data_4GLE # _entry.id 4GLE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GLE pdb_00004gle 10.2210/pdb4gle/pdb NDB NA1982 ? ? RCSB RCSB074329 ? ? WWPDB D_1000074329 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-21 2 'Structure model' 1 1 2012-12-26 3 'Structure model' 1 2 2013-02-06 4 'Structure model' 1 3 2023-09-13 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_ref_seq_dif.details' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GLE _pdbx_database_status.recvd_initial_deposition_date 2012-08-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3TC3 _pdbx_database_related.details 'Crystal structure of SacUVDE' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Meulenbroek, E.M.' 1 'Peron Cane, C.' 2 'Jala, I.' 3 'Iwai, S.' 4 'Moolenaar, G.F.' 5 'Goosen, N.' 6 'Pannu, N.S.' 7 # _citation.id primary _citation.title 'UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 1363 _citation.page_last 1371 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23221644 _citation.pdbx_database_id_DOI 10.1093/nar/gks1127 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Meulenbroek, E.M.' 1 ? primary 'Peron Cane, C.' 2 ? primary 'Jala, I.' 3 ? primary 'Iwai, S.' 4 ? primary 'Moolenaar, G.F.' 5 ? primary 'Goosen, N.' 6 ? primary 'Pannu, N.S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*CP*GP*TP*CP*AP*AP*GP*GP*AP*CP*GP*C)-3'" 4594.986 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*GP*TP*CP*CP*(64T)P*(5PY)P*GP*AP*CP*GP*AP*CP*G)-3'" 4587.989 1 ? ? ? ? 3 polymer man 'UV damage endonuclease' 35698.789 1 3.-.-.- ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 4 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DC)(DG)(DT)(DC)(DA)(DA)(DG)(DG)(DA)(DC)(DG)(DC)' CGTCGTCAAGGACGC B ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(DT)(DC)(DC)(64T)(5PY)(DG)(DA)(DC)(DG)(DA)(DC)(DG)' GCGTCCTTGACGACG C ? 3 'polypeptide(L)' no no ;MGHHHHHHHHHHSSGHIEGRHMRVGYVSTNYSLGCKADKTIKLSSLSEERVLKVSSSNLLCLKNILEWNLKHEILFFRIS SNTIPLASHPKFHVNWKDKLSHILGDIGDFIKENSIRISMHPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQ IHVGSSMNGKEESLNRFIENFRKLPSNISKRLVIENDDKVFSVKDCLWISERTGIPVIFDNLHHSILNNGESLNDALSLV RRTWKDRPMIDYSEQEPGEKPGVHATTINEENFRRFVNEVDEVDIMLEVKDKEISALKAVKVLKELNKLD ; ;MGHHHHHHHHHHSSGHIEGRHMRVGYVSTNYSLGCKADKTIKLSSLSEERVLKVSSSNLLCLKNILEWNLKHEILFFRIS SNTIPLASHPKFHVNWKDKLSHILGDIGDFIKENSIRISMHPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQ IHVGSSMNGKEESLNRFIENFRKLPSNISKRLVIENDDKVFSVKDCLWISERTGIPVIFDNLHHSILNNGESLNDALSLV RRTWKDRPMIDYSEQEPGEKPGVHATTINEENFRRFVNEVDEVDIMLEVKDKEISALKAVKVLKELNKLD ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DC n 1 5 DG n 1 6 DT n 1 7 DC n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DG n 1 12 DA n 1 13 DC n 1 14 DG n 1 15 DC n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DC n 2 6 DC n 2 7 64T n 2 8 5PY n 2 9 DG n 2 10 DA n 2 11 DC n 2 12 DG n 2 13 DA n 2 14 DC n 2 15 DG n 3 1 MET n 3 2 GLY n 3 3 HIS n 3 4 HIS n 3 5 HIS n 3 6 HIS n 3 7 HIS n 3 8 HIS n 3 9 HIS n 3 10 HIS n 3 11 HIS n 3 12 HIS n 3 13 SER n 3 14 SER n 3 15 GLY n 3 16 HIS n 3 17 ILE n 3 18 GLU n 3 19 GLY n 3 20 ARG n 3 21 HIS n 3 22 MET n 3 23 ARG n 3 24 VAL n 3 25 GLY n 3 26 TYR n 3 27 VAL n 3 28 SER n 3 29 THR n 3 30 ASN n 3 31 TYR n 3 32 SER n 3 33 LEU n 3 34 GLY n 3 35 CYS n 3 36 LYS n 3 37 ALA n 3 38 ASP n 3 39 LYS n 3 40 THR n 3 41 ILE n 3 42 LYS n 3 43 LEU n 3 44 SER n 3 45 SER n 3 46 LEU n 3 47 SER n 3 48 GLU n 3 49 GLU n 3 50 ARG n 3 51 VAL n 3 52 LEU n 3 53 LYS n 3 54 VAL n 3 55 SER n 3 56 SER n 3 57 SER n 3 58 ASN n 3 59 LEU n 3 60 LEU n 3 61 CYS n 3 62 LEU n 3 63 LYS n 3 64 ASN n 3 65 ILE n 3 66 LEU n 3 67 GLU n 3 68 TRP n 3 69 ASN n 3 70 LEU n 3 71 LYS n 3 72 HIS n 3 73 GLU n 3 74 ILE n 3 75 LEU n 3 76 PHE n 3 77 PHE n 3 78 ARG n 3 79 ILE n 3 80 SER n 3 81 SER n 3 82 ASN n 3 83 THR n 3 84 ILE n 3 85 PRO n 3 86 LEU n 3 87 ALA n 3 88 SER n 3 89 HIS n 3 90 PRO n 3 91 LYS n 3 92 PHE n 3 93 HIS n 3 94 VAL n 3 95 ASN n 3 96 TRP n 3 97 LYS n 3 98 ASP n 3 99 LYS n 3 100 LEU n 3 101 SER n 3 102 HIS n 3 103 ILE n 3 104 LEU n 3 105 GLY n 3 106 ASP n 3 107 ILE n 3 108 GLY n 3 109 ASP n 3 110 PHE n 3 111 ILE n 3 112 LYS n 3 113 GLU n 3 114 ASN n 3 115 SER n 3 116 ILE n 3 117 ARG n 3 118 ILE n 3 119 SER n 3 120 MET n 3 121 HIS n 3 122 PRO n 3 123 GLY n 3 124 GLN n 3 125 TYR n 3 126 VAL n 3 127 VAL n 3 128 LEU n 3 129 ASN n 3 130 SER n 3 131 VAL n 3 132 ARG n 3 133 GLU n 3 134 GLU n 3 135 VAL n 3 136 VAL n 3 137 ARG n 3 138 SER n 3 139 SER n 3 140 ILE n 3 141 MET n 3 142 GLU n 3 143 LEU n 3 144 LYS n 3 145 TYR n 3 146 HIS n 3 147 ALA n 3 148 ASP n 3 149 LEU n 3 150 LEU n 3 151 ASP n 3 152 SER n 3 153 MET n 3 154 GLY n 3 155 ILE n 3 156 GLU n 3 157 GLY n 3 158 LYS n 3 159 ILE n 3 160 GLN n 3 161 ILE n 3 162 HIS n 3 163 VAL n 3 164 GLY n 3 165 SER n 3 166 SER n 3 167 MET n 3 168 ASN n 3 169 GLY n 3 170 LYS n 3 171 GLU n 3 172 GLU n 3 173 SER n 3 174 LEU n 3 175 ASN n 3 176 ARG n 3 177 PHE n 3 178 ILE n 3 179 GLU n 3 180 ASN n 3 181 PHE n 3 182 ARG n 3 183 LYS n 3 184 LEU n 3 185 PRO n 3 186 SER n 3 187 ASN n 3 188 ILE n 3 189 SER n 3 190 LYS n 3 191 ARG n 3 192 LEU n 3 193 VAL n 3 194 ILE n 3 195 GLU n 3 196 ASN n 3 197 ASP n 3 198 ASP n 3 199 LYS n 3 200 VAL n 3 201 PHE n 3 202 SER n 3 203 VAL n 3 204 LYS n 3 205 ASP n 3 206 CYS n 3 207 LEU n 3 208 TRP n 3 209 ILE n 3 210 SER n 3 211 GLU n 3 212 ARG n 3 213 THR n 3 214 GLY n 3 215 ILE n 3 216 PRO n 3 217 VAL n 3 218 ILE n 3 219 PHE n 3 220 ASP n 3 221 ASN n 3 222 LEU n 3 223 HIS n 3 224 HIS n 3 225 SER n 3 226 ILE n 3 227 LEU n 3 228 ASN n 3 229 ASN n 3 230 GLY n 3 231 GLU n 3 232 SER n 3 233 LEU n 3 234 ASN n 3 235 ASP n 3 236 ALA n 3 237 LEU n 3 238 SER n 3 239 LEU n 3 240 VAL n 3 241 ARG n 3 242 ARG n 3 243 THR n 3 244 TRP n 3 245 LYS n 3 246 ASP n 3 247 ARG n 3 248 PRO n 3 249 MET n 3 250 ILE n 3 251 ASP n 3 252 TYR n 3 253 SER n 3 254 GLU n 3 255 GLN n 3 256 GLU n 3 257 PRO n 3 258 GLY n 3 259 GLU n 3 260 LYS n 3 261 PRO n 3 262 GLY n 3 263 VAL n 3 264 HIS n 3 265 ALA n 3 266 THR n 3 267 THR n 3 268 ILE n 3 269 ASN n 3 270 GLU n 3 271 GLU n 3 272 ASN n 3 273 PHE n 3 274 ARG n 3 275 ARG n 3 276 PHE n 3 277 VAL n 3 278 ASN n 3 279 GLU n 3 280 VAL n 3 281 ASP n 3 282 GLU n 3 283 VAL n 3 284 ASP n 3 285 ILE n 3 286 MET n 3 287 LEU n 3 288 GLU n 3 289 VAL n 3 290 LYS n 3 291 ASP n 3 292 LYS n 3 293 GLU n 3 294 ILE n 3 295 SER n 3 296 ALA n 3 297 LEU n 3 298 LYS n 3 299 ALA n 3 300 VAL n 3 301 LYS n 3 302 VAL n 3 303 LEU n 3 304 LYS n 3 305 GLU n 3 306 LEU n 3 307 ASN n 3 308 LYS n 3 309 LEU n 3 310 ASP n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'uvdE, Saci_1096' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5PY 'DNA linking' n "1-(2'-DEOXY-5'-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-5-METHYLPYRIMIDIN-2(1H)-ONE" ? 'C10 H15 N2 O7 P' 306.209 64T 'DNA linking' n "5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H17 N2 O9 P' 340.