data_4GKY # _entry.id 4GKY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GKY pdb_00004gky 10.2210/pdb4gky/pdb RCSB RCSB074313 ? ? WWPDB D_1000074313 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-05 2 'Structure model' 1 1 2013-07-31 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2023-09-13 5 'Structure model' 1 4 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen 10 4 'Structure model' chem_comp 11 4 'Structure model' chem_comp_atom 12 4 'Structure model' chem_comp_bond 13 4 'Structure model' database_2 14 4 'Structure model' pdbx_initial_refinement_model 15 5 'Structure model' pdbx_entry_details 16 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_entity_nonpoly.name' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 3 'Structure model' '_struct_ref_seq_dif.details' 31 4 'Structure model' '_chem_comp.pdbx_synonyms' 32 4 'Structure model' '_database_2.pdbx_DOI' 33 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GKY _pdbx_database_status.recvd_initial_deposition_date 2012-08-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3A4U 'Identical protein in the calcium-bound state, without alpha-1,2-dimannose and in complex with MCDF2' unspecified PDB 3LCP 'Identical protein in the calcium-bound state, without alpha-1,2-dimannose and in complex with MCDF2' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Page, R.C.' 1 'Zheng, C.' 2 'Nix, J.C.' 3 'Misra, S.' 4 'Zhang, B.' 5 # _citation.id primary _citation.title ;Structural Characterization of Carbohydrate Binding by LMAN1 Protein Provides New Insight into the Endoplasmic Reticulum Export of Factors V (FV) and VIII (FVIII). ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 20499 _citation.page_last 20509 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23709226 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.461434 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, C.' 1 ? primary 'Page, R.C.' 2 ? primary 'Das, V.' 3 ? primary 'Nix, J.C.' 4 ? primary 'Wigren, E.' 5 ? primary 'Misra, S.' 6 ? primary 'Zhang, B.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein ERGIC-53' 28672.803 1 ? ? 'Carbohydrate Recognition Domain UNP Residues 31-270' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer man alpha-D-mannopyranose 180.156 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 88 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ER-Golgi intermediate compartment 53 kDa protein, Gp58, Intracellular mannose-specific lectin MR60, Lectin mannose-binding 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMDGVGGDPAVALPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQ RGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIG NNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAA TGGLADDHDVLSFLTFQLTEP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMDGVGGDPAVALPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQ RGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIG NNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAA TGGLADDHDVLSFLTFQLTEP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 alpha-D-mannopyranose MAN 4 GLYCEROL GOL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ASP n 1 23 GLY n 1 24 VAL n 1 25 GLY n 1 26 GLY n 1 27 ASP n 1 28 PRO n 1 29 ALA n 1 30 VAL n 1 31 ALA n 1 32 LEU n 1 33 PRO n 1 34 HIS n 1 35 ARG n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 TYR n 1 40 LYS n 1 41 TYR n 1 42 SER n 1 43 PHE n 1 44 LYS n 1 45 GLY n 1 46 PRO n 1 47 HIS n 1 48 LEU n 1 49 VAL n 1 50 GLN n 1 51 SER n 1 52 ASP n 1 53 GLY n 1 54 THR n 1 55 VAL n 1 56 PRO n 1 57 PHE n 1 58 TRP n 1 59 ALA n 1 60 HIS n 1 61 ALA n 1 62 GLY n 1 63 ASN n 1 64 ALA n 1 65 ILE n 1 66 PRO n 1 67 SER n 1 68 SER n 1 69 ASP n 1 70 GLN n 1 71 ILE n 1 72 ARG n 1 73 VAL n 1 74 ALA n 1 75 PRO n 1 76 SER n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 GLN n 1 81 ARG n 1 82 GLY n 1 83 SER n 1 84 VAL n 1 85 TRP n 1 86 THR n 1 87 LYS n 1 88 THR n 1 89 LYS n 1 90 ALA n 1 91 ALA n 1 92 PHE n 1 93 GLU n 1 94 ASN n 1 95 TRP n 1 96 GLU n 1 97 VAL n 1 98 GLU n 1 99 VAL n 1 100 THR n 1 101 PHE n 1 102 ARG n 1 103 VAL n 1 104 THR n 1 105 GLY n 1 106 ARG n 1 107 GLY n 1 108 ARG n 1 109 ILE n 1 110 GLY n 1 111 ALA n 1 112 ASP n 1 113 GLY n 1 114 LEU n 1 115 ALA n 1 116 ILE n 1 117 TRP n 1 118 TYR n 1 119 ALA n 1 120 GLU n 1 121 ASN n 1 122 GLN n 1 123 GLY n 1 124 LEU n 1 125 GLU n 1 126 GLY n 1 127 PRO n 1 128 VAL n 1 129 PHE n 1 130 GLY n 1 131 SER n 1 132 ALA n 1 133 ASP n 1 134 LEU n 1 135 TRP n 1 136 ASN n 1 137 GLY n 1 138 VAL n 1 139 GLY n 1 140 ILE n 1 141 PHE n 1 142 PHE n 1 143 ASP n 1 144 SER n 1 145 PHE n 1 146 ASP n 1 147 ASN n 1 148 ASP n 1 149 GLY n 1 150 LYS n 1 151 LYS n 1 152 ASN n 1 153 ASN n 1 154 PRO n 1 155 ALA n 1 156 ILE n 1 157 VAL n 1 158 ILE n 1 159 ILE n 1 160 GLY n 1 161 ASN n 1 162 ASN n 1 163 GLY n 1 164 GLN n 1 165 ILE n 1 166 HIS n 1 167 TYR n 1 168 ASP n 1 169 HIS n 1 170 GLN n 1 171 ASN n 1 172 ASP n 1 173 GLY n 1 