: 2.7744 REMARK 3 L13: -0.5936 L23: -1.3129 REMARK 3 S TENSOR REMARK 3 S11: 0.5890 S12: -0.1662 S13: -0.0220 REMARK 3 S21: 1.2851 S22: -0.5869 S23: -0.0249 REMARK 3 S31: -0.2717 S32: 0.1117 S33: -0.0021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9754 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3RZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 3350, 0.1M MES PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.47950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.19500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.73700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.19500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.47950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.73700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 HIS A 7 REMARK 465 LYS A 167 REMARK 465 GLY A 168 REMARK 465 GLN A 169 REMARK 465 ASN A 170 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 HIS B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 66 O HOH B 838 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 80 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ILE B 124 CB - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 79.07 -172.01 REMARK 500 LYS A 87 54.95 -91.06 REMARK 500 LYS B 16 26.79 49.98 REMARK 500 ASN B 63 77.43 -172.38 REMARK 500 ASP B 113 0.17 -59.78 REMARK 500 GLU B 115 -123.98 55.06 REMARK 500 ARG B 116 160.98 88.58 REMARK 500 GLU B 118 9.77 58.75 REMARK 500 LYS B 167 121.05 -12.20 REMARK 500 ASN B 170 91.83 69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 118 ASN B 119 139.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CIS A 301 REMARK 610 CIS B 700 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEX A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIS B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RIC RELATED DB: PDB REMARK 900 RELATED ID: 4GH0 RELATED DB: PDB REMARK 900 RELATED ID: 4GHS RELATED DB: PDB REMARK 900 RELATED ID: 4GIX RELATED DB: PDB DBREF 4GJQ A 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 DBREF 4GJQ B 1 209 UNP Q9NZD2 GLTP_HUMAN 1 209 SEQRES 1 A 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 A 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 A 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 A 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 A 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 A 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 A 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 A 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 A 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 A 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 A 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 A 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 A 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 A 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 A 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 A 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 A 209 VAL SEQRES 1 B 209 MET ALA LEU LEU ALA GLU HIS LEU LEU LYS PRO LEU PRO SEQRES 2 B 209 ALA ASP LYS GLN ILE GLU THR GLY PRO PHE LEU GLU ALA SEQRES 3 B 209 VAL SER HIS LEU PRO PRO PHE PHE ASP CYS LEU GLY SER SEQRES 4 B 209 PRO VAL PHE THR PRO ILE LYS ALA ASP ILE SER GLY ASN SEQRES 5 B 209 ILE THR LYS ILE LYS ALA VAL TYR ASP THR ASN PRO ALA SEQRES 6 B 209 LYS PHE ARG THR LEU GLN ASN ILE LEU GLU VAL GLU LYS SEQRES 7 B 209 GLU MET TYR GLY ALA GLU TRP PRO LYS VAL GLY ALA THR SEQRES 8 B 209 LEU ALA LEU MET TRP LEU LYS ARG GLY LEU ARG PHE ILE SEQRES 9 B 209 GLN VAL PHE LEU GLN SER ILE CYS ASP GLY GLU ARG ASP SEQRES 10 B 209 GLU ASN HIS PRO ASN LEU ILE ARG VAL ASN ALA THR LYS SEQRES 11 B 209 ALA TYR GLU MET ALA LEU LYS LYS TYR HIS GLY TRP ILE SEQRES 12 B 209 VAL GLN LYS ILE PHE GLN ALA ALA LEU TYR ALA ALA PRO SEQRES 13 B 209 TYR LYS SER ASP PHE LEU LYS ALA LEU SER LYS GLY GLN SEQRES 14 B 209 ASN VAL THR GLU GLU GLU CYS LEU GLU LYS ILE ARG LEU SEQRES 15 B 209 PHE LEU VAL ASN TYR THR ALA THR ILE ASP VAL ILE TYR SEQRES 16 B 209 GLU MET TYR THR GLN MET ASN ALA GLU LEU ASN TYR LYS SEQRES 17 B 209 VAL HET CIS A 301 49 HET HEX A 302 6 HET CIS B 700 49 HETNAM CIS (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D- HETNAM 2 CIS GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS- HETNAM 3 CIS 15-ENAMIDE HETNAM HEX HEXANE HETSYN CIS (2S,3R,4E)-N-NERVONIC-1-[BETA-D-(3-SULFATE)- HETSYN 2 CIS GALACTOPYRANOSYL]-2-AMINO-OCTADECENE-3-OL; CIS- HETSYN 3 CIS TETRACOSENOYL SULFATIDE FORMUL 3 CIS 2(C48 H91 N O11 S) FORMUL 4 HEX C6 H14 FORMUL 6 HOH *267(H2 O) HELIX 1 1 GLU A 19 SER A 28 1 10 HELIX 2 2 HIS A 29 GLY A 38 5 10 HELIX 3 3 SER A 39 VAL A 41 5 3 HELIX 4 4 PHE A 42 ASN A 63 1 22 HELIX 5 5 THR A 69 GLY A 82 1 14 HELIX 6 6 ALA A 83 TRP A 85 5 3 HELIX 7 7 VAL A 88 ASP A 113 1 26 HELIX 8 8 ILE A 124 LEU A 136 1 13 HELIX 9 9 LYS A 137 HIS A 140 5 4 HELIX 10 10 GLY A 141 TYR A 153 1 13 HELIX 11 11 TYR A 157 SER A 166 1 10 HELIX 12 12 THR A 172 MET A 201 1 30 HELIX 13 13 GLU B 19 SER B 28 1 10 HELIX 14 14 HIS B 29 GLY B 38 5 10 HELIX 15 15 SER B 39 VAL B 41 5 3 HELIX 16 16 PHE B 42 THR B 62 1 21 HELIX 17 17 THR B 69 GLY B 82 1 14 HELIX 18 18 ALA B 83 TRP B 85 5 3 HELIX 19 19 VAL B 88 ASP B 113 1 26 HELIX 20 20 ILE B 124 LEU B 136 1 13 HELIX 21 21 LYS B 137 HIS B 140 5 4 HELIX 22 22 GLY B 141 TYR B 153 1 13 HELIX 23 23 TYR B 157 LYS B 167 1 11 HELIX 24 24 THR B 172 MET B 201 1 30 CISPEP 1 TRP A 85 PRO A 86 0 6.23 CISPEP 2 TRP B 85 PRO B 86 0 8.96 SITE 1 AC1 21 ILE A 45 ASP A 48 ASN A 52 LYS A 55 SITE 2 AC1 21 ALA A 93 TRP A 96 PHE A 103 LEU A 136 SITE 3 AC1 21 HIS A 140 TYR A 207 VAL A 209 HOH A 403 SITE 4 AC1 21 HOH A 404 HOH A 412 HOH A 420 HOH A 533 SITE 5 AC1 21 VAL B 41 ILE B 45 HIS B 140 VAL B 144 SITE 6 AC1 21 PHE B 148 SITE 1 AC2 3 LEU A 205 ASN A 206 TYR A 207 SITE 1 AC3 21 VAL A 41 PRO A 44 HIS A 140 ILE B 45 SITE 2 AC3 21 ASP B 48 ASN B 52 LYS B 55 ALA B 93 SITE 3 AC3 21 TRP B 96 PHE B 103 LEU B 136 HIS B 140 SITE 4 AC3 21 ILE B 147 TYR B 207 VAL B 209 HOH B 805 SITE 5 AC3 21 HOH B 807 HOH B 813 HOH B 818 HOH B 825 SITE 6 AC3 21 HOH B 840 CRYST1 50.959 95.474 132.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007553 0.00000