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC B . n A 1 2 DG 2 2 2 DG DG B . n A 1 3 DT 3 3 3 DT DT B . n A 1 4 DC 4 4 4 DC DC B . n A 1 5 DG 5 5 5 DG DG B . n A 1 6 DT 6 6 6 DT DT B . n A 1 7 DC 7 7 7 DC DC B . n A 1 8 DA 8 8 8 DA DA B . n A 1 9 DA 9 9 9 DA DA B . n A 1 10 DG 10 10 10 DG DG B . n A 1 11 DG 11 11 11 DG DG B . n A 1 12 DA 12 12 12 DA DA B . n A 1 13 DC 13 13 13 DC DC B . n A 1 14 DG 14 14 14 DG DG B . n A 1 15 DC 15 15 15 DC DC B . n B 2 1 DG 1 1 1 DG DG C . n B 2 2 DC 2 2 2 DC DC C . n B 2 3 DG 3 3 3 DG DG C . n B 2 4 DT 4 4 4 DT DT C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DC 6 6 6 DC DC C . n B 2 7 64T 7 7 7 64T 64T C . n B 2 8 5PY 8 8 8 5PY 5PY C . n B 2 9 DG 9 9 9 DG DG C . n B 2 10 DA 10 10 10 DA DA C . n B 2 11 DC 11 11 11 DC DC C . n B 2 12 DG 12 12 12 DG DG C . n B 2 13 DA 13 13 13 DA DA C . n B 2 14 DC 14 14 14 DC DC C . n B 2 15 DG 15 15 15 DG DG C . n C 3 1 MET 1 -20 ? ? ? A . n C 3 2 GLY 2 -19 ? ? ? A . n C 3 3 HIS 3 -18 ? ? ? A . n C 3 4 HIS 4 -17 ? ? ? A . n C 3 5 HIS 5 -16 ? ? ? A . n C 3 6 HIS 6 -15 ? ? ? A . n C 3 7 HIS 7 -14 ? ? ? A . n C 3 8 HIS 8 -13 ? ? ? A . n C 3 9 HIS 9 -12 ? ? ? A . n C 3 10 HIS 10 -11 ? ? ? A . n C 3 11 HIS 11 -10 ? ? ? A . n C 3 12 HIS 12 -9 ? ? ? A . n C 3 13 SER 13 -8 ? ? ? A . n C 3 14 SER 14 -7 ? ? ? A . n C 3 15 GLY 15 -6 ? ? ? A . n C 3 16 HIS 16 -5 ? ? ? A . n C 3 17 ILE 17 -4 ? ? ? A . n C 3 18 GLU 18 -3 -3 GLU GLU A . n C 3 19 GLY 19 -2 -2 GLY GLY A . n C 3 20 ARG 20 -1 -1 ARG ARG A . n C 3 21 HIS 21 0 0 HIS HIS A . n C 3 22 MET 22 1 1 MET MET A . n C 3 23 ARG 23 2 2 ARG ARG A . n C 3 24 VAL 24 3 3 VAL VAL A . n C 3 25 GLY 25 4 4 GLY GLY A . n C 3 26 TYR 26 5 5 TYR TYR A . n C 3 27 VAL 27 6 6 VAL VAL A . n C 3 28 SER 28 7 7 SER SER A . n C 3 29 THR 29 8 8 THR THR A . n C 3 30 ASN 30 9 9 ASN ASN A . n C 3 31 TYR 31 10 10 TYR TYR A . n C 3 32 SER 32 11 11 SER SER A . n C 3 33 LEU 33 12 12 LEU LEU A . n C 3 34 GLY 34 13 13 GLY GLY A . n C 3 35 CYS 35 14 14 CYS CYS A . n C 3 36 LYS 36 15 15 LYS LYS A . n C 3 37 ALA 37 16 16 ALA ALA A . n C 3 38 ASP 38 17 17 ASP ASP A . n C 3 39 LYS 39 18 18 LYS LYS A . n C 3 40 THR 40 19 19 THR THR A . n C 3 41 ILE 41 20 20 ILE ILE A . n C 3 42 LYS 42 21 21 LYS LYS A . n C 3 43 LEU 43 22 22 LEU LEU A . n C 3 44 SER 44 23 23 SER SER A . n C 3 45 SER 45 24 24 SER SER A . n C 3 46 LEU 46 25 25 LEU LEU A . n C 3 47 SER 47 26 26 SER SER A . n C 3 48 GLU 48 27 27 GLU GLU A . n C 3 49 GLU 49 28 28 GLU GLU A . n C 3 50 ARG 50 29 29 ARG ARG A . n C 3 51 VAL 51 30 30 VAL VAL A . n C 3 52 LEU 52 31 31 LEU LEU A . n C 3 53 LYS 53 32 32 LYS LYS A . n C 3 54 VAL 54 33 33 VAL VAL A . n C 3 55 SER 55 34 34 SER SER A . n C 3 56 SER 56 35 35 SER SER A . n C 3 57 SER 57 36 36 SER SER A . n C 3 58 ASN 58 37 37 ASN ASN A . n C 3 59 LEU 59 38 38 LEU LEU A . n C 3 60 LEU 60 39 39 LEU LEU A . n C 3 61 CYS 61 40 40 CYS CYS A . n C 3 62 LEU 62 41 41 LEU LEU A . n C 3 63 LYS 63 42 42 LYS LYS A . n C 3 64 ASN 64 43 43 ASN ASN A . n C 3 65 ILE 65 44 44 ILE ILE A . n C 3 66 LEU 66 45 45 LEU LEU A . n C 3 67 GLU 67 46 46 GLU GLU A . n C 3 68 TRP 68 47 47 TRP TRP A . n C 3 69 ASN 69 48 48 ASN ASN A . n C 3 70 LEU 70 49 49 LEU LEU A . n C 3 71 LYS 71 50 50 LYS LYS A . n C 3 72 HIS 72 51 51 HIS HIS A . n C 3 73 GLU 73 52 52 GLU GLU A . n C 3 74 ILE 74 53 53 ILE ILE A . n C 3 75 LEU 75 54 54 LEU LEU A . n C 3 76 PHE 76 55 55 PHE PHE A . n C 3 77 PHE 77 56 56 PHE PHE A . n C 3 78 ARG 78 57 57 ARG ARG A . n C 3 79 ILE 79 58 58 ILE ILE A . n C 3 80 SER 80 59 59 SER SER A . n C 3 81 SER 81 60 60 SER SER A . n C 3 82 ASN 82 61 61 ASN ASN A . n C 3 83 THR 83 62 62 THR THR A . n C 3 84 ILE 84 63 63 ILE ILE A . n C 3 85 PRO 85 64 64 PRO PRO A . n C 3 86 LEU 86 65 65 LEU LEU A . n C 3 87 ALA 87 66 66 ALA ALA A . n C 3 88 SER 88 67 67 SER SER A . n C 3 89 HIS 89 68 68 HIS HIS A . n C 3 90 PRO 90 69 69 PRO PRO A . n C 3 91 LYS 91 70 70 LYS LYS A . n C 3 92 PHE 92 71 71 PHE PHE A . n C 3 93 HIS 93 72 72 HIS HIS A . n C 3 94 VAL 94 73 73 VAL VAL A . n C 3 95 ASN 95 74 74 ASN ASN A . n C 3 96 TRP 96 75 75 TRP TRP A . n C 3 97 LYS 97 76 76 LYS LYS A . n C 3 98 ASP 98 77 77 ASP ASP A . n C 3 99 LYS 99 78 78 LYS LYS A . n C 3 100 LEU 100 79 79 LEU LEU A . n C 3 101 SER 101 80 80 SER SER A . n C 3 102 HIS 102 81 81 HIS HIS A . n C 3 103 ILE 103 82 82 ILE ILE A . n C 3 104 LEU 104 83 83 LEU LEU A . n C 3 105 GLY 105 84 84 GLY GLY A . n C 3 106 ASP 106 85 85 ASP ASP A . n C 3 107 ILE 107 86 86 ILE ILE A . n C 3 108 GLY 108 87 87 GLY GLY A . n C 3 109 ASP 109 88 88 ASP ASP A . n C 3 110 PHE 110 89 89 PHE PHE A . n C 3 111 ILE 111 90 90 ILE ILE A . n C 3 112 LYS 112 91 91 LYS LYS A . n C 3 113 GLU 113 92 92 GLU GLU A . n C 3 114 ASN 114 93 93 ASN ASN A . n C 3 115 SER 115 94 94 SER SER A . n C 3 116 ILE 116 95 95 ILE ILE A . n C 3 117 ARG 117 96 96 ARG ARG A . n C 3 118 ILE 118 97 97 ILE ILE A . n C 3 119 SER 119 98 98 SER SER A . n C 3 120 MET 120 99 99 MET MET A . n C 3 121 HIS 121 100 100 HIS HIS A . n C 3 122 PRO 122 101 101 PRO PRO A . n C 3 123 GLY 123 102 102 GLY GLY A . n C 3 124 GLN 124 103 103 GLN GLN A . n C 3 125 TYR 125 104 104 TYR TYR A . n C 3 126 VAL 126 105 105 VAL VAL A . n C 3 127 VAL 127 106 106 VAL VAL A . n C 3 128 LEU 128 107 107 LEU LEU A . n C 3 129 ASN 129 108 108 ASN ASN A . n C 3 130 SER 130 109 109 SER SER A . n C 3 131 VAL 131 110 110 VAL VAL A . n C 3 132 ARG 132 111 111 ARG ARG A . n C 3 133 GLU 133 112 112 GLU GLU A . n C 3 134 GLU 134 113 113 GLU GLU A . n C 3 135 VAL 135 114 114 VAL VAL A . n C 3 136 VAL 136 115 115 VAL VAL A . n C 3 137 ARG 137 116 116 ARG ARG A . n C 3 138 SER 138 117 117 SER SER A . n C 3 139 SER 139 118 118 SER SER A . n C 3 140 ILE 140 119 119 ILE ILE A . n C 3 141 MET 141 120 120 MET MET A . n C 3 142 GLU 142 121 121 GLU GLU A . n C 3 143 LEU 143 122 122 LEU LEU A . n C 3 144 LYS 144 123 123 LYS LYS A . n C 3 145 TYR 145 124 124 TYR TYR A . n C 3 146 HIS 146 125 125 HIS HIS A . n C 3 147 ALA 147 126 126 ALA ALA A . n C 3 148 ASP 148 127 127 ASP ASP A . n C 3 149 LEU 149 128 128 LEU LEU A . n C 3 150 LEU 150 129 129 LEU LEU A . n C 3 151 ASP 151 130 130 ASP ASP A . n C 3 152 SER 152 131 131 SER SER A . n C 3 153 MET 153 132 132 MET MET A . n C 3 154 GLY 154 133 133 GLY GLY A . n C 3 155 ILE 155 134 134 ILE ILE A . n C 3 156 GLU 156 135 135 GLU GLU A . n C 3 157 GLY 157 136 136 GLY GLY A . n C 3 158 LYS 158 137 137 LYS LYS A . n C 3 159 ILE 159 138 138 ILE ILE A . n C 3 160 GLN 160 139 139 GLN GLN A . n C 3 161 ILE 161 140 140 ILE ILE A . n C 3 162 HIS 162 141 141 HIS HIS A . n C 3 163 VAL 163 142 142 VAL VAL A . n C 3 164 GLY 164 143 143 GLY GLY A . n C 3 165 SER 165 144 144 SER SER A . n C 3 166 SER 166 145 145 SER SER A . n C 3 167 MET 167 146 146 MET MET A . n C 3 168 ASN 168 147 147 ASN ASN A . n C 3 169 GLY 169 148 148 GLY GLY A . n C 3 170 LYS 170 149 149 LYS LYS A . n C 3 171 GLU 171 150 150 GLU GLU A . n C 3 172 GLU 172 151 151 GLU GLU A . n C 3 173 SER 173 152 152 SER SER A . n C 3 174 LEU 174 153 153 LEU LEU A . n C 3 175 ASN 175 154 154 ASN ASN A . n C 3 176 ARG 176 155 155 ARG ARG A . n C 3 177 PHE 177 156 156 PHE PHE A . n C 3 178 ILE 178 157 157 ILE ILE A . n C 3 179 GLU 179 158 158 GLU GLU A . n C 3 180 ASN 180 159 159 ASN ASN A . n C 3 181 PHE 181 160 160 PHE PHE A . n C 3 182 ARG 182 161 161 ARG ARG A . n C 3 183 LYS 183 162 162 LYS LYS A . n C 3 184 LEU 184 163 163 LEU LEU A . n C 3 185 PRO 185 164 164 PRO PRO A . n C 3 186 SER 186 165 165 SER SER A . n C 3 187 ASN 187 166 166 ASN ASN A . n C 3 188 ILE 188 167 167 ILE ILE A . n C 3 189 SER 189 168 168 SER SER A . n C 3 190 LYS 190 169 169 LYS LYS A . n C 3 191 ARG 191 170 170 ARG ARG A . n C 3 192 LEU 192 171 171 LEU LEU A . n C 3 193 VAL 193 172 172 VAL VAL A . n C 3 194 ILE 194 173 173 ILE ILE A . n C 3 195 GLU 195 174 174 GLU GLU A . n C 3 196 ASN 196 175 175 ASN ASN A . n C 3 197 ASP 197 176 176 ASP ASP A . n C 3 198 ASP 198 177 177 ASP ASP A . n C 3 199 LYS 199 178 178 LYS LYS A . n C 3 200 VAL 200 179 179 VAL VAL A . n C 3 201 PHE 201 180 180 PHE PHE A . n C 3 202 SER 202 181 181 SER SER A . n C 3 203 VAL 203 182 182 VAL VAL A . n C 3 204 LYS 204 183 183 LYS LYS A . n C 3 205 ASP 205 184 184 ASP ASP A . n C 3 206 CYS 206 185 185 CYS CYS A . n C 3 207 LEU 207 186 186 LEU LEU A . n C 3 208 TRP 208 