174 ALA n 1 175 SER n 1 176 GLN n 1 177 ALA n 1 178 LEU n 1 179 ALA n 1 180 SER n 1 181 CYS n 1 182 GLN n 1 183 ARG n 1 184 ASP n 1 185 PHE n 1 186 ARG n 1 187 ASN n 1 188 LYS n 1 189 PRO n 1 190 TYR n 1 191 PRO n 1 192 VAL n 1 193 ARG n 1 194 ALA n 1 195 LYS n 1 196 ILE n 1 197 THR n 1 198 TYR n 1 199 TYR n 1 200 GLN n 1 201 ASN n 1 202 THR n 1 203 LEU n 1 204 THR n 1 205 VAL n 1 206 MET n 1 207 ILE n 1 208 ASN n 1 209 ASN n 1 210 GLY n 1 211 PHE n 1 212 THR n 1 213 PRO n 1 214 ASP n 1 215 LYS n 1 216 ASN n 1 217 ASP n 1 218 TYR n 1 219 GLU n 1 220 PHE n 1 221 CYS n 1 222 ALA n 1 223 LYS n 1 224 VAL n 1 225 GLU n 1 226 ASN n 1 227 MET n 1 228 ILE n 1 229 ILE n 1 230 PRO n 1 231 ALA n 1 232 GLN n 1 233 GLY n 1 234 HIS n 1 235 PHE n 1 236 GLY n 1 237 ILE n 1 238 SER n 1 239 ALA n 1 240 ALA n 1 241 THR n 1 242 GLY n 1 243 GLY n 1 244 LEU n 1 245 ALA n 1 246 ASP n 1 247 ASP n 1 248 HIS n 1 249 ASP n 1 250 VAL n 1 251 LEU n 1 252 SER n 1 253 PHE n 1 254 LEU n 1 255 THR n 1 256 PHE n 1 257 GLN n 1 258 LEU n 1 259 THR n 1 260 GLU n 1 261 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ERGIC53, F5F8D, LMAN1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 10 ? ? ? A . n A 1 2 GLY 2 11 ? ? ? A . n A 1 3 SER 3 12 ? ? ? A . n A 1 4 SER 4 13 ? ? ? A . n A 1 5 HIS 5 14 ? ? ? A . n A 1 6 HIS 6 15 ? ? ? A . n A 1 7 HIS 7 16 ? ? ? A . n A 1 8 HIS 8 17 ? ? ? A . n A 1 9 HIS 9 18 ? ? ? A . n A 1 10 HIS 10 19 ? ? ? A . n A 1 11 SER 11 20 ? ? ? A . n A 1 12 SER 12 21 ? ? ? A . n A 1 13 GLY 13 22 ? ? ? A . n A 1 14 LEU 14 23 ? ? ? A . n A 1 15 VAL 15 24 ? ? ? A . n A 1 16 PRO 16 25 ? ? ? A . n A 1 17 ARG 17 26 ? ? ? A . n A 1 18 GLY 18 27 ? ? ? A . n A 1 19 SER 19 28 ? ? ? A . n A 1 20 HIS 20 29 ? ? ? A . n A 1 21 MET 21 30 ? ? ? A . n A 1 22 ASP 22 31 ? ? ? A . n A 1 23 GLY 23 32 ? ? ? A . n A 1 24 VAL 24 33 ? ? ? A . n A 1 25 GLY 25 34 ? ? ? A . n A 1 26 GLY 26 35 ? ? ? A . n A 1 27 ASP 27 36 ? ? ? A . n A 1 28 PRO 28 37 ? ? ? A . n A 1 29 ALA 29 38 ? ? ? A . n A 1 30 VAL 30 39 ? ? ? A . n A 1 31 ALA 31 40 ? ? ? A . n A 1 32 LEU 32 41 41 LEU LEU A . n A 1 33 PRO 33 42 42 PRO PRO A . n A 1 34 HIS 34 43 43 HIS HIS A . n A 1 35 ARG 35 44 44 ARG ARG A . n A 1 36 ARG 36 45 45 ARG ARG A . n A 1 37 PHE 37 46 46 PHE PHE A . n A 1 38 GLU 38 47 47 GLU GLU A . n A 1 39 TYR 39 48 48 TYR TYR A . n A 1 40 LYS 40 49 49 LYS LYS A . n A 1 41 TYR 41 50 50 TYR TYR A . n A 1 42 SER 42 51 51 SER SER A . n A 1 43 PHE 43 52 52 PHE PHE A . n A 1 44 LYS 44 53 53 LYS LYS A . n A 1 45 GLY 45 54 54 GLY GLY A . n A 1 46 PRO 46 55 55 PRO PRO A . n A 1 47 HIS 47 56 56 HIS HIS A . n A 1 48 LEU 48 57 57 LEU LEU A . n A 1 49 VAL 49 58 58 VAL VAL A . n A 1 50 GLN 50 59 59 GLN GLN A . n A 1 51 SER 51 60 60 SER SER A . n A 1 52 ASP 52 61 61 ASP ASP A . n A 1 53 GLY 53 62 62 GLY GLY A . n A 1 54 THR 54 63 63 THR THR A . n A 1 55 VAL 55 64 64 VAL VAL A . n A 1 56 PRO 56 65 65 PRO PRO A . n A 1 57 PHE 57 66 66 PHE PHE A . n A 1 58 TRP 58 67 67 TRP TRP A . n A 1 59 ALA 59 68 68 ALA ALA A . n A 1 60 HIS 60 69 69 HIS HIS A . n A 1 61 ALA 61 70 70 ALA ALA A . n A 1 62 GLY 62 71 71 GLY GLY A . n A 1 63 ASN 63 72 72 ASN ASN A . n A 1 64 ALA 64 73 73 ALA ALA A . n A 1 65 ILE 65 74 74 ILE ILE A . n A 1 66 PRO 66 75 75 PRO PRO A . n A 1 67 SER 67 76 76 SER SER A . n A 1 68 SER 68 77 77 SER SER A . n A 1 69 ASP 69 78 78 ASP ASP A . n A 1 70 GLN 70 79 79 GLN GLN A . n A 1 71 ILE 71 80 80 ILE ILE A . n A 1 72 ARG 72 81 81 ARG ARG A . n A 1 73 VAL 73 82 82 VAL VAL A . n A 1 74 ALA 74 83 83 ALA ALA A . n A 1 75 PRO 75 84 84 PRO PRO A . n A 1 76 SER 76 85 85 SER SER A . n A 1 77 LEU 77 86 86 LEU LEU A . n A 1 78 LYS 78 87 87 LYS LYS A . n A 1 79 SER 79 88 88 SER SER A . n A 1 80 GLN 80 89 89 GLN GLN A . n A 1 81 ARG 81 90 90 ARG ARG A . n A 1 82 GLY 82 91 91 GLY GLY A . n A 1 83 SER 83 92 92 SER SER A . n A 1 84 VAL 84 93 93 VAL VAL A . n A 1 85 TRP 85 94 94 TRP TRP A . n A 1 86 THR 86 95 95 THR THR A . n A 1 87 LYS 87 96 96 LYS LYS A . n A 1 88 THR 88 97 97 THR THR A . n A 1 89 LYS 89 98 98 LYS LYS A . n A 1 90 ALA 90 99 99 ALA ALA A . n A 1 91 ALA 91 100 100 ALA ALA A . n A 1 92 PHE 92 101 101 PHE PHE A . n A 1 93 GLU 93 102 102 GLU GLU A . n A 1 94 ASN 94 103 103 ASN ASN A . n A 1 95 TRP 95 104 104 TRP TRP A . n A 1 96 GLU 96 105 105 GLU GLU A . n A 1 97 VAL 97 106 106 VAL VAL A . n A 1 98 GLU 98 107 107 GLU GLU A . n A 1 99 VAL 99 108 108 VAL VAL A . n A 1 100 THR 100 109 109 THR THR A . n A 1 101 PHE 101 110 110 PHE PHE A . n A 1 102 ARG 102 111 111 ARG ARG A . n A 1 103 VAL 103 112 112 VAL VAL A . n A 1 104 THR 104 113 113 THR THR A . n A 1 105 GLY 105 114 114 GLY GLY A . n A 1 106 ARG 106 115 115 ARG ARG A . n A 1 107 GLY 107 116 116 GLY GLY A . n A 1 108 ARG 108 117 117 ARG ARG A . n A 1 109 ILE 109 118 118 ILE ILE A . n A 1 110 GLY 110 119 119 GLY GLY A . n A 1 111 ALA 111 120 120 ALA ALA A . n A 1 112 ASP 112 121 121 ASP ASP A . n A 1 113 GLY 113 122 122 GLY GLY A . n A 1 114 LEU 114 123 123 LEU LEU