HEADER HYDROLASE/DNA 14-AUG-12 4GLE TITLE SACUVDE IN COMPLEX WITH 6-4PP-CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*TP*CP*GP*TP*CP*AP*AP*GP*GP*AP*CP*GP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*CP*GP*TP*CP*CP*(64T)P*(5PY)P*GP*AP*CP*GP*AP*CP*G)- COMPND 7 3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: UV DAMAGE ENDONUCLEASE; COMPND 12 CHAIN: A; COMPND 13 EC: 3.-.-.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 7 ORGANISM_TAXID: 2285; SOURCE 8 GENE: UVDE, SACI_1096; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.MEULENBROEK,C.PERON CANE,I.JALA,S.IWAI,G.F.MOOLENAAR,N.GOOSEN, AUTHOR 2 N.S.PANNU REVDAT 5 06-NOV-24 4GLE 1 REMARK REVDAT 4 13-SEP-23 4GLE 1 REMARK SEQADV LINK REVDAT 3 06-FEB-13 4GLE 1 JRNL REVDAT 2 26-DEC-12 4GLE 1 JRNL REVDAT 1 21-NOV-12 4GLE 0 JRNL AUTH E.M.MEULENBROEK,C.PERON CANE,I.JALA,S.IWAI,G.F.MOOLENAAR, JRNL AUTH 2 N.GOOSEN,N.S.PANNU JRNL TITL UV DAMAGE ENDONUCLEASE EMPLOYS A NOVEL DUAL-DINUCLEOTIDE JRNL TITL 2 FLIPPING MECHANISM TO RECOGNIZE DIFFERENT DNA LESIONS. JRNL REF NUCLEIC ACIDS RES. V. 41 1363 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23221644 JRNL DOI 10.1093/NAR/GKS1127 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0024 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 698 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 945 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2353 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.20000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : 4.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.763 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3086 ; 0.011 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 2694 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4287 ; 1.569 ; 1.794 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6231 ; 1.271 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 7.189 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;39.244 ;24.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;16.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3014 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 687 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4GLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND(001) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 52.834 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.83200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3TC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2000 MME, 100 MM ACETATE REMARK 280 BUFFER, PH 4.6, 200 MM AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.25500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.25500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.92500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.60000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.25500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.92500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.60000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.25500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 ASP A 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 C5' - C4' - O4' ANGL. DEV. = 11.8 DEGREES REMARK 500 DA C 10 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A -1 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 PRO A 101 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A -1 -123.39 -65.83 REMARK 500 HIS A 0 -12.96 109.69 REMARK 500 SER A 7 -53.29 81.02 REMARK 500 SER A 11 33.24 -68.72 REMARK 500 LEU A 12 -6.62 -147.90 REMARK 500 CYS A 14 64.73 -159.68 REMARK 500 PRO A 101 -4.33 -56.62 REMARK 500 ASN A 108 37.10 -98.28 REMARK 500 GLU A 135 -86.09 -86.65 REMARK 500 VAL A 179 -70.18 -107.80 REMARK 500 ASP A 225 -150.87 -100.21 REMARK 500 LYS A 271 -105.92 44.