187 187 TRP TRP A . n C 3 209 ILE 209 188 188 ILE ILE A . n C 3 210 SER 210 189 189 SER SER A . n C 3 211 GLU 211 190 190 GLU GLU A . n C 3 212 ARG 212 191 191 ARG ARG A . n C 3 213 THR 213 192 192 THR THR A . n C 3 214 GLY 214 193 193 GLY GLY A . n C 3 215 ILE 215 194 194 ILE ILE A . n C 3 216 PRO 216 195 195 PRO PRO A . n C 3 217 VAL 217 196 196 VAL VAL A . n C 3 218 ILE 218 197 197 ILE ILE A . n C 3 219 PHE 219 198 198 PHE PHE A . n C 3 220 ASP 220 199 199 ASP ASP A . n C 3 221 ASN 221 200 200 ASN ASN A . n C 3 222 LEU 222 201 201 LEU LEU A . n C 3 223 HIS 223 202 202 HIS HIS A . n C 3 224 HIS 224 203 203 HIS HIS A . n C 3 225 SER 225 204 204 SER SER A . n C 3 226 ILE 226 205 205 ILE ILE A . n C 3 227 LEU 227 206 206 LEU LEU A . n C 3 228 ASN 228 207 207 ASN ASN A . n C 3 229 ASN 229 208 208 ASN ASN A . n C 3 230 GLY 230 209 209 GLY GLY A . n C 3 231 GLU 231 210 210 GLU GLU A . n C 3 232 SER 232 211 211 SER SER A . n C 3 233 LEU 233 212 212 LEU LEU A . n C 3 234 ASN 234 213 213 ASN ASN A . n C 3 235 ASP 235 214 214 ASP ASP A . n C 3 236 ALA 236 215 215 ALA ALA A . n C 3 237 LEU 237 216 216 LEU LEU A . n C 3 238 SER 238 217 217 SER SER A . n C 3 239 LEU 239 218 218 LEU LEU A . n C 3 240 VAL 240 219 219 VAL VAL A . n C 3 241 ARG 241 220 220 ARG ARG A . n C 3 242 ARG 242 221 221 ARG ARG A . n C 3 243 THR 243 222 222 THR THR A . n C 3 244 TRP 244 223 223 TRP TRP A . n C 3 245 LYS 245 224 224 LYS LYS A . n C 3 246 ASP 246 225 225 ASP ASP A . n C 3 247 ARG 247 226 226 ARG ARG A . n C 3 248 PRO 248 227 227 PRO PRO A . n C 3 249 MET 249 228 228 MET MET A . n C 3 250 ILE 250 229 229 ILE ILE A . n C 3 251 ASP 251 230 230 ASP ASP A . n C 3 252 TYR 252 231 231 TYR TYR A . n C 3 253 SER 253 232 232 SER SER A . n C 3 254 GLU 254 233 233 GLU GLU A . n C 3 255 GLN 255 234 234 GLN GLN A . n C 3 256 GLU 256 235 235 GLU GLU A . n C 3 257 PRO 257 236 236 PRO PRO A . n C 3 258 GLY 258 237 237 GLY GLY A . n C 3 259 GLU 259 238 238 GLU GLU A . n C 3 260 LYS 260 239 239 LYS LYS A . n C 3 261 PRO 261 240 240 PRO PRO A . n C 3 262 GLY 262 241 241 GLY GLY A . n C 3 263 VAL 263 242 242 VAL VAL A . n C 3 264 HIS 264 243 243 HIS HIS A . n C 3 265 ALA 265 244 244 ALA ALA A . n C 3 266 THR 266 245 245 THR THR A . n C 3 267 THR 267 246 246 THR THR A . n C 3 268 ILE 268 247 247 ILE ILE A . n C 3 269 ASN 269 248 248 ASN ASN A . n C 3 270 GLU 270 249 249 GLU GLU A . n C 3 271 GLU 271 250 250 GLU GLU A . n C 3 272 ASN 272 251 251 ASN ASN A . n C 3 273 PHE 273 252 252 PHE PHE A . n C 3 274 ARG 274 253 253 ARG ARG A . n C 3 275 ARG 275 254 254 ARG ARG A . n C 3 276 PHE 276 255 255 PHE PHE A . n C 3 277 VAL 277 256 256 VAL VAL A . n C 3 278 ASN 278 257 257 ASN ASN A . n C 3 279 GLU 279 258 258 GLU GLU A . n C 3 280 VAL 280 259 259 VAL VAL A . n C 3 281 ASP 281 260 260 ASP ASP A . n C 3 282 GLU 282 261 261 GLU GLU A . n C 3 283 VAL 283 262 262 VAL VAL A . n C 3 284 ASP 284 263 263 ASP ASP A . n C 3 285 ILE 285 264 264 ILE ILE A . n C 3 286 MET 286 265 265 MET MET A . n C 3 287 LEU 287 266 266 LEU LEU A . n C 3 288 GLU 288 267 267 GLU GLU A . n C 3 289 VAL 289 268 268 VAL VAL A . n C 3 290 LYS 290 269 269 LYS LYS A . n C 3 291 ASP 291 270 270 ASP ASP A . n C 3 292 LYS 292 271 271 LYS LYS A . n C 3 293 GLU 293 272 272 GLU GLU A . n C 3 294 ILE 294 273 273 ILE ILE A . n C 3 295 SER 295 274 274 SER SER A . n C 3 296 ALA 296 275 275 ALA ALA A . n C 3 297 LEU 297 276 276 LEU LEU A . n C 3 298 LYS 298 277 277 LYS LYS A . n C 3 299 ALA 299 278 278 ALA ALA A . n C 3 300 VAL 300 279 279 VAL VAL A . n C 3 301 LYS 301 280 280 LYS LYS A . n C 3 302 VAL 302 281 281 VAL VAL A . n C 3 303 LEU 303 282 282 LEU LEU A . n C 3 304 LYS 304 283 283 LYS LYS A . n C 3 305 GLU 305 284 284 GLU GLU A . n C 3 306 LEU 306 285 285 LEU LEU A . n C 3 307 ASN 307 286 286 ASN ASN A . n C 3 308 LYS 308 287 287 LYS LYS A . n C 3 309 LEU 309 288 288 LEU LEU A . n C 3 310 ASP 310 289 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 1 301 1 SO4 SO4 A . E 4 SO4 1 302 2 SO4 SO4 A . F 5 HOH 1 401 1 HOH HOH A . F 5 HOH 2 402 2 HOH HOH A . F 5 HOH 3 403 3 HOH HOH A . F 5 HOH 4 404 4 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.7.0024 ? 3 iMOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4GLE _cell.length_a 57.200 _cell.length_b 112.510 _cell.length_c 153.850 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GLE _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GLE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '30% PEG2000 MME, 100 mM acetate buffer, pH 4.6, 200 mM ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2012-05-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond(001)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 4GLE _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 52.834 _reflns.d_resolution_high 2.70 _reflns.number_obs 14041 _reflns.number_all 14055 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.121 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.832 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GLE _refine.ls_number_reflns_obs 13316 _refine.ls_number_reflns_all 13316 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 52.834 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.19475 _refine.ls_R_factor_all 0.19475 _refine.ls_R_factor_R_work 0.19139 _refine.ls_R_factor_R_free 0.26184 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 698 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.906 _refine.B_iso_mean 56.704 _refine.aniso_B[1][1] -3.20 _refine.aniso_B[2][2] -1.30 _refine.aniso_B[3][3] 4.50 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.pdbx_starting_model 'PDB ENTRY 3TC3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.763 _refine.pdbx_overall_ESU_R_Free 0.340 _refine.overall_SU_ML 0.261 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 13.216 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2353 _refine_hist.pdbx_number_atoms_nucleic_acid 609 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2976 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 52.834 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.011 0.017 ? 3086 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.006 0.020 ? 2694 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.569 1.794 ? 4287 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.271 3.001 ? 6231 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.189 5.000 ? 291 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 39.244 24.464 ? 112 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.811 15.000 ? 469 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11.767 15.000 ? 16 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.085 0.200 ? 457 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 3014 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 687 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.770 _refine_ls_shell.number_reflns_R_work 945 _refine_ls_shell.R_factor_R_work 0.327 _refine_ls_shell.percent_reflns_obs 98.21 _refine_ls_shell.R_factor_R_free 0.421 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4GLE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GLE _struct.title 'SacUVDE in complex with 6-4PP-containing DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GLE _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'TIM barrel, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q4J9T1_SULAC Q4J9T1 3 ;MRVGYVSTNYSLGCKADKTIKLSSLSEERVLKVSSSNLLCLKNILEWNLKHEILFFRISSNTIPLASHPKFHVNWKDKLS HILGDIGDFIKENSIRISMHPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMNGKEESLNRFIENF RKLPSNISKRLVIENDDKVFSVKDCLWISERTGIPVIFDNLHHSILNNGESLNDALSLVRRTWKDRPMIDYSEQEPGEKP GVHATTINEENFRRFVNEVDEVDIMLEVKDKEISALKAVKVLKELNKLD ; 1 ? 