A . n A 1 115 ALA 115 124 124 ALA ALA A . n A 1 116 ILE 116 125 125 ILE ILE A . n A 1 117 TRP 117 126 126 TRP TRP A . n A 1 118 TYR 118 127 127 TYR TYR A . n A 1 119 ALA 119 128 128 ALA ALA A . n A 1 120 GLU 120 129 129 GLU GLU A . n A 1 121 ASN 121 130 130 ASN ASN A . n A 1 122 GLN 122 131 131 GLN GLN A . n A 1 123 GLY 123 132 132 GLY GLY A . n A 1 124 LEU 124 133 133 LEU LEU A . n A 1 125 GLU 125 134 134 GLU GLU A . n A 1 126 GLY 126 135 135 GLY GLY A . n A 1 127 PRO 127 136 136 PRO PRO A . n A 1 128 VAL 128 137 137 VAL VAL A . n A 1 129 PHE 129 138 138 PHE PHE A . n A 1 130 GLY 130 139 139 GLY GLY A . n A 1 131 SER 131 140 140 SER SER A . n A 1 132 ALA 132 141 141 ALA ALA A . n A 1 133 ASP 133 142 142 ASP ASP A . n A 1 134 LEU 134 143 143 LEU LEU A . n A 1 135 TRP 135 144 144 TRP TRP A . n A 1 136 ASN 136 145 145 ASN ASN A . n A 1 137 GLY 137 146 146 GLY GLY A . n A 1 138 VAL 138 147 147 VAL VAL A . n A 1 139 GLY 139 148 148 GLY GLY A . n A 1 140 ILE 140 149 149 ILE ILE A . n A 1 141 PHE 141 150 150 PHE PHE A . n A 1 142 PHE 142 151 151 PHE PHE A . n A 1 143 ASP 143 152 152 ASP ASP A . n A 1 144 SER 144 153 153 SER SER A . n A 1 145 PHE 145 154 154 PHE PHE A . n A 1 146 ASP 146 155 155 ASP ASP A . n A 1 147 ASN 147 156 156 ASN ASN A . n A 1 148 ASP 148 157 157 ASP ASP A . n A 1 149 GLY 149 158 158 GLY GLY A . n A 1 150 LYS 150 159 159 LYS LYS A . n A 1 151 LYS 151 160 160 LYS LYS A . n A 1 152 ASN 152 161 161 ASN ASN A . n A 1 153 ASN 153 162 162 ASN ASN A . n A 1 154 PRO 154 163 163 PRO PRO A . n A 1 155 ALA 155 164 164 ALA ALA A . n A 1 156 ILE 156 165 165 ILE ILE A . n A 1 157 VAL 157 166 166 VAL VAL A . n A 1 158 ILE 158 167 167 ILE ILE A . n A 1 159 ILE 159 168 168 ILE ILE A . n A 1 160 GLY 160 169 169 GLY GLY A . n A 1 161 ASN 161 170 170 ASN ASN A . n A 1 162 ASN 162 171 171 ASN ASN A . n A 1 163 GLY 163 172 172 GLY GLY A . n A 1 164 GLN 164 173 173 GLN GLN A . n A 1 165 ILE 165 174 174 ILE ILE A . n A 1 166 HIS 166 175 175 HIS HIS A . n A 1 167 TYR 167 176 176 TYR TYR A . n A 1 168 ASP 168 177 177 ASP ASP A . n A 1 169 HIS 169 178 178 HIS HIS A . n A 1 170 GLN 170 179 179 GLN GLN A . n A 1 171 ASN 171 180 180 ASN ASN A . n A 1 172 ASP 172 181 181 ASP ASP A . n A 1 173 GLY 173 182 182 GLY GLY A . n A 1 174 ALA 174 183 183 ALA ALA A . n A 1 175 SER 175 184 184 SER SER A . n A 1 176 GLN 176 185 185 GLN GLN A . n A 1 177 ALA 177 186 186 ALA ALA A . n A 1 178 LEU 178 187 187 LEU LEU A . n A 1 179 ALA 179 188 188 ALA ALA A . n A 1 180 SER 180 189 189 SER SER A . n A 1 181 CYS 181 190 190 CYS CYS A . n A 1 182 GLN 182 191 191 GLN GLN A . n A 1 183 ARG 183 192 192 ARG ARG A . n A 1 184 ASP 184 193 193 ASP ASP A . n A 1 185 PHE 185 194 194 PHE PHE A . n A 1 186 ARG 186 195 195 ARG ARG A . n A 1 187 ASN 187 196 196 ASN ASN A . n A 1 188 LYS 188 197 197 LYS LYS A . n A 1 189 PRO 189 198 198 PRO PRO A . n A 1 190 TYR 190 199 199 TYR TYR A . n A 1 191 PRO 191 200 200 PRO PRO A . n A 1 192 VAL 192 201 201 VAL VAL A . n A 1 193 ARG 193 202 202 ARG ARG A . n A 1 194 ALA 194 203 203 ALA ALA A . n A 1 195 LYS 195 204 204 LYS LYS A . n A 1 196 ILE 196 205 205 ILE ILE A . n A 1 197 THR 197 206 206 THR THR A . n A 1 198 TYR 198 207 207 TYR TYR A . n A 1 199 TYR 199 208 208 TYR TYR A . n A 1 200 GLN 200 209 209 GLN GLN A . n A 1 201 ASN 201 210 210 ASN ASN A . n A 1 202 THR 202 211 211 THR THR A . n A 1 203 LEU 203 212 212 LEU LEU A . n A 1 204 THR 204 213 213 THR THR A . n A 1 205 VAL 205 214 214 VAL VAL A . n A 1 206 MET 206 215 215 MET MET A . n A 1 207 ILE 207 216 216 ILE ILE A . n A 1 208 ASN 208 217 217 ASN ASN A . n A 1 209 ASN 209 218 218 ASN ASN A . n A 1 210 GLY 210 219 219 GLY GLY A . n A 1 211 PHE 211 220 220 PHE PHE A . n A 1 212 THR 212 221 221 THR THR A . n A 1 213 PRO 213 222 222 PRO PRO A . n A 1 214 ASP 214 223 223 ASP ASP A . n A 1 215 LYS 215 224 224 LYS LYS A . n A 1 216 ASN 216 225 225 ASN ASN A . n A 1 217 ASP 217 226 226 ASP ASP A . n A 1 218 TYR 218 227 227 TYR TYR A . n A 1 219 GLU 219 228 228 GLU GLU A . n A 1 220 PHE 220 229 229 PHE PHE A . n A 1 221 CYS 221 230 230 CYS CYS A . n A 1 222 ALA 222 231 231 ALA ALA A . n A 1 223 LYS 223 232 232 LYS LYS A . n A 1 224 VAL 224 233 233 VAL VAL A . n A 1 225 GLU 225 234 234 GLU GLU A . n A 1 226 ASN 226 235 235 ASN ASN A . n A 1 227 MET 227 236 236 MET MET A . n A 1 228 ILE 228 237 237 ILE ILE A . n A 1 229 ILE 229 238 238 ILE ILE A . n A 1 230 PRO 230 239 239 PRO PRO A . n A 1 231 ALA 231 240 240 ALA ALA A . n A 1 232 GLN 232 241 241 GLN GLN A . n A 1 233 GLY 233 242 242 GLY GLY A . n A 1 234 HIS 234 243 243 HIS HIS A . n A 1 235 PHE 235 244 244 PHE PHE A . n A 1 236 GLY 236 245 245 GLY GLY A . n A 1 237 ILE 237 246 246 ILE ILE A . n A 1 238 SER 238 247 247 SER SER A . n A 1 239 ALA 239 248 248 ALA ALA A . n A 1 240 ALA 240 249 249 ALA ALA A . n A 1 241 THR 241 250 250 THR THR A . n A 1 242 GLY 242 251 251 GLY GLY A . n A 1 243 GLY 243 252 252 GLY GLY A . n A 1 244 LEU 244 253 253 LEU LEU