HEADER TRANSFERASE 14-AUG-12 4GLF TITLE CRYSTAL STRUCTURE OF METHYLTHIOADENOSINE PHOSPHORYLASE SOURCED FROM AN TITLE 2 ANTARCTIC SOIL METAGENOMIC LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RSFP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 GENE: RSFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LMG194; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD-MYC-HISA KEYWDS METHYLTHIOADENOSINE PHOSPHORYLASE, METHYLTHIOADENOSINE, RHODAMINE B, KEYWDS 2 METAGENOMIC LIBRARY ANTARCTIC SOIL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BUJACZ,G.BUJACZ,H.CIESLINSKI,P.BARTASUN REVDAT 2 13-SEP-23 4GLF 1 REMARK REVDAT 1 20-FEB-13 4GLF 0 JRNL AUTH P.BARTASUN,H.CIESLINSKI,A.BUJACZ,A.WIERZBICKA-WOS,J.KUR JRNL TITL A STUDY ON THE INTERACTION OF RHODAMINE B WITH JRNL TITL 2 METHYLTHIOADENOSINE PHOSPHORYLASE PROTEIN SOURCED FROM AN JRNL TITL 3 ANTARCTIC SOIL METAGENOMIC LIBRARY. JRNL REF PLOS ONE V. 8 55697 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23383268 JRNL DOI 10.1371/JOURNAL.PONE.0055697 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 19185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -3.01000 REMARK 3 B12 (A**2) : 1.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.256 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2279 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3115 ; 1.894 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 6.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;34.643 ;25.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;16.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.539 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1731 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9047 51.9549 64.3191 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.1251 REMARK 3 T33: 0.2696 T12: 0.0322 REMARK 3 T13: 0.0662 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.6576 L22: 4.6087 REMARK 3 L33: 4.0861 L12: -2.3210 REMARK 3 L13: 1.3745 L23: 1.7103 REMARK 3 S TENSOR REMARK 3 S11: -0.2393 S12: -0.1349 S13: 0.4010 REMARK 3 S21: 0.0116 S22: 0.0601 S23: -0.2686 REMARK 3 S31: -0.4734 S32: -0.1164 S33: 0.1792 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9692 44.3677 66.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.3299 T22: 0.0822 REMARK 3 T33: 0.1195 T12: 0.0168 REMARK 3 T13: 0.0246 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 2.5926 L22: 2.0647 REMARK 3 L33: 0.3999 L12: -1.5821 REMARK 3 L13: -0.5476 L23: 0.7332 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.2946 S13: 0.3596 REMARK 3 S21: 0.2378 S22: 0.0817 S23: -0.1235 REMARK 3 S31: -0.1119 S32: 0.0074 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1339 41.0984 54.3658 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.0316 REMARK 3 T33: 0.0616 T12: 0.0172 REMARK 3 T13: -0.0420 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6948 L22: 1.5637 REMARK 3 L33: 2.3218 L12: -0.4879 REMARK 3 L13: -0.1999 L23: -0.4301 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.0274 S13: 0.1209 REMARK 3 S21: 0.0152 S22: -0.0430 S23: -0.0187 REMARK 3 S31: -0.2450 S32: -0.0507 S33: 0.0681 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6761 31.7392 47.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.0452 REMARK 3 T33: 0.0094 T12: 0.0267 REMARK 3 T13: -0.0159 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 12.8302 L22: 8.4966 REMARK 3 L33: 3.2780 L12: -8.8751 REMARK 3 L13: 4.5791 L23: -5.1358 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: 0.4026 S13: -0.0556 REMARK 3 S21: 0.0783 S22: -0.1022 S23: -0.0155 REMARK 3 S31: -0.0800 S32: 0.0033 S33: 0.0321 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3764 24.5855 61.2605 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0428 REMARK 3 T33: 0.0550 T12: 0.0098 REMARK 3 T13: 0.0196 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.9319 L22: 2.9672 REMARK 3 L33: 1.7823 L12: 1.2168 REMARK 3 L13: -0.6043 L23: -0.5316 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: -0.1852 S13: -0.0766 REMARK 3 S21: 0.0247 S22: -0.0437 S23: 0.0355 REMARK 3 S31: 0.1445 S32: -0.0003 S33: 0.1351 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6802 45.3884 45.4913 