2 PDB 4GLE 4GLE 1 CGTCGTCAAGGACGC 1 ? 3 PDB 4GLE 4GLE 2 'GCGTCC(64T)(5PY)GACGACG' 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GLE A 22 ? 310 ? Q4J9T1 1 ? 289 ? 1 289 2 2 4GLE B 1 ? 15 ? 4GLE 1 ? 15 ? 1 15 3 3 4GLE C 1 ? 15 ? 4GLE 1 ? 15 ? 1 15 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GLE MET A 1 ? UNP Q4J9T1 ? ? 'expression tag' -20 1 1 4GLE GLY A 2 ? UNP Q4J9T1 ? ? 'expression tag' -19 2 1 4GLE HIS A 3 ? UNP Q4J9T1 ? ? 'expression tag' -18 3 1 4GLE HIS A 4 ? UNP Q4J9T1 ? ? 'expression tag' -17 4 1 4GLE HIS A 5 ? UNP Q4J9T1 ? ? 'expression tag' -16 5 1 4GLE HIS A 6 ? UNP Q4J9T1 ? ? 'expression tag' -15 6 1 4GLE HIS A 7 ? UNP Q4J9T1 ? ? 'expression tag' -14 7 1 4GLE HIS A 8 ? UNP Q4J9T1 ? ? 'expression tag' -13 8 1 4GLE HIS A 9 ? UNP Q4J9T1 ? ? 'expression tag' -12 9 1 4GLE HIS A 10 ? UNP Q4J9T1 ? ? 'expression tag' -11 10 1 4GLE HIS A 11 ? UNP Q4J9T1 ? ? 'expression tag' -10 11 1 4GLE HIS A 12 ? UNP Q4J9T1 ? ? 'expression tag' -9 12 1 4GLE SER A 13 ? UNP Q4J9T1 ? ? 'expression tag' -8 13 1 4GLE SER A 14 ? UNP Q4J9T1 ? ? 'expression tag' -7 14 1 4GLE GLY A 15 ? UNP Q4J9T1 ? ? 'expression tag' -6 15 1 4GLE HIS A 16 ? UNP Q4J9T1 ? ? 'expression tag' -5 16 1 4GLE ILE A 17 ? UNP Q4J9T1 ? ? 'expression tag' -4 17 1 4GLE GLU A 18 ? UNP Q4J9T1 ? ? 'expression tag' -3 18 1 4GLE GLY A 19 ? UNP Q4J9T1 ? ? 'expression tag' -2 19 1 4GLE ARG A 20 ? UNP Q4J9T1 ? ? 'expression tag' -1 20 1 4GLE HIS A 21 ? UNP Q4J9T1 ? ? 'expression tag' 0 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4870 ? 1 MORE -43 ? 1 'SSA (A^2)' 16920 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 30 ? GLY C 34 ? ASN A 9 GLY A 13 5 ? 5 HELX_P HELX_P2 2 LYS C 42 ? LEU C 46 ? LYS A 21 LEU A 25 5 ? 5 HELX_P HELX_P3 3 SER C 47 ? HIS C 72 ? SER A 26 HIS A 51 1 ? 26 HELX_P HELX_P4 4 ASN C 95 ? LEU C 100 ? ASN A 74 LEU A 79 1 ? 6 HELX_P HELX_P5 5 LEU C 100 ? ASN C 114 ? LEU A 79 ASN A 93 1 ? 15 HELX_P HELX_P6 6 ARG C 132 ? MET C 153 ? ARG A 111 MET A 132 1 ? 22 HELX_P HELX_P7 7 GLY C 169 ? ARG C 182 ? GLY A 148 ARG A 161 1 ? 14 HELX_P HELX_P8 8 PRO C 185 ? LYS C 190 ? PRO A 164 LYS A 169 1 ? 6 HELX_P HELX_P9 9 SER C 202 ? GLY C 214 ? SER A 181 GLY A 193 1 ? 13 HELX_P HELX_P10 10 ASN C 221 ? LEU C 227 ? ASN A 200 LEU A 206 1 ? 7 HELX_P HELX_P11 11 SER C 232 ? ARG C 242 ? SER A 211 ARG A 221 1 ? 11 HELX_P HELX_P12 12 ASN C 269 ? ASN C 278 ? ASN A 248 ASN A 257 1 ? 10 HELX_P HELX_P13 13 LYS C 292 ? LEU C 306 ? LYS A 271 LEU A 285 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? C CYS 35 SG ? ? ? 1_555 C CYS 61 SG ? ? A CYS 14 A CYS 40 1_555 ? ? ? ? ? ? ? 2.046 ? ? covale1 covale both ? B DC 6 "O3'" ? ? ? 1_555 B 64T 7 P ? ? C DC 6 C 64T 7 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale2 covale both ? B 64T 7 "O3'" ? ? ? 1_555 B 5PY 8 P ? ? C 64T 7 C 5PY 8 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale3 covale none ? B 64T 7 C6 ? ? ? 1_555 B 5PY 8 C4 ? ? C 64T 7 C 5PY 8 1_555 ? ? ? ? ? ? ? 1.511 ? ? covale4 covale both ? B 5PY 8 "O3'" ? ? ? 1_555 B DG 9 P ? ? C 5PY 8 C DG 9 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 15 N1 ? ? B DC 1 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 15 O6 ? ? B DC 1 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 15 N2 ? ? B DC 1 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 14 N3 ? ? B DG 2 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 14 O2 ? ? B DG 2 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 14 N4 ? ? B DG 2 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 13 N1 ? ? B DT 3 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 13 N6 ? ? B DT 3 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 4 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 4 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 4 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 5 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 5 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 5 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 6 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 6 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 7 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 7 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 7 C DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 10 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 10 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 10 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 11 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 11 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 11 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 12 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 12 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 13 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 13 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 13 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 14 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 14 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 14 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 15 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 15 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 15 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id C _pdbx_modification_feature.label_seq_id 35 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id C _pdbx_modification_feature.modified_residue_label_seq_id 61 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 14 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 40 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET C 22 ? VAL C 27 ? MET A 1 VAL A 6 A 2 PHE C 76 ? ILE C 79 ? PHE A 55 ILE A 58 A 3 ARG C 117 ? MET C 120 ? ARG A 96 MET A 99 A 4 LYS C 158 ? HIS C 162 ? LYS A 137 HIS A 141 A 5 LEU C 192 ? GLU C 195 ? LEU A 171 GLU A 174 A 6 VAL C 217 ? ASP C 220 ? VAL A 196 ASP A 199 A 7 MET C 249 ? TYR C 252 ? MET A 228 TYR A 231 A 8 VAL C 283 ? LEU C 287 ? VAL A 262 LEU A 266 A 9 MET C 22 ? VAL C 27 ? MET A 1 VAL A 6 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR C 26 ? N TYR A 5 O ARG C 78 ? O ARG A 57 A 2 3 N ILE C 79 ? N ILE A 58 O SER C 119 ? O SER A 98 A 3 4 N MET C 120 ? N MET A 99 O GLN C 160 ? O GLN A 139 A 4 5 N ILE C 161 ? N ILE A 140 O GLU C 195 ? O GLU A 174 A 5 6 N ILE C 194 ? N ILE A 173 O ILE C 218 ? O ILE A 197 A 6 7 N PHE C 219 ? N PHE A 198 O ASP C 251 ? O ASP A 230 A 7 8 N ILE C 250 ? N ILE A 229 O MET C 286 ? O MET A 265 A 8 9 O ILE C 285 ? O ILE A 264 N ARG C 23 ? N ARG A 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 3 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software A SO4 302 ? 5 'BINDING SITE FOR RESIDUE SO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS C 97 ? LYS A 76 . ? 8_455 ? 2 AC1 3 SER C 115 ? SER A 94 . ? 1_555 ? 3 AC1 3 LYS C 144 ? LYS A 123 . ? 8_455 ? 4 AC2 5 ARG C 117 ? ARG A 96 . ? 1_555 ? 5 AC2 5 GLY C 157 ? GLY A 136 . ? 1_555 ? 6 AC2 5 LYS C 158 ? LYS A 137 . ? 1_555 ? 7 AC2 5 ASP C 246 ? ASP A 225 . ? 1_555 ? 8 AC2 5 HOH F . ? HOH A 401 . ? 1_555 ? # _pdbx_entry_details.entry_id 4GLE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" C DG 1 ? ? "C4'" C DG 1 ? ? "O4'" C DG 1 ? ? 121.64 109.80 11.84 1.10 N 2 1 "C3'" C DA 10 ? ? "C2'" C DA 10 ? ? "C1'" C DA 10 ? ? 97.46 102.40 -4.94 0.80 N 3 1 NE A ARG -1 ? ? CZ A ARG -1 ? ? NH1 A ARG -1 ? ? 124.41 120.30 4.11 0.50 N 4 1 C A HIS 100 ? ? N A PRO 101 ? ? CA A PRO 101 ? ? 