A . n A 1 245 ALA 245 254 254 ALA ALA A . n A 1 246 ASP 246 255 255 ASP ASP A . n A 1 247 ASP 247 256 256 ASP ASP A . n A 1 248 HIS 248 257 257 HIS HIS A . n A 1 249 ASP 249 258 258 ASP ASP A . n A 1 250 VAL 250 259 259 VAL VAL A . n A 1 251 LEU 251 260 260 LEU LEU A . n A 1 252 SER 252 261 261 SER SER A . n A 1 253 PHE 253 262 262 PHE PHE A . n A 1 254 LEU 254 263 263 LEU LEU A . n A 1 255 THR 255 264 264 THR THR A . n A 1 256 PHE 256 265 265 PHE PHE A . n A 1 257 GLN 257 266 266 GLN GLN A . n A 1 258 LEU 258 267 267 LEU LEU A . n A 1 259 THR 259 268 268 THR THR A . n A 1 260 GLU 260 269 269 GLU GLU A . n A 1 261 PRO 261 270 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 301 500 CA CA A . C 2 CA 1 302 501 CA CA A . D 3 MAN 1 303 600 MAN MAN A . E 4 GOL 1 304 1 GOL GOL A . F 4 GOL 1 305 2 GOL GOL A . G 5 HOH 1 401 1 HOH HOH A . G 5 HOH 2 402 3 HOH HOH A . G 5 HOH 3 403 4 HOH HOH A . G 5 HOH 4 404 5 HOH HOH A . G 5 HOH 5 405 7 HOH HOH A . G 5 HOH 6 406 10 HOH HOH A . G 5 HOH 7 407 11 HOH HOH A . G 5 HOH 8 408 12 HOH HOH A . G 5 HOH 9 409 13 HOH HOH A . G 5 HOH 10 410 14 HOH HOH A . G 5 HOH 11 411 15 HOH HOH A . G 5 HOH 12 412 18 HOH HOH A . G 5 HOH 13 413 19 HOH HOH A . G 5 HOH 14 414 20 HOH HOH A . G 5 HOH 15 415 21 HOH HOH A . G 5 HOH 16 416 22 HOH HOH A . G 5 HOH 17 417 23 HOH HOH A . G 5 HOH 18 418 24 HOH HOH A . G 5 HOH 19 419 25 HOH HOH A . G 5 HOH 20 420 26 HOH HOH A . G 5 HOH 21 421 27 HOH HOH A . G 5 HOH 22 422 28 HOH HOH A . G 5 HOH 23 423 30 HOH HOH A . G 5 HOH 24 424 31 HOH HOH A . G 5 HOH 25 425 32 HOH HOH A . G 5 HOH 26 426 36 HOH HOH A . G 5 HOH 27 427 37 HOH HOH A . G 5 HOH 28 428 38 HOH HOH A . G 5 HOH 29 429 39 HOH HOH A . G 5 HOH 30 430 40 HOH HOH A . G 5 HOH 31 431 41 HOH HOH A . G 5 HOH 32 432 42 HOH HOH A . G 5 HOH 33 433 43 HOH HOH A . G 5 HOH 34 434 44 HOH HOH A . G 5 HOH 35 435 45 HOH HOH A . G 5 HOH 36 436 46 HOH HOH A . G 5 HOH 37 437 54 HOH HOH A . G 5 HOH 38 438 55 HOH HOH A . G 5 HOH 39 439 56 HOH HOH A . G 5 HOH 40 440 57 HOH HOH A . G 5 HOH 41 441 60 HOH HOH A . G 5 HOH 42 442 61 HOH HOH A . G 5 HOH 43 443 62 HOH HOH A . G 5 HOH 44 444 63 HOH HOH A . G 5 HOH 45 445 64 HOH HOH A . G 5 HOH 46 446 65 HOH HOH A . G 5 HOH 47 447 69 HOH HOH A . G 5 HOH 48 448 70 HOH HOH A . G 5 HOH 49 449 71 HOH HOH A . G 5 HOH 50 450 72 HOH HOH A . G 5 HOH 51 451 73 HOH HOH A . G 5 HOH 52 452 74 HOH HOH A . G 5 HOH 53 453 75 HOH HOH A . G 5 HOH 54 454 77 HOH HOH A . G 5 HOH 55 455 78 HOH HOH A . G 5 HOH 56 456 79 HOH HOH A . G 5 HOH 57 457 80 HOH HOH A . G 5 HOH 58 458 81 HOH HOH A . G 5 HOH 59 459 90 HOH HOH A . G 5 HOH 60 460 93 HOH HOH A . G 5 HOH 61 461 94 HOH HOH A . G 5 HOH 62 462 96 HOH HOH A . G 5 HOH 63 463 97 HOH HOH A . G 5 HOH 64 464 98 HOH HOH A . G 5 HOH 65 465 99 HOH HOH A . G 5 HOH 66 466 100 HOH HOH A . G 5 HOH 67 467 101 HOH HOH A . G 5 HOH 68 468 102 HOH HOH A . G 5 HOH 69 469 104 HOH HOH A . G 5 HOH 70 470 105 HOH HOH A . G 5 HOH 71 471 107 HOH HOH A . G 5 HOH 72 472 108 HOH HOH A . G 5 HOH 73 473 109 HOH HOH A . G 5 HOH 74 474 110 HOH HOH A . G 5 HOH 75 475 111 HOH HOH A . G 5 HOH 76 476 112 HOH HOH A . G 5 HOH 77 477 113 HOH HOH A . G 5 HOH 78 478 114 HOH HOH A . G 5 HOH 79 479 115 HOH HOH A . G 5 HOH 80 480 116 HOH HOH A . G 5 HOH 81 481 118 HOH HOH A . G 5 HOH 82 482 119 HOH HOH A . G 5 HOH 83 483 120 HOH HOH A . G 5 HOH 84 484 121 HOH HOH A . G 5 HOH 85 485 122 HOH HOH A . G 5 HOH 86 486 124 HOH HOH A . G 5 HOH 87 487 126 HOH HOH A . G 5 HOH 88 488 127 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' '(phenix.refine: 1.8_1069)' ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 PHENIX phasing 1.8_1069 ? 6 # _cell.entry_id 4GKY _cell.length_a 110.263 _cell.length_b 110.263 _cell.length_c 38.332 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GKY _symmetry.space_group_name_H-M 'P 6' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GKY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;17% PEG 8000, 0.002M calcium chloride, 0.01M alpha-1,2-dimannose, 0.05M sodium cacodylate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-11-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Cryogenically-cooled single crystal Si(111) side bounce monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4GKY _reflns.observed_criterion_sigma_I 23.0 _reflns.observed_criterion_sigma_F 23.0 _reflns.d_resolution_low 47.75 _reflns.d_resolution_high 2.42 _reflns.number_obs 10429 _reflns.number_all 10429 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.42 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.437 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.7 _reflns_shell.pdbx_redundancy 10.