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TC3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SACUVDE DBREF 4GLE A 1 289 UNP Q4J9T1 Q4J9T1_SULAC 1 289 DBREF 4GLE B 1 15 PDB 4GLE 4GLE 1 15 DBREF 4GLE C 1 15 PDB 4GLE 4GLE 1 15 SEQADV 4GLE MET A -20 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE GLY A -19 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -18 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -17 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -16 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -15 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -14 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -13 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -12 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -11 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -10 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -9 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE SER A -8 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE SER A -7 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE GLY A -6 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A -5 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE ILE A -4 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE GLU A -3 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE GLY A -2 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE ARG A -1 UNP Q4J9T1 EXPRESSION TAG SEQADV 4GLE HIS A 0 UNP Q4J9T1 EXPRESSION TAG SEQRES 1 B 15 DC DG DT DC DG DT DC DA DA DG DG DA DC SEQRES 2 B 15 DG DC SEQRES 1 C 15 DG DC DG DT DC DC 64T 5PY DG DA DC DG DA SEQRES 2 C 15 DC DG SEQRES 1 A 310 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 310 SER GLY HIS ILE GLU GLY ARG HIS MET ARG VAL GLY TYR SEQRES 3 A 310 VAL SER THR ASN TYR SER LEU GLY CYS LYS ALA ASP LYS SEQRES 4 A 310 THR ILE LYS LEU SER SER LEU SER GLU GLU ARG VAL LEU SEQRES 5 A 310 LYS VAL SER SER SER ASN LEU LEU CYS LEU LYS ASN ILE SEQRES 6 A 310 LEU GLU TRP ASN LEU LYS HIS GLU ILE LEU PHE PHE ARG SEQRES 7 A 310 ILE SER SER ASN THR ILE PRO LEU ALA SER HIS PRO LYS SEQRES 8 A 310 PHE HIS VAL ASN TRP LYS ASP LYS LEU SER HIS ILE LEU SEQRES 9 A 310 GLY ASP ILE GLY ASP PHE ILE LYS GLU ASN SER ILE ARG SEQRES 10 A 310 ILE SER MET HIS PRO GLY GLN TYR VAL VAL LEU ASN SER SEQRES 11 A 310 VAL ARG GLU GLU VAL VAL ARG SER SER ILE MET GLU LEU SEQRES 12 A 310 LYS TYR HIS ALA ASP LEU LEU ASP SER MET GLY ILE GLU SEQRES 13 A 310 GLY LYS ILE GLN ILE HIS VAL GLY SER SER MET ASN GLY SEQRES 14 A 310 LYS GLU GLU SER LEU ASN ARG PHE ILE GLU ASN PHE ARG SEQRES 15 A 310 LYS LEU PRO SER ASN ILE SER LYS ARG LEU VAL ILE GLU SEQRES 16 A 310 ASN ASP ASP LYS VAL PHE SER VAL LYS ASP CYS LEU TRP SEQRES 17 A 310 ILE SER GLU ARG THR GLY ILE PRO VAL ILE PHE ASP ASN SEQRES 18 A 310 LEU HIS HIS SER ILE LEU ASN ASN GLY GLU SER LEU ASN SEQRES 19 A 310 ASP ALA LEU SER LEU VAL ARG ARG THR TRP LYS ASP ARG SEQRES 20 A 310 PRO MET ILE ASP TYR SER GLU GLN GLU PRO GLY GLU LYS SEQRES 21 A 310 PRO GLY VAL HIS ALA THR THR ILE ASN GLU GLU ASN PHE SEQRES 22 A 310 ARG ARG PHE VAL ASN GLU VAL ASP GLU VAL ASP ILE MET SEQRES 23 A 310 LEU GLU VAL LYS ASP LYS GLU ILE SER ALA LEU LYS ALA SEQRES 24 A 310 VAL LYS VAL LEU LYS GLU LEU ASN LYS LEU ASP MODRES 4GLE 64T C 7 DT 5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE MODRES 4GLE 5PY C 8 DT HET 64T C 7 21 HET 5PY C 8 19 HET SO4 A 301 5 HET SO4 A 302 5 HETNAM 64T 5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE HETNAM 5PY 1-(2'-DEOXY-5'-O-PHOSPHONO-BETA-D-ERYTHRO- HETNAM 2 5PY PENTOFURANOSYL)-5-METHYLPYRIMIDIN-2(1H)-ONE HETNAM SO4 SULFATE ION FORMUL 2 64T C10 H17 N2 O9 P FORMUL 2 5PY C10 H15 N2 O7 P FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *4(H2 O) HELIX 1 1 ASN A 9 GLY A 13 5 5 HELIX 2 2 LYS A 21 LEU A 25 5 5 HELIX 3 3 SER A 26 HIS A 51 1 26 HELIX 4 4 ASN A 74 LEU A 79 1 6 HELIX 5 5 LEU A 79 ASN A 93 1 15 HELIX 6 6 ARG A 111 MET A 132 1 22 HELIX 7 7 GLY A 148 ARG A 161 1 14 HELIX 8 8 PRO A 164 LYS A 169 1 6 HELIX 9 9 SER A 181 GLY A 193 1 13 HELIX 10 10 ASN A 200 LEU A 206 1 7 HELIX 11 11 SER A 211 ARG A 221 1 11 HELIX 12 12 ASN A 248 ASN A 257 1 10 HELIX 13 13 LYS A 271 LEU A 285 1 15 SHEET 1 A 9 MET A 1 VAL A 6 0 SHEET 2 A 9 PHE A 55 ILE A 58 1 O ARG A 57 N TYR A 5 SHEET 3 A 9 ARG A 96 MET A 99 1 O SER A 98 N ILE A 58 SHEET 4 A 9 LYS A 137 HIS A 141 1 O GLN A 139 N MET A 99 SHEET 5 A 9 LEU A 171 GLU A 174 1 O GLU A 174 N ILE A 140 SHEET 6 A 9 VAL A 196 ASP A 199 1 O ILE A 197 N ILE A 173 SHEET 7 A 9 MET A 228 TYR A 231 1 O ASP A 230 N PHE A 198 SHEET 8 A 9 VAL A 262 LEU A 266 1 O MET A 265 N ILE A 229 SHEET 9 A 9 MET A 1 VAL A 6 1 N ARG A 2 O ILE A 264 SSBOND 1 CYS A 14 CYS A 40 1555 1555 2.05 LINK O3' DC C 6 P 64T C 7 1555 1555 1.62 LINK O3' 64T C 7 P 5PY C 8 1555 1555 1.62 LINK C6 64T C 7 C4 5PY C 8 1555 1555 1.51 LINK O3' 5PY C 8 P DG C 9 1555 1555 1.60 SITE 1 AC1 3 LYS A 76 SER A 94 LYS A 123 SITE 1 AC2 5 ARG A 96 GLY A 136 LYS A 137 ASP A 225 SITE 2 AC2 5 HOH A 401 CRYST1 57.200 112.510 153.850 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006500 0.00000