129.91 119.30 10.61 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A -1 ? ? -65.83 -123.39 2 1 HIS A 0 ? ? 109.69 -12.96 3 1 SER A 7 ? ? 81.02 -53.29 4 1 SER A 11 ? ? -68.72 33.24 5 1 LEU A 12 ? ? -147.90 -6.62 6 1 CYS A 14 ? ? -159.68 64.73 7 1 PRO A 101 ? ? -56.62 -4.33 8 1 ASN A 108 ? ? -98.28 37.10 9 1 GLU A 135 ? ? -86.65 -86.09 10 1 VAL A 179 ? ? -107.80 -70.18 11 1 ASP A 225 ? ? -100.21 -150.87 12 1 LYS A 271 ? ? 44.69 -105.92 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 64T 7 C 64T 7 ? DT "5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE" 2 B 5PY 8 C 5PY 8 ? DT ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -20 ? C MET 1 2 1 Y 1 A GLY -19 ? C GLY 2 3 1 Y 1 A HIS -18 ? C HIS 3 4 1 Y 1 A HIS -17 ? C HIS 4 5 1 Y 1 A HIS -16 ? C HIS 5 6 1 Y 1 A HIS -15 ? C HIS 6 7 1 Y 1 A HIS -14 ? C HIS 7 8 1 Y 1 A HIS -13 ? C HIS 8 9 1 Y 1 A HIS -12 ? C HIS 9 10 1 Y 1 A HIS -11 ? C HIS 10 11 1 Y 1 A HIS -10 ? C HIS 11 12 1 Y 1 A HIS -9 ? C HIS 12 13 1 Y 1 A SER -8 ? C SER 13 14 1 Y 1 A SER -7 ? C SER 14 15 1 Y 1 A GLY -6 ? C GLY 15 16 1 Y 1 A HIS -5 ? C HIS 16 17 1 Y 1 A ILE -4 ? C ILE 17 18 1 Y 1 A ASP 289 ? C ASP 310 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5PY P P N N 1 5PY OP2 O N N 2 5PY OP1 O N N 3 5PY "O5'" O N N 4 5PY "C5'" C N N 5 5PY "C4'" C N R 6 5PY "O4'" O N N 7 5PY "C1'" C N R 8 5PY N1 N N N 9 5PY C2 C N N 10 5PY O2 O N N 11 5PY N3 N N N 12 5PY C4 C N N 13 5PY C5 C N N 14 5PY C5M C N N 15 5PY C6 C N N 16 5PY "C2'" C N N 17 5PY "C3'" C N S 18 5PY "O3'" O N N 19 5PY OP3 O N N 20 5PY H71 H N N 21 5PY H72 H N N 22 5PY H73 H N N 23 5PY H4 H N N 24 5PY H6 H N N 25 5PY "H1'" H N N 26 5PY "H2'" H N N 27 5PY "H2''" H N N 28 5PY "H3'" H N N 29 5PY "HO3'" H N N 30 5PY "H4'" H N N 31 5PY "H5'" H N N 32 5PY "H5''" H N N 33 5PY HOP2 H N N 34 5PY HOP3 H N N 35 64T P P N N 36 64T OP1 O N N 37 64T OP2 O N N 38 64T "O5'" O N N 39 64T "C5'" C N N 40 64T "C4'" C N R 41 64T "O4'" O N N 42 64T "C3'" C N S 43 64T "O3'" O N N 44 64T "C2'" C N N 45 64T "C1'" C N R 46 64T N1 N N N 47 64T C2 C N N 48 64T O2 O N N 49 64T N3 N N N 50 64T C4 C N N 51 64T O4 O N N 52 64T C5 C N R 53 64T C5M C N N 54 64T O5 O N N 55 64T C6 C N N 56 64T OP3 O N N 57 64T HOP2 H N N 58 64T "H5'" H N N 59 64T "H5''" H N N 60 64T "H4'" H N N 61 64T "H3'" H N N 62 64T "HO3'" H N N 63 64T "H2'" H N N 64 64T "H2''" H N N 65 64T "H1'" H N N 66 64T H3 H N N 67 64T H71 H N N 68 64T H72 H N N 69 64T H73 H N N 70 64T HO5 H N N 71 64T H61 H N N 72 64T H62 H N N 73 64T HOP3 H N N 74 ALA N N N N 75 ALA CA C N S 76 ALA C C N N 77 ALA O O N N 78 ALA CB C N N 79 ALA OXT O N N 80 ALA H H N N 81 ALA H2 H N N 82 ALA HA H N N 83 ALA HB1 H N N 84 ALA HB2 H N N 85 ALA HB3 H N N 86 ALA HXT H N N 87 ARG N N N N 88 ARG CA C N S 89 ARG C C N N 90 ARG O O N N 91 ARG CB C N N 92 ARG CG C N N 93 ARG CD C N N 94 ARG NE N N N 95 ARG CZ C N N 96 ARG NH1 N N N 97 ARG NH2 N N N 98 ARG OXT O N N 99 ARG H H N N 100 ARG H2 H N N 101 ARG HA H N N 102 ARG HB2 H N N 103 ARG HB3 H N N 104 ARG HG2 H N N 105 ARG HG3 H N N 106 ARG HD2 H N N 107 ARG HD3 H N N 108 ARG HE H N N 109 ARG HH11 H N N 110 ARG HH12 H N N 111 ARG HH21 H N N 112 ARG HH22 H N N 113 ARG HXT H N N 114 ASN N N N N 115 ASN CA C N S 116 ASN C C N N 117 ASN O O N N 118 ASN CB C N N 119 ASN CG C N N 120 ASN OD1 O N N 121 ASN ND2 N N N 122 ASN OXT O N N 123 ASN H H N N 124 ASN H2 H N N 125 ASN HA H N N 126 ASN HB2 H N N 127 ASN HB3 H N N 128 ASN HD21 H N N 129 ASN HD22 H N N 130 ASN HXT H N N 131 ASP N N N N 132 ASP CA C N S 133 ASP C C N N 134 ASP O O N N 135 ASP CB C N N 136 ASP CG C N N 137 ASP OD1 O N N 138 ASP OD2 O N N 139 ASP OXT O N N 140 ASP H H N N 141 ASP H2 H N N 142 ASP HA H N N 143 ASP HB2 H N N 144 ASP HB3 H N N 145 ASP HD2 H N N 146 ASP HXT H N N 147 CYS N N N N 148 CYS CA C N R 149 CYS C C N N 150 CYS O O N N 151 CYS CB C N N 152 CYS SG S N N 153 CYS OXT O N N 154 CYS H H N N 155 CYS H2 H N N 156 CYS HA H N N 157 CYS HB2 H N N 158 CYS HB3 H N N 159 CYS HG H N N 160 CYS HXT H N N 161 DA OP3 O N N 162 DA P P N N 163 DA OP1 O N N 164 DA OP2 O N N 165 DA "O5'" O N N 166 DA "C5'" C N N 167 DA "C4'" C N R 168 DA "O4'" O N N 169 DA "C3'" C N S 170 DA "O3'" O N N 171 DA "C2'" C N N 172 DA "C1'" C N R 173 DA N9 N Y N 174 DA C8 C Y N 175 DA N7 N Y N 176 DA C5 C Y N 177 DA C6 C Y N 178 DA N6 N N N 179 DA N1 N Y N 180 DA C2 C Y N 181 DA N3 N Y N 182 DA C4 C Y N 183 DA HOP3 H N N 184 DA HOP2 H N N 185 DA "H5'" H N N 186 DA "H5''" H N N 187 DA "H4'" H N N 188 DA "H3'" H N N 189 DA "HO3'" H N N 190 DA "H2'" H N N 191 DA "H2''" H N N 192 DA "H1'" H N N 193 DA H8 H N N 194 DA H61 H N N 195 DA H62 H N N 196 DA H2 H N N 197 DC OP3 O N N 198 DC P P N N 199 DC OP1 O N N 200 DC OP2 O N N 201 DC "O5'" O N N 202 DC "C5'" C N N 203 DC "C4'" C N R 204 DC "O4'" O N N 205 DC "C3'" C N S 206 DC "O3'" O N N 207 DC "C2'" C N N 208 DC "C1'" C N R 209 DC N1 N N N 210 DC C2 C N N 211 DC O2 O N N 212 DC N3 N N N 213 DC C4 C N N 214 DC N4 N N N 215 DC C5 C N N 216 DC C6 C N N 217 DC HOP3 H N N 218 DC HOP2 H N N 219 DC "H5'" H N N 220 DC "H5''" H N N 221 DC "H4'" H N N 222 DC "H3'" H N N 223 DC "HO3'" H N N 224 DC "H2'" H N N 225 DC "H2''" H N N 226 DC "H1'" H N N 227 DC H41 H N N 228 DC H42 H N N 229 DC H5 H N N 230 DC H6 H N N 231 DG OP3 O N N 232 DG P P N N 233 DG OP1 O N N 234 DG OP2 O N N 235 DG "O5'" O N N 236 DG "C5'" C N N 237 DG "C4'" C N R 238 DG "O4'" O N N 239 DG "C3'" C N S 240 DG "O3'" O N N 241 DG "C2'" C N N 242 DG "C1'" C N R 243 DG N9 N Y N 244 DG C8 C Y N 245 DG N7 N Y N 246 DG C5 C Y N 247 DG C6 C N N 248 DG O6 O N N 249 DG N1 N N N 250 DG C2 C N N 251 DG N2 N N N 252 DG N3 N N N 253 DG C4 C Y N 254 DG HOP3 H N N 255 DG HOP2 H N N 256 DG "H5'" H N N 257 DG "H5''" H N N 258 DG "H4'" H N N 259 DG "H3'" H N N 260 DG "HO3'" H N N 261 DG "H2'" H N N 262 DG "H2''" H N N 263 DG "H1'" H N N 264 DG H8 H N N 265 DG H1 H N N 266 DG H21 H N N 267 DG H22 H N N 268 DT OP3 O N N 269 DT P P N N 270 DT OP1 O N N 271 DT OP2 O N N 272 DT "O5'" O N N 273 DT "C5'" C N N 274 DT "C4'" C N R 275 DT "O4'" O N N 276 DT "C3'" C N S 277 DT "O3'" O N N 278 DT "C2'" C N N 279 DT "C1'" C N R 280 DT N1 N N N 281 DT C2 C N N 282 DT O2 O N N 283 DT N3 N N N 284 DT C4 C N N 285 DT O4 O N N 286 DT C5 C N N 287 DT C7 C N N 288 DT C6 C N N 289 DT HOP3 H N N 290 DT HOP2 H N N 291 DT "H5'" H N N 292 DT "H5''" H N N 293 DT "H4'" H N N 294 DT "H3'" H N N 295 DT "HO3'" H N N 296 DT "H2'" H N N 297 DT "H2''" H N N 298 DT "H1'" H N N 299 DT H3 H N N 300 DT H71 H N N 301 DT H72 H N N 302 DT H73 H N N 303 DT H6 H N N 304 GLN N N N N 305 GLN CA C N S 306 GLN C C N N 307 GLN O O N N 308 GLN CB C N N 309 GLN CG C N N 310 GLN CD C N N 311 GLN OE1 O N N 312 GLN NE2 N N N 313 GLN OXT O N N 314 GLN H H N N 315 GLN H2 H N N 316 GLN HA H N N 317 GLN HB2 H N N 318 GLN HB3 H N N 319 GLN HG2 H N N 320 GLN HG3 H N N 321 GLN HE21 H N N 322 GLN HE22 H N N 323 GLN HXT H N N 324 GLU N N N N 325 GLU CA C N S 326 GLU C C N N 327 GLU O O N N 328 GLU CB C N N 329 GLU CG C N N 330 GLU CD C N N 331 GLU OE1 O N N 332 GLU OE2 O N N 333 GLU OXT O N N 334 GLU H H N N 335 GLU H2 H N N 336 GLU HA H N N 337 GLU HB2 H N N 338 GLU HB3 H N N 339 GLU HG2 H N N 340 GLU HG3 H N N 341 GLU HE2 H N N 342 GLU HXT H N N 343 GLY N N N N 344 GLY CA C N N 345 GLY C C N N 346 GLY O O N N 347 GLY OXT O N N 348 GLY H H N N 349 GLY H2 H N N 350 GLY HA2 H N N 351 GLY HA3 H N N 352 GLY HXT H N N 353 HIS N N N N 354 HIS CA C N S 355 HIS C C N N 356 HIS O O N N 357 HIS CB C N N 358 HIS CG C Y N 359 HIS ND1 N Y N 360 HIS CD2 C Y N 361 HIS CE1 C Y N 362 HIS NE2 N Y N 363 HIS OXT O N N 364 HIS H H N N 365 HIS H2 H N N 366 HIS HA H N N 367 HIS HB2 H N