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4GKY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10427 _refine.ls_number_reflns_all 10429 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.332 _refine.ls_d_res_high 2.4201 _refine.ls_percent_reflns_obs 99.97 _refine.ls_R_factor_obs 0.1943 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1924 _refine.ls_R_factor_R_free 0.2123 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 1043 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3A4U' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.22 _refine.pdbx_overall_phase_error 21.23 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1799 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 1913 _refine_hist.d_res_high 2.4201 _refine_hist.d_res_low 38.332 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1872 'X-RAY DIFFRACTION' ? f_angle_d 0.979 ? ? 2538 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.526 ? ? 658 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 264 'X-RAY DIFFRACTION' ? f_plane_restr 0.010 ? ? 335 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.4201 2.5477 1339 0.2545 100.00 0.2934 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.5477 2.7073 1319 0.2442 100.00 0.3006 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.7073 2.9162 1330 0.2272 100.00 0.2560 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.9162 3.2096 1318 0.2212 100.00 0.2376 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.2096 3.6737 1340 0.1802 100.00 0.2096 . . 151 . . . . 'X-RAY DIFFRACTION' . 3.6737 4.6272 1345 0.1603 100.00 0.1651 . . 151 . . . . 'X-RAY DIFFRACTION' . 4.6272 38.3368 1393 0.1757 100.00 0.1877 . . 156 . . . . # _database_PDB_matrix.entry_id 4GKY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GKY _struct.title 'Crystal structure of a carbohydrate-binding domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GKY _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Protein Transport, Endoplasmic reticulum' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LMAN1_HUMAN _struct_ref.pdbx_db_accession P49257 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DGVGGDPAVALPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTF RVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASC QRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEP ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GKY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 261 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P49257 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 31 _struct_ref_seq.pdbx_auth_seq_align_end 270 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GKY MET A 1 ? UNP P49257 ? ? 'expression tag' 10 1 1 4GKY GLY A 2 ? UNP P49257 ? ? 'expression tag' 11 2 1 4GKY SER A 3 ? UNP P49257 ? ? 'expression tag' 12 3 1 4GKY SER A 4 ? UNP P49257 ? ? 'expression tag' 13 4 1 4GKY HIS A 5 ? UNP P49257 ? ? 'expression tag' 14 5 1 4GKY HIS A 6 ? UNP P49257 ? ? 'expression tag' 15 6 1 4GKY HIS A 7 ? UNP P49257 ? ? 'expression tag' 16 7 1 4GKY HIS A 8 ? UNP P49257 ? ? 'expression tag' 17 8 1 4GKY HIS A 9 ? UNP P49257 ? ? 'expression tag' 18 9 1 4GKY HIS A 10 ? UNP P49257 ? ? 'expression tag' 19 10 1 4GKY SER A 11 ? UNP P49257 ? ? 'expression tag' 20 11 1 4GKY SER A 12 ? UNP P49257 ? ? 'expression tag' 21 12 1 4GKY GLY A 13 ? UNP P49257 ? ? 'expression tag' 22 13 1 4GKY LEU A 14 ? UNP P49257 ? ? 'expression tag' 23 14 1 4GKY VAL A 15 ? UNP P49257 ? ? 'expression tag' 24 15 1 4GKY PRO A 16 ? UNP P49257 ? ? 'expression tag' 25 16 1 4GKY ARG A 17 ? UNP P49257 ? ? 'expression tag' 26 17 1 4GKY GLY A 18 ? UNP P49257 ? ? 'expression tag' 27 18 1 4GKY SER A 19 ? UNP P49257 ? ? 'expression tag' 28 19 1 4GKY HIS A 20 ? UNP P49257 ? ? 'expression tag' 29 20 1 4GKY MET A 21 ? UNP P49257 ? ? 'expression tag' 30 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id TYR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 39 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 42 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id TYR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 48 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 51 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 181 SG ? ? ? 1_555 A CYS 221 SG ? ? A CYS 190 A CYS 230 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc1 metalc ? ? A ASP 143 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 152 A CA 301 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc2 metalc ? ? A ASP 143 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 152 A CA 301 1_555 ? ? ? ? ? ? ? 2.674 ? ? metalc3 metalc ? ? A PHE 145 O ? ? ? 1_555 B CA . CA ? ? A PHE 154 A CA 301 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc4 metalc ? ? A ASP 146 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 155 A CA 302 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc5 metalc ? ? A ASN 147 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 156 A CA 301 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc6 metalc ? ? A ASP 148 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 157 A CA 302 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc7 metalc ? ? A ASP 148 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 157 A CA 302 1_555 ? ? ? ? ? ? ? 2.873 ? ? metalc8 metalc ? ? A ASN 152 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 161 A CA 302 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc9 metalc ? ? A ASN 153 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 162 A CA 302 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc10 metalc ? ? A ASP 172 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 181 A CA 301 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc11 metalc ? ? A ASP 172 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 181 A CA 302 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc12 metalc ? ? B CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 301 A HOH 442 1_555 ? ? ? ? ? ? ? 2.597 ? ? metalc13 metalc ? ? B CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 301 A HOH 443 1_555 ? ? ? ? ? ? ? 2.585 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 302 A HOH 444 1_555 ? ? ? ? ? ? ? 2.661 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 143 ? A ASP 152 ? 1_555 49.0 ? 2 OD2 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A PHE 145 ? A PHE 154 ? 1_555 103.5 ? 3 OD1 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A PHE 145 ? A PHE 154 ? 1_555 72.6 ? 4 OD2 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASN 147 ? A ASN 156 ? 1_555 161.3 ? 5 OD1 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASN 147 ? A ASN 156 ? 1_555 148.7 ? 6 O ? A PHE 145 ? A PHE 154 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASN 147 ? A ASN 156 ? 1_555 91.6 ? 7 OD2 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 172 ? A ASP 181 ? 1_555 81.9 ? 8 OD1 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 172 ? A ASP 181 ? 1_555 115.3 ? 9 O ? A PHE 145 ? A PHE 154 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 172 ? A ASP 181 ? 1_555 84.4 ? 10 OD1 ? A ASN 147 ? A ASN 156 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 172 ? A ASP 181 ? 1_555 88.9 ? 11 OD2 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 442 ? 1_555 98.8 ? 12 OD1 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 442 ? 1_555 59.0 ? 13 O ? A PHE 145 ? A PHE 154 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 442 ? 1_555 84.4 ? 14 OD1 ? A ASN 147 ? A ASN 156 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 442 ? 1_555 93.4 ? 15 OD1 ? A ASP 172 ? A ASP 181 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 442 ? 1_555 168.6 ? 16 OD2 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 443 ? 1_555 83.4 ? 17 OD1 ? A ASP 143 ? A ASP 152 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 443 ? 1_555 117.2 ? 18 O ? A PHE 145 ? A PHE 154 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 443 ? 1_555 170.1 ? 19 OD1 ? A ASN 147 ? A ASN 156 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 443 ? 1_555 80.4 ? 20 OD1 ? A ASP 172 ? A ASP 181 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 443 ? 1_555 89.6 ? 21 O ? G HOH . ? A HOH 442 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? G HOH . ? A HOH 443 ? 1_555 101.8 ? 22 OD1 ? A ASP 146 ? A ASP 155 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASP 148 ? A ASP 157 ? 1_555 65.3 ? 23 OD1 ? A ASP 146 ? A ASP 155 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 148 ? A ASP 157 ? 1_555 93.4 ? 24 OD1 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 148 ? A ASP 157 ? 1_555 47.1 ? 25 OD1 ? A ASP 146 ? A ASP 155 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 152 ? A ASN 161 ? 1_555 86.9 ? 26 OD1 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 152 ? A ASN 161 ? 1_555 91.4 ? 27 OD2 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 152 ? A ASN 161 ? 1_555 131.9 ? 28 OD1 ? A ASP 146 ? A ASP 155 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 153 ? A ASN 162 ? 1_555 89.1 ? 29 OD1 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 153 ? A ASN 162 ? 1_555 148.4 ? 30 OD2 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 153 ? A ASN 162 ? 1_555 160.1 ? 31 OD1 ? A ASN 152 ? A ASN 161 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 153 ? A ASN 162 ? 1_555 67.9 ? 32 OD1 ? A ASP 146 ? A ASP 155 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 172 ? A ASP 181 ? 1_555 87.4 ? 33 OD1 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 172 ? A ASP 181 ? 1_555 104.0 ? 34 OD2 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 172 ? A ASP 181 ? 1_555 68.0 ? 35 OD1 ? A ASN 152 ? A ASN 161 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 172 ? A ASP 181 ? 1_555 159.6 ? 36 OD1 ? A ASN 153 ? A ASN 162 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD2 ? A ASP 172 ? A ASP 181 ? 1_555 92.4 ? 37 OD1 ? A ASP 146 ? A ASP 155 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 150.2 ? 38 OD1 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 144.4 ? 39 OD2 ? A ASP 148 ? A ASP 157 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 108.2 ? 40 OD1 ? A ASN 152 ? A ASN 161 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 93.2 ? 