N 368 HIS HB3 H N N 369 HIS HD1 H N N 370 HIS HD2 H N N 371 HIS HE1 H N N 372 HIS HE2 H N N 373 HIS HXT H N N 374 HOH O O N N 375 HOH H1 H N N 376 HOH H2 H N N 377 ILE N N N N 378 ILE CA C N S 379 ILE C C N N 380 ILE O O N N 381 ILE CB C N S 382 ILE CG1 C N N 383 ILE CG2 C N N 384 ILE CD1 C N N 385 ILE OXT O N N 386 ILE H H N N 387 ILE H2 H N N 388 ILE HA H N N 389 ILE HB H N N 390 ILE HG12 H N N 391 ILE HG13 H N N 392 ILE HG21 H N N 393 ILE HG22 H N N 394 ILE HG23 H N N 395 ILE HD11 H N N 396 ILE HD12 H N N 397 ILE HD13 H N N 398 ILE HXT H N N 399 LEU N N N N 400 LEU CA C N S 401 LEU C C N N 402 LEU O O N N 403 LEU CB C N N 404 LEU CG C N N 405 LEU CD1 C N N 406 LEU CD2 C N N 407 LEU OXT O N N 408 LEU H H N N 409 LEU H2 H N N 410 LEU HA H N N 411 LEU HB2 H N N 412 LEU HB3 H N N 413 LEU HG H N N 414 LEU HD11 H N N 415 LEU HD12 H N N 416 LEU HD13 H N N 417 LEU HD21 H N N 418 LEU HD22 H N N 419 LEU HD23 H N N 420 LEU HXT H N N 421 LYS N N N N 422 LYS CA C N S 423 LYS C C N N 424 LYS O O N N 425 LYS CB C N N 426 LYS CG C N N 427 LYS CD C N N 428 LYS CE C N N 429 LYS NZ N N N 430 LYS OXT O N N 431 LYS H H N N 432 LYS H2 H N N 433 LYS HA H N N 434 LYS HB2 H N N 435 LYS HB3 H N N 436 LYS HG2 H N N 437 LYS HG3 H N N 438 LYS HD2 H N N 439 LYS HD3 H N N 440 LYS HE2 H N N 441 LYS HE3 H N N 442 LYS HZ1 H N N 443 LYS HZ2 H N N 444 LYS HZ3 H N N 445 LYS HXT H N N 446 MET N N N N 447 MET CA C N S 448 MET C C N N 449 MET O O N N 450 MET CB C N N 451 MET CG C N N 452 MET SD S N N 453 MET CE C N N 454 MET OXT O N N 455 MET H H N N 456 MET H2 H N N 457 MET HA H N N 458 MET HB2 H N N 459 MET HB3 H N N 460 MET HG2 H N N 461 MET HG3 H N N 462 MET HE1 H N N 463 MET HE2 H N N 464 MET HE3 H N N 465 MET HXT H N N 466 PHE N N N N 467 PHE CA C N S 468 PHE C C N N 469 PHE O O N N 470 PHE CB C N N 471 PHE CG C Y N 472 PHE CD1 C Y N 473 PHE CD2 C Y N 474 PHE CE1 C Y N 475 PHE CE2 C Y N 476 PHE CZ C Y N 477 PHE OXT O N N 478 PHE H H N N 479 PHE H2 H N N 480 PHE HA H N N 481 PHE HB2 H N N 482 PHE HB3 H N N 483 PHE HD1 H N N 484 PHE HD2 H N N 485 PHE HE1 H N N 486 PHE HE2 H N N 487 PHE HZ H N N 488 PHE HXT H N N 489 PRO N N N N 490 PRO CA C N S 491 PRO C C N N 492 PRO O O N N 493 PRO CB C N N 494 PRO CG C N N 495 PRO CD C N N 496 PRO OXT O N N 497 PRO H H N N 498 PRO HA H N N 499 PRO HB2 H N N 500 PRO HB3 H N N 501 PRO HG2 H N N 502 PRO HG3 H N N 503 PRO HD2 H N N 504 PRO HD3 H N N 505 PRO HXT H N N 506 SER N N N N 507 SER CA C N S 508 SER C C N N 509 SER O O N N 510 SER CB C N N 511 SER OG O N N 512 SER OXT O N N 513 SER H H N N 514 SER H2 H N N 515 SER HA H N N 516 SER HB2 H N N 517 SER HB3 H N N 518 SER HG H N N 519 SER HXT H N N 520 SO4 S S N N 521 SO4 O1 O N N 522 SO4 O2 O N N 523 SO4 O3 O N N 524 SO4 O4 O N N 525 THR N N N N 526 THR CA C N S 527 THR C C N N 528 THR O O N N 529 THR CB C N R 530 THR OG1 O N N 531 THR CG2 C N N 532 THR OXT O N N 533 THR H H N N 534 THR H2 H N N 535 THR HA H N N 536 THR HB H N N 537 THR HG1 H N N 538 THR HG21 H N N 539 THR HG22 H N N 540 THR HG23 H N N 541 THR HXT H N N 542 TRP N N N N 543 TRP CA C N S 544 TRP C C N N 545 TRP O O N N 546 TRP CB C N N 547 TRP CG C Y N 548 TRP CD1 C Y N 549 TRP CD2 C Y N 550 TRP NE1 N Y N 551 TRP CE2 C Y N 552 TRP CE3 C Y N 553 TRP CZ2 C Y N 554 TRP CZ3 C Y N 555 TRP CH2 C Y N 556 TRP OXT O N N 557 TRP H H N N 558 TRP H2 H N N 559 TRP HA H N N 560 TRP HB2 H N N 561 TRP HB3 H N N 562 TRP HD1 H N N 563 TRP HE1 H N N 564 TRP HE3 H N N 565 TRP HZ2 H N N 566 TRP HZ3 H N N 567 TRP HH2 H N N 568 TRP HXT H N N 569 TYR N N N N 570 TYR CA C N S 571 TYR C C N N 572 TYR O O N N 573 TYR CB C N N 574 TYR CG C Y N 575 TYR CD1 C Y N 576 TYR CD2 C Y N 577 TYR CE1 C Y N 578 TYR CE2 C Y N 579 TYR CZ C Y N 580 TYR OH O N N 581 TYR OXT O N N 582 TYR H H N N 583 TYR H2 H N N 584 TYR HA H N N 585 TYR HB2 H N N 586 TYR HB3 H N N 587 TYR HD1 H N N 588 TYR HD2 H N N 589 TYR HE1 H N N 590 TYR HE2 H N N 591 TYR HH H N N 592 TYR HXT H N N 593 VAL N N N N 594 VAL CA C N S 595 VAL C C N N 596 VAL O O N N 597 VAL CB C N N 598 VAL CG1 C N N 599 VAL CG2 C N N 600 VAL OXT O N N 601 VAL H H N N 602 VAL H2 H N N 603 VAL HA H N N 604 VAL HB H N N 605 VAL HG11 H N N 606 VAL HG12 H N N 607 VAL HG13 H N N 608 VAL HG21 H N N 609 VAL HG22 H N N 610 VAL HG23 H N N 611 VAL HXT H N N 612 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5PY P "O5'" sing N N 1 5PY P OP2 sing N N 2 5PY P OP3 sing N N 3 5PY P OP1 doub N N 4 5PY OP2 HOP2 sing N N 5 5PY "O5'" "C5'" sing N N 6 5PY "C5'" "C4'" sing N N 7 5PY "C5'" "H5'" sing N N 8 5PY "C5'" "H5''" sing N N 9 5PY "C4'" "C3'" sing N N 10 5PY "C4'" "O4'" sing N N 11 5PY "C4'" "H4'" sing N N 12 5PY "O4'" "C1'" sing N N 13 5PY "C1'" N1 sing N N 14 5PY "C1'" "C2'" sing N N 15 5PY "C1'" "H1'" sing N N 16 5PY N1 C2 sing N N 17 5PY N1 C6 sing N N 18 5PY C2 N3 sing N N 19 5PY C2 O2 doub N N 20 5PY N3 C4 doub N N 21 5PY C4 C5 sing N N 22 5PY C4 H4 sing N N 23 5PY C5 C5M sing N N 24 5PY C5 C6 doub N N 25 5PY C5M H71 sing N N 26 5PY C5M H72 sing N N 27 5PY C5M H73 sing N N 28 5PY C6 H6 sing N N 29 5PY "C2'" "C3'" sing N N 30 5PY "C2'" "H2'" sing N N 31 5PY "C2'" "H2''" sing N N 32 5PY "C3'" "O3'" sing N N 33 5PY "C3'" "H3'" sing N N 34 5PY "O3'" "HO3'" sing N N 35 5PY OP3 HOP3 sing N N 36 64T P OP1 doub N N 37 64T P OP2 sing N N 38 64T P "O5'" sing N N 39 64T P OP3 sing N N 40 64T OP2 HOP2 sing N N 41 64T "O5'" "C5'" sing N N 42 64T "C5'" "C4'" sing N N 43 64T "C5'" "H5'" sing N N 44 64T "C5'" "H5''" sing N N 45 64T "C4'" "O4'" sing N N 46 64T "C4'" "C3'" sing N N 47 64T "C4'" "H4'" sing N N 48 64T "O4'" "C1'" sing N N 49 64T "C3'" "O3'" sing N N 50 64T "C3'" "C2'" sing N N 51 64T "C3'" "H3'" sing N N 52 64T "O3'" "HO3'" sing N N 53 64T "C2'" "C1'" sing N N 54 64T "C2'" "H2'" sing N N 55 64T "C2'" "H2''" sing N N 56 64T "C1'" N1 sing N N 57 64T "C1'" "H1'" sing N N 58 64T N1 C2 sing N N 59 64T N1 C6 sing N N 60 64T C2 O2 doub N N 61 64T C2 N3 sing N N 62 64T N3 C4 sing N N 63 64T N3 H3 sing N N 64 64T C4 O4 doub N N 65 64T C4 C5 sing N N 66 64T C5 C5M sing N N 67 64T C5 O5 sing N N 68 64T C5 C6 sing N N 69 64T C5M H71 sing N N 70 64T C5M H72 sing N N 71 64T C5M H73 sing N N 72 64T O5 HO5 sing N N 73 64T C6 H61 sing N N 74 64T C6 H62 sing N N 75 64T OP3 HOP3 sing N N 76 ALA N CA sing N N 77 ALA N H sing N N 78 ALA N H2 sing N N 79 ALA CA C sing N N 80 ALA CA CB sing N N 81 ALA CA HA sing N N 82 ALA C O doub N N 83 ALA C OXT sing N N 84 ALA CB HB1 sing N N 85 ALA CB HB2 sing N N 86 ALA CB HB3 sing N N 87 ALA OXT HXT sing N N 88 ARG N CA sing N N 89 ARG N H sing N N 90 ARG N H2 sing N N 91 ARG CA C sing N N 92 ARG CA CB sing N N 93 ARG CA HA sing N N 94 ARG C O doub N N 95 ARG C OXT sing N N 96 ARG CB CG sing N N 97 ARG CB HB2 sing N N 98 ARG CB HB3 sing N N 99 ARG CG CD sing N N 100 ARG CG HG2 sing N N 101 ARG CG HG3 sing N N 102 ARG CD NE sing N N 103 ARG CD HD2 sing N N 104 ARG CD HD3 sing N N 105 ARG NE CZ sing N N 106 ARG NE HE sing N N 107 ARG CZ NH1 sing N N 108 ARG CZ NH2 doub N N 109 ARG NH1 HH11 sing N N 110 ARG NH1 HH12 sing N N 111 ARG NH2 HH21 sing N N 112 ARG NH2 HH22 sing N N 113 ARG OXT HXT sing N N 114 ASN N CA sing N N 115 ASN N H sing N N 116 ASN N H2 sing N N 117 ASN CA C sing N N 118 ASN CA CB sing N N 119 ASN CA HA sing N N 120 ASN C O doub N N 121 ASN C OXT sing N N 122 ASN CB CG sing N N 123 ASN CB HB2 sing N N 124 ASN CB HB3 sing N N 125 ASN CG OD1 doub N N 126 ASN CG ND2 sing N N 127 ASN ND2 HD21 sing N N 128 ASN ND2 HD22 sing N N 129 ASN OXT HXT sing N N 130 ASP N CA sing N N 131 ASP N H sing N N 132 ASP N H2 sing N N 133 ASP CA C sing N N 134 ASP CA CB sing N N 