41 OD1 ? A ASN 153 ? A ASN 162 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 63.7 ? 42 OD2 ? A ASP 172 ? A ASP 181 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 82.2 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 181 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 221 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 190 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 230 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 45 A . ? GLY 54 A PRO 46 A ? PRO 55 A 1 15.03 2 ALA 111 A . ? ALA 120 A ASP 112 A ? ASP 121 A 1 -9.55 3 ASN 153 A . ? ASN 162 A PRO 154 A ? PRO 163 A 1 0.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 34 ? PHE A 37 ? HIS A 43 PHE A 46 A 2 ASP A 247 ? THR A 259 ? ASP A 256 THR A 268 A 3 ILE A 71 ? ALA A 74 ? ILE A 80 ALA A 83 A 4 ILE A 65 ? PRO A 66 ? ILE A 74 PRO A 75 B 1 PHE A 43 ? LYS A 44 ? PHE A 52 LYS A 53 B 2 ASP A 247 ? THR A 259 ? ASP A 256 THR A 268 B 3 TRP A 95 ? THR A 104 ? TRP A 104 THR A 113 B 4 VAL A 192 ? TYR A 199 ? VAL A 201 TYR A 208 B 5 THR A 202 ? ASN A 208 ? THR A 211 ASN A 217 B 6 GLU A 219 ? VAL A 224 ? GLU A 228 VAL A 233 C 1 TRP A 58 ? GLY A 62 ? TRP A 67 GLY A 71 C 2 ARG A 81 ? THR A 86 ? ARG A 90 THR A 95 C 3 HIS A 234 ? ALA A 240 ? HIS A 243 ALA A 249 C 4 GLY A 113 ? ALA A 119 ? GLY A 122 ALA A 128 C 5 ASN A 136 ? ASP A 143 ? ASN A 145 ASP A 152 C 6 ALA A 155 ? ASN A 162 ? ALA A 164 ASN A 171 C 7 ALA A 179 ? GLN A 182 ? ALA A 188 GLN A 191 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 36 ? N ARG A 45 O GLN A 257 ? O GLN A 266 A 2 3 O HIS A 248 ? O HIS A 257 N ALA A 74 ? N ALA A 83 A 3 4 O ARG A 72 ? O ARG A 81 N ILE A 65 ? N ILE A 74 B 1 2 N PHE A 43 ? N PHE A 52 O PHE A 253 ? O PHE A 262 B 2 3 O PHE A 256 ? O PHE A 265 N GLU A 96 ? N GLU A 105 B 3 4 N TRP A 95 ? N TRP A 104 O TYR A 198 ? O TYR A 207 B 4 5 N ARG A 193 ? N ARG A 202 O ASN A 208 ? O ASN A 217 B 5 6 N LEU A 203 ? N LEU A 212 O VAL A 224 ? O VAL A 233 C 1 2 N ALA A 59 ? N ALA A 68 O TRP A 85 ? O TRP A 94 C 2 3 N VAL A 84 ? N VAL A 93 O ILE A 237 ? O ILE A 246 C 3 4 O GLY A 236 ? O GLY A 245 N TRP A 117 ? N TRP A 126 C 4 5 N LEU A 114 ? N LEU A 123 O PHE A 142 ? O PHE A 151 C 5 6 N PHE A 141 ? N PHE A 150 O VAL A 157 ? O VAL A 166 C 6 7 N ILE A 156 ? N ILE A 165 O CYS A 181 ? O CYS A 190 # _pdbx_entry_details.entry_id 4GKY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 66 ? ? 80.64 4.28 2 1 ASN A 218 ? ? -78.48 21.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 10 ? A MET 1 2 1 Y 1 A GLY 11 ? A GLY 2 3 1 Y 1 A SER 12 ? A SER 3 4 1 Y 1 A SER 13 ? A SER 4 5 1 Y 1 A HIS 14 ? A HIS 5 6 1 Y 1 A HIS 15 ? A HIS 6 7 1 Y 1 A HIS 16 ? A HIS 7 8 1 Y 1 A HIS 17 ? A HIS 8 9 1 Y 1 A HIS 18 ? A HIS 9 10 1 Y 1 A HIS 19 ? A HIS 10 11 1 Y 1 A SER 20 ? A SER 11 12 1 Y 1 A SER 21 ? A SER 12 13 1 Y 1 A GLY 22 ? A GLY 13 14 1 Y 1 A LEU 23 ? A LEU 14 15 1 Y 1 A VAL 24 ? A VAL 15 16 1 Y 1 A PRO 25 ? A PRO 16 17 1 Y 1 A ARG 26 ? A ARG 17 18 1 Y 1 A GLY 27 ? A GLY 18 19 1 Y 1 A SER 28 ? A SER 19 20 1 Y 1 A HIS 29 ? A HIS 20 21 1 Y 1 A MET 30 ? A MET 21 22 1 Y 1 A ASP 31 ? A ASP 22 23 1 Y 1 A GLY 32 ? A GLY 23 24 1 Y 1 A VAL 33 ? A VAL 24 25 1 Y 1 A GLY 34 ? A GLY 25 26 1 Y 1 A GLY 35 ? A GLY 26 27 1 Y 1 A ASP 36 ? A ASP 27 28 1 Y 1 A PRO 37 ? A PRO 28 29 1 Y 1 A ALA 38 ? A ALA 29 30 1 Y 1 A VAL 39 ? A VAL 30 31 1 Y 1 A ALA 40 ? A ALA 31 32 1 Y 1 A PRO 270 ? A PRO 261 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MAN C1 C N S 245 MAN C2 C N S 246 MAN C3 C N S 247 MAN C4 C N S 248 MAN C5 C N R 249 MAN C6 C N N 250 MAN O1 O N N 251 MAN O2 O N N 252 MAN O3 O N N 253 MAN O4 O N N 254 MAN O5 O N N 255 MAN O6 O N N 256 MAN H1 H N N 257 MAN H2 H N N 258 MAN H3 H N N 259 MAN H4 H N N 260 MAN H5 H N N 261 MAN H61 H N N 262 MAN H62 H N N 263 MAN HO1 H N N 264 MAN HO2 H N N 265 MAN HO3 H N N 266 MAN HO4 H N N 267 MAN HO6 H N N 268 MET N N N N 269 MET CA C N S 270 MET C C N N 271 MET O O N N 272 MET CB C N N 273 MET CG C N N 274 MET SD S N N 275 MET CE C N N 276 MET OXT O N N 277 MET H H N N 278 MET H2 H N N 279 MET HA H N N 280 MET HB2 H N N 281 MET HB3 H N N 282 MET HG2 H N N 283 MET HG3 H N N 284 MET HE1 H N N 285 MET HE2 H N N 286 MET HE3 H N N 287 MET HXT H N N 288 PHE N N N N 289 PHE CA C N S 290 PHE C C N N 291 PHE O O N N 292 PHE CB C N N 293 PHE CG C Y N 294 PHE CD1 C Y N 295 PHE CD2 C Y N 296 PHE CE1 C Y N 297 PHE CE2 C Y N 298 PHE CZ C Y N 299 PHE OXT O N N 300 PHE H H N N 301 PHE H2 H N N 302 PHE HA H N N 303 PHE HB2 H N N 304 PHE HB3 H N N 305 PHE HD1 H N N 306 PHE HD2 H N N 307 PHE HE1 H N N 308 PHE HE2 H N N 309 PHE HZ H N N 310 PHE HXT H N N 311 PRO N N N N 312 PRO CA C N S 313 PRO C C N N 314 PRO O O N N 315 PRO CB C N N 316 PRO CG C N N 317 PRO CD C N N 318 PRO OXT O N N 319 PRO H H N N 320 PRO HA H N N 321 PRO HB2 H N N 322 PRO HB3 H N N 323 PRO HG2 H N N 324 PRO HG3 H N N 325 PRO HD2 H N N 326 PRO HD3 H N N 327 PRO HXT H N N 328 SER N N N N 329 SER CA C N S 330 SER C