135 ASP CA HA sing N N 136 ASP C O doub N N 137 ASP C OXT sing N N 138 ASP CB CG sing N N 139 ASP CB HB2 sing N N 140 ASP CB HB3 sing N N 141 ASP CG OD1 doub N N 142 ASP CG OD2 sing N N 143 ASP OD2 HD2 sing N N 144 ASP OXT HXT sing N N 145 CYS N CA sing N N 146 CYS N H sing N N 147 CYS N H2 sing N N 148 CYS CA C sing N N 149 CYS CA CB sing N N 150 CYS CA HA sing N N 151 CYS C O doub N N 152 CYS C OXT sing N N 153 CYS CB SG sing N N 154 CYS CB HB2 sing N N 155 CYS CB HB3 sing N N 156 CYS SG HG sing N N 157 CYS OXT HXT sing N N 158 DA OP3 P sing N N 159 DA OP3 HOP3 sing N N 160 DA P OP1 doub N N 161 DA P OP2 sing N N 162 DA P "O5'" sing N N 163 DA OP2 HOP2 sing N N 164 DA "O5'" "C5'" sing N N 165 DA "C5'" "C4'" sing N N 166 DA "C5'" "H5'" sing N N 167 DA "C5'" "H5''" sing N N 168 DA "C4'" "O4'" sing N N 169 DA "C4'" "C3'" sing N N 170 DA "C4'" "H4'" sing N N 171 DA "O4'" "C1'" sing N N 172 DA "C3'" "O3'" sing N N 173 DA "C3'" "C2'" sing N N 174 DA "C3'" "H3'" sing N N 175 DA "O3'" "HO3'" sing N N 176 DA "C2'" "C1'" sing N N 177 DA "C2'" "H2'" sing N N 178 DA "C2'" "H2''" sing N N 179 DA "C1'" N9 sing N N 180 DA "C1'" "H1'" sing N N 181 DA N9 C8 sing Y N 182 DA N9 C4 sing Y N 183 DA C8 N7 doub Y N 184 DA C8 H8 sing N N 185 DA N7 C5 sing Y N 186 DA C5 C6 sing Y N 187 DA C5 C4 doub Y N 188 DA C6 N6 sing N N 189 DA C6 N1 doub Y N 190 DA N6 H61 sing N N 191 DA N6 H62 sing N N 192 DA N1 C2 sing Y N 193 DA C2 N3 doub Y N 194 DA C2 H2 sing N N 195 DA N3 C4 sing Y N 196 DC OP3 P sing N N 197 DC OP3 HOP3 sing N N 198 DC P OP1 doub N N 199 DC P OP2 sing N N 200 DC P "O5'" sing N N 201 DC OP2 HOP2 sing N N 202 DC "O5'" "C5'" sing N N 203 DC "C5'" "C4'" sing N N 204 DC "C5'" "H5'" sing N N 205 DC "C5'" "H5''" sing N N 206 DC "C4'" "O4'" sing N N 207 DC "C4'" "C3'" sing N N 208 DC "C4'" "H4'" sing N N 209 DC "O4'" "C1'" sing N N 210 DC "C3'" "O3'" sing N N 211 DC "C3'" "C2'" sing N N 212 DC "C3'" "H3'" sing N N 213 DC "O3'" "HO3'" sing N N 214 DC "C2'" "C1'" sing N N 215 DC "C2'" "H2'" sing N N 216 DC "C2'" "H2''" sing N N 217 DC "C1'" N1 sing N N 218 DC "C1'" "H1'" sing N N 219 DC N1 C2 sing N N 220 DC N1 C6 sing N N 221 DC C2 O2 doub N N 222 DC C2 N3 sing N N 223 DC N3 C4 doub N N 224 DC C4 N4 sing N N 225 DC C4 C5 sing N N 226 DC N4 H41 sing N N 227 DC N4 H42 sing N N 228 DC C5 C6 doub N N 229 DC C5 H5 sing N N 230 DC C6 H6 sing N N 231 DG OP3 P sing N N 232 DG OP3 HOP3 sing N N 233 DG P OP1 doub N N 234 DG P OP2 sing N N 235 DG P "O5'" sing N N 236 DG OP2 HOP2 sing N N 237 DG "O5'" "C5'" sing N N 238 DG "C5'" "C4'" sing N N 239 DG "C5'" "H5'" sing N N 240 DG "C5'" "H5''" sing N N 241 DG "C4'" "O4'" sing N N 242 DG "C4'" "C3'" sing N N 243 DG "C4'" "H4'" sing N N 244 DG "O4'" "C1'" sing N N 245 DG "C3'" "O3'" sing N N 246 DG "C3'" "C2'" sing N N 247 DG "C3'" "H3'" sing N N 248 DG "O3'" "HO3'" sing N N 249 DG "C2'" "C1'" sing N N 250 DG "C2'" "H2'" sing N N 251 DG "C2'" "H2''" sing N N 252 DG "C1'" N9 sing N N 253 DG "C1'" "H1'" sing N N 254 DG N9 C8 sing Y N 255 DG N9 C4 sing Y N 256 DG C8 N7 doub Y N 257 DG C8 H8 sing N N 258 DG N7 C5 sing Y N 259 DG C5 C6 sing N N 260 DG C5 C4 doub Y N 261 DG C6 O6 doub N N 262 DG C6 N1 sing N N 263 DG N1 C2 sing N N 264 DG N1 H1 sing N N 265 DG C2 N2 sing N N 266 DG C2 N3 doub N N 267 DG N2 H21 sing N N 268 DG N2 H22 sing N N 269 DG N3 C4 sing N N 270 DT OP3 P sing N N 271 DT OP3 HOP3 sing N N 272 DT P OP1 doub N N 273 DT P OP2 sing N N 274 DT P "O5'" sing N N 275 DT OP2 HOP2 sing N N 276 DT "O5'" "C5'" sing N N 277 DT "C5'" "C4'" sing N N 278 DT "C5'" "H5'" sing N N 279 DT "C5'" "H5''" sing N N 280 DT "C4'" "O4'" sing N N 281 DT "C4'" "C3'" sing N N 282 DT "C4'" "H4'" sing N N 283 DT "O4'" "C1'" sing N N 284 DT "C3'" "O3'" sing N N 285 DT "C3'" "C2'" sing N N 286 DT "C3'" "H3'" sing N N 287 DT "O3'" "HO3'" sing N N 288 DT "C2'" "C1'" sing N N 289 DT "C2'" "H2'" sing N N 290 DT "C2'" "H2''" sing N N 291 DT "C1'" N1 sing N N 292 DT "C1'" "H1'" sing N N 293 DT N1 C2 sing N N 294 DT N1 C6 sing N N 295 DT C2 O2 doub N N 296 DT C2 N3 sing N N 297 DT N3 C4 sing N N 298 DT N3 H3 sing N N 299 DT C4 O4 doub N N 300 DT C4 C5 sing N N 301 DT C5 C7 sing N N 302 DT C5 C6 doub N N 303 DT C7 H71 sing N N 304 DT C7 H72 sing N N 305 DT C7 H73 sing N N 306 DT C6 H6 sing N N 307 GLN N CA sing N N 308 GLN N H sing N N 309 GLN N H2 sing N N 310 GLN CA C sing N N 311 GLN CA CB sing N N 312 GLN CA HA sing N N 313 GLN C O doub N N 314 GLN C OXT sing N N 315 GLN CB CG sing N N 316 GLN CB HB2 sing N N 317 GLN CB HB3 sing N N 318 GLN CG CD sing N N 319 GLN CG HG2 sing N N 320 GLN CG HG3 sing N N 321 GLN CD OE1 doub N N 322 GLN CD NE2 sing N N 323 GLN NE2 HE21 sing N N 324 GLN NE2 HE22 sing N N 325 GLN OXT HXT sing N N 326 GLU N CA sing N N 327 GLU N H sing N N 328 GLU N H2 sing N N 329 GLU CA C sing N N 330 GLU CA CB sing N N 331 GLU CA HA sing N N 332 GLU C O doub N N 333 GLU C OXT sing N N 334 GLU CB CG sing N N 335 GLU CB HB2 sing N N 336 GLU CB HB3 sing N N 337 GLU CG CD sing N N 338 GLU CG HG2 sing N N 339 GLU CG HG3 sing N N 340 GLU CD OE1 doub N N 341 GLU CD OE2 sing N N 342 GLU OE2 HE2 sing N N 343 GLU OXT HXT sing N N 344 GLY N CA sing N N 345 GLY N H sing N N 346 GLY N H2 sing N N 347 GLY CA C sing N N 348 GLY CA HA2 sing N N 349 GLY CA HA3 sing N N 350 GLY C O doub N N 351 GLY C OXT sing N N 352 GLY OXT HXT sing N N 353 HIS N CA sing N N 354 HIS N H sing N N 355 HIS N H2 sing N N 356 HIS CA C sing N N 357 HIS CA CB sing N N 358 HIS CA HA sing N N 359 HIS C O doub N N 360 HIS C OXT sing N N 361 HIS CB CG sing N N 362 HIS CB HB2 sing N N 363 HIS CB HB3 sing N N 364 HIS CG ND1 sing Y N 365 HIS CG CD2 doub Y N 366 HIS ND1 CE1 doub Y N 367 HIS ND1 HD1 sing N N 368 HIS CD2 NE2 sing Y N 369 HIS CD2 HD2 sing N N 370 HIS CE1 NE2 sing Y N 371 HIS CE1 HE1 sing N N 372 HIS NE2 HE2 sing N N 373 HIS OXT HXT sing N N 374 HOH O H1 sing N N 375 HOH O H2 sing N N 376 ILE N CA sing N N 377 ILE N H sing N N 378 ILE N H2 sing N N 379 ILE CA C sing N N 380 ILE CA CB sing N N 381 ILE CA HA sing N N 382 ILE C O doub N N 383 ILE C OXT sing N N 384 ILE CB CG1 sing N N 385 ILE CB CG2 sing N N 386 ILE CB HB sing N N 387 ILE CG1 CD1 sing N N 388 ILE CG1 HG12 sing N N 389 ILE CG1 HG13 sing N N 390 ILE CG2 HG21 sing N N 391 ILE CG2 HG22 sing N N 392 ILE CG2 HG23 sing N N 393 ILE CD1 HD11 sing N N 394 ILE CD1 HD12 sing N N 395 ILE CD1 HD13 sing N N 396 ILE OXT HXT sing N N 397 LEU N CA sing N N 398 LEU N H sing N N 399 LEU N H2 sing N N 400 LEU CA C sing N N 401 LEU CA CB sing N N 402 LEU CA HA sing N N 403 LEU C O doub N N 404 LEU C OXT sing N N 405 LEU CB CG sing N N 406 LEU CB HB2 sing N N 407 LEU CB HB3 sing N N 408 LEU CG CD1 sing N N 409 LEU CG CD2 sing N N 410 LEU CG HG sing N N 411 LEU CD1 HD11 sing N N 412 LEU CD1 HD12 sing N N 413 LEU CD1 HD13 sing N N 414 LEU CD2 HD21 sing N N 415 LEU CD2 HD22 sing N N 416 LEU CD2 HD23 sing N N 417 LEU OXT HXT sing N N 418 LYS N CA sing N N 419 LYS N H sing N N 420 LYS N H2 sing N N 421 LYS CA C sing N N 422 LYS CA CB sing N N 423 LYS CA HA sing N N 424 LYS C O doub N N 425 LYS C OXT sing N N 426 LYS CB CG sing N N 427 LYS CB HB2 sing N N 428 LYS CB HB3 sing N N 429 LYS CG CD sing N N 430 LYS CG HG2 sing N N 431 LYS CG HG3 sing N N 432 LYS CD CE sing N N 433 LYS CD HD2 sing N N 434 LYS CD HD3 sing N N 435 LYS CE NZ sing N N 436 LYS CE HE2 sing N N 437 LYS CE HE3 sing N N 438 LYS NZ HZ1 sing N N 439 LYS NZ HZ2 sing N N 440 LYS NZ HZ3 sing N N 441 LYS OXT HXT sing N N 442 MET N CA sing N N 443 MET N H sing N N 444 MET N H2 sing N N 445 MET CA C sing N N 446 MET CA CB sing N N 447 MET CA HA sing N N 448 MET C O doub N N 449 MET C OXT sing N N 450 MET CB CG sing N N 451 MET CB HB2 sing N N 452 MET CB HB3 sing N N 453 MET CG SD sing N N 454 MET CG HG2 sing N N 455 MET CG HG3 sing N N 456 MET SD CE sing N N 457 MET CE HE1 sing N N 458 MET CE HE2 sing N N 459 MET CE HE3 sing N N 460 MET OXT HXT sing N N 461 PHE N CA sing N N 462 PHE N H sing N N 463 PHE N H2 sing N N 464 PHE CA C sing N N 465 PHE CA CB sing N N 466 PHE CA HA sing N N 467 PHE C O doub N N 468 PHE C OXT sing N N 469 PHE CB CG sing N N 470 PHE CB HB2 sing N N 471 PHE CB HB3 sing N N 472 PHE CG CD1 doub Y N 473 PHE CG CD2 sing Y N 474 PHE CD1 CE1 sing Y N 475 PHE CD1 HD1 sing N N 476 PHE CD2 CE2 doub Y N 477 PHE CD2 HD2 sing N N 478 PHE CE1 CZ doub Y N 479 PHE CE1 HE1 sing N N 480 PHE CE2 CZ sing Y N 481 PHE CE2 HE2 sing N N 482 PHE CZ HZ sing N N 483 PHE OXT HXT sing N N 484 PRO N CA sing N N 485 PRO N CD sing N N 486 PRO N H sing N N 487 PRO CA C sing N N 488 PRO CA CB sing N N 489 PRO CA HA sing N N 490 PRO C O doub N N 491 PRO C OXT sing N N 492 PRO CB CG sing N N 493 PRO CB HB2 sing N N 494 PRO CB HB3 sing N N 495 PRO CG CD sing N N 496 PRO CG HG2 sing N N 497 PRO CG HG3 sing N N 498 PRO CD HD2 sing N N 499 PRO CD HD3 sing N N 500 PRO OXT HXT sing N N 501 SER N CA sing N N 502 SER N H sing N N 503 SER N H2 sing N N 504 SER CA C sing N N 505 SER CA CB sing N N 506 SER CA HA sing N N 507 SER C O doub N N 508 SER C OXT sing N N 509 SER CB OG sing N N 510 SER CB HB2 sing N N 511 SER CB HB3 sing N N 512 SER OG HG sing N N 513 SER OXT HXT sing N N 514 SO4 S O1 doub N N 515 SO4 S O2 doub N N 516 SO4 S O3 sing N N 517 SO4 S O4 sing N N 518 THR N CA sing N N 519 THR N H sing N N 520 THR N H2 sing N N 521 THR CA C sing N N 522 THR CA CB sing N N 523 THR CA HA sing N N 524 THR C O doub N N 525 THR C OXT sing N N 526 THR CB OG1 sing N N 527 THR CB CG2 sing N N 528 THR CB HB sing N N 529 THR OG1 HG1 sing N N 530 THR CG2 HG21 sing N N 531 THR CG2 HG22 sing N N 532 THR CG2 HG23 sing N N 533 THR OXT HXT sing N N 534 TRP N CA sing N N 535 TRP N H sing N N 536 TRP N H2 sing N N 537 TRP CA C sing N N 538 TRP CA CB sing N N 539 TRP CA HA sing N N 540 TRP C O doub N N 541 TRP C OXT sing N N 542 TRP CB CG sing N N 543 TRP CB HB2 sing N N 544 TRP CB HB3 sing N N 545 TRP CG CD1 doub Y N 546 TRP CG CD2 sing Y N 547 TRP CD1 NE1 sing Y N 548 TRP CD1 HD1 sing N N 549 TRP CD2 CE2 doub Y N 550 TRP CD2 CE3 sing Y N 551 TRP NE1 CE2 sing Y N 552 TRP NE1 HE1 sing N N 553 TRP CE2 CZ2 sing Y N 554 TRP CE3 CZ3 doub Y N 555 TRP CE3 HE3 sing N N 556 TRP CZ2 CH2 doub Y N 557 TRP CZ2 HZ2 sing N N 558 TRP CZ3 CH2 sing Y N 559 TRP CZ3 HZ3 sing N N 560 TRP CH2 HH2 sing N N 561 TRP OXT HXT sing N N 562 TYR N CA sing N N 563 TYR N H sing N N 564 TYR N H2 sing N N 565 TYR CA C sing N N 566 TYR CA CB sing N N 567 TYR CA HA sing N N 568 TYR C O doub N N 569 TYR C OXT sing N N 570 TYR CB CG sing N N 571 TYR CB HB2 sing N N 572 TYR CB HB3 sing N N 573 TYR CG CD1 doub Y N 574 TYR CG CD2 sing Y N 575 TYR CD1 CE1 sing Y N 576 TYR CD1 HD1 sing N N 577 TYR CD2 CE2 doub Y N 578 TYR CD2 HD2 sing N N 579 TYR CE1 CZ doub Y N 580 TYR CE1 HE1 sing N N 581 TYR CE2 CZ sing Y N 582 TYR CE2 HE2 sing N N 583 TYR CZ OH sing N N 584 TYR OH HH sing N N 585 TYR OXT HXT sing N N 586 VAL N CA sing N N 587 VAL N H sing N N 588 VAL N H2 sing N N 589 VAL CA C sing N N 590 VAL CA CB sing N N 591 VAL CA HA sing N N 592 VAL C O doub N N 593 VAL C OXT sing N N 594 VAL CB CG1 sing N N 595 VAL CB CG2 sing N N 596 VAL CB HB sing N N 597 VAL CG1 HG11 sing N N 598 VAL CG1 HG12 sing N N 599 VAL CG1 HG13 sing N N 600 VAL CG2 HG21 sing N N 601 VAL CG2 HG22 sing N N 602 VAL CG2 HG23 sing N N 603 VAL OXT HXT sing N N 604 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4GLE 'double helix' 4GLE 'b-form double helix' 4GLE 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 15 1_555 0.053 -0.020 0.678 -16.271 -16.404 3.780 1 B_DC1:DG15_C B 1 ? C 15 ? 19 1 1 A DG 2 1_555 B DC 14 1_555 0.116 -0.019 -0.132 -2.014 -6.194 -2.806 2 B_DG2:DC14_C B 2 ? C 14 ? 19 1 1 A DT 3 1_555 B DA 13 1_555 -0.154 -0.177 -0.133 -4.660 -16.337 -6.483 3 B_DT3:DA13_C B 3 ? C 13 ? 20 1 1 A DC 4 1_555 B DG 12 1_555 0.209 -0.153 0.035 -1.097 1.373 -0.867 4 B_DC4:DG12_C B 4 ? C 12 ? 19 1 1 A DG 5 1_555 B DC 11 1_555 -0.113 -0.185 0.265 0.087 -22.006 -3.029 5 B_DG5:DC11_C B 5 ? C 11 ? 19 1 1 A DT 6 1_555 B DA 10 1_555 0.695 -0.058 0.092 2.640 -6.078 0.013 6 B_DT6:DA10_C B 6 ? C 10 ? 20 1 1 A DC 7 1_555 B DG 9 1_555 -0.003 -0.166 -0.129 3.075 -15.060 -0.006 7 B_DC7:DG9_C B 7 ? C 9 ? 19 1 1 A DG 10 1_555 B DC 6 1_555 -0.864 0.053 -0.245 -17.943 -0.882 6.120 8 B_DG10:DC6_C B 10 ? C 6 ? 19 1 1 A DG 11 1_555 B DC 5 1_555 0.427 0.261 -0.454 -8.935 -11.083 -2.732 9 B_DG11:DC5_C B 11 ? C 5 ? 19 1 1 A DA 12 1_555 B DT 4 1_555 0.174 -0.035 -0.127 1.106 -10.682 4.791 10 B_DA12:DT4_C B 12 ? C 4 ? 20 1 1 A DC 13 1_555 B DG 3 1_555 0.427 -0.180 0.269 3.191 -11.608 -0.127 11 B_DC13:DG3_C B 13 ? C 3 ? 19 1 1 A DG 14 1_555 B DC 2 1_555 -0.232 -0.150 0.236 6.838 -2.563 -12.907 12 B_DG14:DC2_C B 14 ? C 2 ? 19 1 1 A DC 15 1_555 B DG 1 1_555 0.278 -0.187 0.127 -0.521 1.459 4.389 13 B_DC15:DG1_C B 15 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 15 1_555 A DG 2 1_555 B DC 14 1_555 -0.545 -0.210 2.989 4.227 8.630 33.042 -1.565 1.515 2.760 14.788 -7.243 34.373 1 BB_DC1DG2:DC14DG15_CC B 1 ? C 15 ? B 2 ? C 14 ? 1 A DG 2 1_555 B DC 14 1_555 A DT 3 1_555 B DA 13 1_555 -0.725 -0.488 3.295 -0.062 2.774 30.344 -1.483 1.367 3.240 5.286 0.117 30.467 2 BB_DG2DT3:DA13DC14_CC B 2 ? C 14 ? B 3 ? C 13 ? 1 A DT 3 1_555 B DA 13 1_555 A DC 4 1_555 B DG 12 1_555 1.431 0.775 3.406 1.804 2.947 37.805 0.793 -1.957 3.517 4.536 -2.778 37.957 3 BB_DT3DC4:DG12DA13_CC B 3 ? C 13 ? B 4 ? C 12 ? 1 A DC 4 1_555 B DG 12 1_555 A DG 5 1_555 B DC 11 1_555 -1.552 1.201 3.311 -3.306 1.916 33.105 1.762 2.132 3.507 3.349 5.778 33.318 4 BB_DC4DG5:DC11DG12_CC B 4 ? C 12 ? B 5 ? C 11 ? 1 A DG 5 1_555 B DC 11 1_555 A DT 6 1_555 B DA 10 1_555 1.206 -0.092 3.282 2.209 -7.078 43.983 0.539 -1.385 3.311 -9.371 -2.925 44.573 5 BB_DG5DT6:DA10DC11_CC B 5 ? C 11 ? B 6 ? C 10 ? 1 A DT 6 1_555 B DA 10 1_555 A DC 7 1_555 B DG 9 1_555 -0.286 -0.110 3.196 3.226 5.873 27.728 -1.522 1.295 3.056 12.034 -6.609 28.511 6 BB_DT6DC7:DG9DA10_CC B 6 ? C 10 ? B 7 ? C 9 ? 1 A DG 10 1_555 B DC 6 1_555 A DG 11 1_555 B DC 5 1_555 -0.358 0.266 3.201 -2.577 13.003 32.951 -1.475 0.209 3.102 21.854 4.332 35.449 7 BB_DG10DG11:DC5DC6_CC B 10 ? C 6 ? B 11 ? C 5 ? 1 A DG 11 1_555 B DC 5 1_555 A DA 12 1_555 B DT 4 1_555 -0.016 0.444 3.051 -3.228 2.393 30.347 0.397 -0.568 3.061 4.547 6.132 30.606 8 BB_DG11DA12:DT4DC5_CC B 11 ? C 5 ? B 12 ? C 4 ? 1 A DA 12 1_555 B DT 4 1_555 A DC 13 1_555 B DG 3 1_555 0.074 -0.631 3.271 -1.176 -0.161 33.480 -1.069 -0.322 3.269 -0.279 2.040 33.500 9 BB_DA12DC13:DG3DT4_CC B 12 ? C 4 ? B 13 ? C 3 ? 1 A DC 13 1_555 B DG 3 1_555 A DG 14 1_555 B DC 2 1_555 -0.181 -0.054 3.136 1.402 7.829 33.506 -1.259 0.515 3.037 13.347 -2.391 34.411 10 BB_DC13DG14:DC2DG3_CC B 13 ? C 3 ? B 14 ? C 2 ? 1 A DG 14 1_555 B DC 2 1_555 A DC 15 1_555 B DG 1 1_555 1.135 -0.575 3.423 0.821 -1.044 36.885 -0.760 -1.676 3.461 -1.650 -1.298 36.908 11 BB_DG14DC15:DG1DC2_CC B 14 ? C 2 ? B 15 ? C 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3TC3 _pdbx_initial_refinement_model.details 'PDB ENTRY 3TC3' # _atom_sites.entry_id 4GLE _atom_sites.fract_transf_matrix[1][1] 0.017483 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008888 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006500 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_