C N N 331 SER O O N N 332 SER CB C N N 333 SER OG O N N 334 SER OXT O N N 335 SER H H N N 336 SER H2 H N N 337 SER HA H N N 338 SER HB2 H N N 339 SER HB3 H N N 340 SER HG H N N 341 SER HXT H N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MAN C1 C2 sing N N 231 MAN C1 O1 sing N N 232 MAN C1 O5 sing N N 233 MAN C1 H1 sing N N 234 MAN C2 C3 sing N N 235 MAN C2 O2 sing N N 236 MAN C2 H2 sing N N 237 MAN C3 C4 sing N N 238 MAN C3 O3 sing N N 239 MAN C3 H3 sing N N 240 MAN C4 C5 sing N N 241 MAN C4 O4 sing N N 242 MAN C4 H4 sing N N 243 MAN C5 C6 sing N N 244 MAN C5 O5 sing N N 245 MAN C5 H5 sing N N 246 MAN C6 O6 sing N N 247 MAN C6 H61 sing N N 248 MAN C6 H62 sing N N 249 MAN O1 HO1 sing N N 250 MAN O2 HO2 sing N N 251 MAN O3 HO3 sing N N 252 MAN O4 HO4 sing N N 253 MAN O6 HO6 sing N N 254 MET N CA sing N N 255 MET N H sing N N 256 MET N H2 sing N N 257 MET CA C sing N N 258 MET CA CB sing N N 259 MET CA HA sing N N 260 MET C O doub N N 261 MET C OXT sing N N 262 MET CB CG sing N N 263 MET CB HB2 sing N N 264 MET CB HB3 sing N N 265 MET CG SD sing N N 266 MET CG HG2 sing N N 267 MET CG HG3 sing N N 268 MET SD CE sing N N 269 MET CE HE1 sing N N 270 MET CE HE2 sing N N 271 MET CE HE3 sing N N 272 MET OXT HXT sing N N 273 PHE N CA sing N N 274 PHE N H sing N N 275 PHE N H2 sing N N 276 PHE CA C sing N N 277 PHE CA CB sing N N 278 PHE CA HA sing N N 279 PHE C O doub N N 280 PHE C OXT sing N N 281 PHE CB CG sing N N 282 PHE CB HB2 sing N N 283 PHE CB HB3 sing N N 284 PHE CG CD1 doub Y N 285 PHE CG CD2 sing Y N 286 PHE CD1 CE1 sing Y N 287 PHE CD1 HD1 sing N N 288 PHE CD2 CE2 doub Y N 289 PHE CD2 HD2 sing N N 290 PHE CE1 CZ doub Y N 291 PHE CE1 HE1 sing N N 292 PHE CE2 CZ sing Y N 293 PHE CE2 HE2 sing N N 294 PHE CZ HZ sing N N 295 PHE OXT HXT sing N N 296 PRO N CA sing N N 297 PRO N CD sing N N 298 PRO N H sing N N 299 PRO CA C sing N N 300 PRO CA CB sing N N 301 PRO CA HA sing N N 302 PRO C O doub N N 303 PRO C OXT sing N N 304 PRO CB CG sing N N 305 PRO CB HB2 sing N N 306 PRO CB HB3 sing N N 307 PRO CG CD sing N N 308 PRO CG HG2 sing N N 309 PRO CG HG3 sing N N 310 PRO CD HD2 sing N N 311 PRO CD HD3 sing N N 312 PRO OXT HXT sing N N 313 SER N CA sing N N 314 SER N H sing N N 315 SER N H2 sing N N 316 SER CA C sing N N 317 SER CA CB sing N N 318 SER CA HA sing N N 319 SER C O doub N N 320 SER C OXT sing N N 321 SER CB OG sing N N 322 SER CB HB2 sing N N 323 SER CB HB3 sing N N 324 SER OG HG sing N N 325 SER OXT HXT sing N N 326 THR N CA sing N N 327 THR N H sing N N 328 THR N H2 sing N N 329 THR CA C sing N N 330 THR CA CB sing N N 331 THR CA HA sing N N 332 THR C O doub N N 333 THR C OXT sing N N 334 THR CB OG1 sing N N 335 THR CB CG2 sing N N 336 THR CB HB sing N N 337 THR OG1 HG1 sing N N 338 THR CG2 HG21 sing N N 339 THR CG2 HG22 sing N N 340 THR CG2 HG23 sing N N 341 THR OXT HXT sing N N 342 TRP N CA sing N N 343 TRP N H sing N N 344 TRP N H2 sing N N 345 TRP CA C sing N N 346 TRP CA CB sing N N 347 TRP CA HA sing N N 348 TRP C O doub N N 349 TRP C OXT sing N N 350 TRP CB CG sing N N 351 TRP CB HB2 sing N N 352 TRP CB HB3 sing N N 353 TRP CG CD1 doub Y N 354 TRP CG CD2 sing Y N 355 TRP CD1 NE1 sing Y N 356 TRP CD1 HD1 sing N N 357 TRP CD2 CE2 doub Y N 358 TRP CD2 CE3 sing Y N 359 TRP NE1 CE2 sing Y N 360 TRP NE1 HE1 sing N N 361 TRP CE2 CZ2 sing Y N 362 TRP CE3 CZ3 doub Y N 363 TRP CE3 HE3 sing N N 364 TRP CZ2 CH2 doub Y N 365 TRP CZ2 HZ2 sing N N 366 TRP CZ3 CH2 sing Y N 367 TRP CZ3 HZ3 sing N N 368 TRP CH2 HH2 sing N N 369 TRP OXT HXT sing N N 370 TYR N CA sing N N 371 TYR N H sing N N 372 TYR N H2 sing N N 373 TYR CA C sing N N 374 TYR CA CB sing N N 375 TYR CA HA sing N N 376 TYR C O doub N N 377 TYR C OXT sing N N 378 TYR CB CG sing N N 379 TYR CB HB2 sing N N 380 TYR CB HB3 sing N N 381 TYR CG CD1 doub Y N 382 TYR CG CD2 sing Y N 383 TYR CD1 CE1 sing Y N 384 TYR CD1 HD1 sing N N 385 TYR CD2 CE2 doub Y N 386 TYR CD2 HD2 sing N N 387 TYR CE1 CZ doub Y N 388 TYR CE1 HE1 sing N N 389 TYR CE2 CZ sing Y N 390 TYR CE2 HE2 sing N N 391 TYR CZ OH sing N N 392 TYR OH HH sing N N 393 TYR OXT HXT sing N N 394 VAL N CA sing N N 395 VAL N H sing N N 396 VAL N H2 sing N N 397 VAL CA C sing N N 398 VAL CA CB sing N N 399 VAL CA HA sing N N 400 VAL C O doub N N 401 VAL C OXT sing N N 402 VAL CB CG1 sing N N 403 VAL CB CG2 sing N N 404 VAL CB HB sing N N 405 VAL CG1 HG11 sing N N 406 VAL CG1 HG12 sing N N 407 VAL CG1 HG13 sing N N 408 VAL CG2 HG21 sing N N 409 VAL CG2 HG22 sing N N 410 VAL CG2 HG23 sing N N 411 VAL OXT HXT sing N N 412 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3A4U _pdbx_initial_refinement_model.details 'PDB ENTRY 3A4U' # _atom_sites.entry_id 4GKY _atom_sites.fract_transf_matrix[1][1] 0.009069 _atom_sites.fract_transf_matrix[1][2] 0.005236 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010472 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026088 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA H N O S # loop_