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.1063 REMARK 3 T33: 0.0709 T12: 0.0597 REMARK 3 T13: -0.0337 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.7202 L22: 9.5305 REMARK 3 L33: 2.7167 L12: -0.9853 REMARK 3 L13: -0.1572 L23: -3.6588 REMARK 3 S TENSOR REMARK 3 S11: -0.1215 S12: 0.1692 S13: 0.1447 REMARK 3 S21: -0.0287 S22: 0.2722 S23: 0.4812 REMARK 3 S31: -0.2370 S32: -0.4272 S33: -0.1507 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5365 40.3357 47.3261 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.0575 REMARK 3 T33: 0.0434 T12: 0.0513 REMARK 3 T13: -0.0061 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.5504 L22: 2.4693 REMARK 3 L33: 1.5788 L12: -1.6585 REMARK 3 L13: 1.3829 L23: -1.5781 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0860 S13: 0.1842 REMARK 3 S21: 0.0077 S22: 0.0416 S23: 0.0463 REMARK 3 S31: -0.2873 S32: -0.1281 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5434 31.3523 42.8156 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0623 REMARK 3 T33: 0.0558 T12: 0.0231 REMARK 3 T13: 0.0144 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 15.0300 L22: 4.3213 REMARK 3 L33: 9.1576 L12: -0.9547 REMARK 3 L13: 5.3680 L23: 2.8581 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.4359 S13: -0.3070 REMARK 3 S21: -0.3950 S22: -0.0926 S23: 0.1988 REMARK 3 S31: -0.0145 S32: -0.1507 S33: 0.0660 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1438 33.9247 55.5295 REMARK 3 T TENSOR REMARK 3 T11: 0.0495 T22: 0.0245 REMARK 3 T33: 0.0520 T12: 0.0256 REMARK 3 T13: -0.0329 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 5.3373 L22: 1.1008 REMARK 3 L33: 3.1795 L12: 1.3568 REMARK 3 L13: -3.4609 L23: -1.7201 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.1778 S13: 0.1341 REMARK 3 S21: 0.1067 S22: 0.0752 S23: -0.0099 REMARK 3 S31: -0.1051 S32: -0.1491 S33: -0.0275 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3186 43.3967 48.9949 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.1426 REMARK 3 T33: 0.1419 T12: -0.0118 REMARK 3 T13: -0.0043 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 5.2398 L22: 2.4778 REMARK 3 L33: 6.2711 L12: 2.6622 REMARK 3 L13: -1.4448 L23: -1.8811 REMARK 3 S TENSOR REMARK 3 S11: -0.3879 S12: -0.2545 S13: 0.0275 REMARK 3 S21: -0.2378 S22: 0.0627 S23: -0.2841 REMARK 3 S31: -0.0728 S32: 0.5480 S33: 0.3252 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6212 48.6336 45.3082 REMARK 3 T TENSOR REMARK 3 T11: 0.8650 T22: 0.8303 REMARK 3 T33: 0.8933 T12: 0.0044 REMARK 3 T13: 0.0635 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 1.3791 L22: 12.0824 REMARK 3 L33: 0.4047 L12: 3.9347 REMARK 3 L13: 0.7297 L23: 2.1940 REMARK 3 S TENSOR REMARK 3 S11: -0.2115 S12: 0.2029 S13: 0.1230 REMARK 3 S21: -0.9174 S22: 0.2275 S23: -0.4320 REMARK 3 S31: -0.2078 S32: 0.0765 S33: -0.0160 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3079 52.3859 51.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.0764 REMARK 3 T33: 0.1224 T12: 0.0602 REMARK 3 T13: -0.0049 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 10.4075 L22: 5.3064 REMARK 3 L33: 5.3100 L12: 2.9113 REMARK 3 L13: -1.2050 L23: -0.1878 REMARK 3 S TENSOR REMARK 3 S11: 0.1471 S12: -0.3127 S13: 0.5725 REMARK 3 S21: 0.1271 S22: -0.1036 S23: -0.0894 REMARK 3 S31: -0.4918 S32: 0.3025 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0202 24.9188 65.5312 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.2450 REMARK 3 T33: 0.2141 T12: -0.0046 REMARK 3 T13: 0.0414 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0401 L22: 4.4529 REMARK 3 L33: 4.2625 L12: -0.1751 REMARK 3 L13: -0.0852 L23: -3.5010 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0665 S13: -0.0618 REMARK 3 S21: -0.0969 S22: 0.1177 S23: 0.5297 REMARK 3 S31: 0.2522 S32: -0.5416 S33: -0.1007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1V4N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%PPG400, 75MM MGCL2, BIS-TRIS, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.62450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.62450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.62450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 80.64800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 40.32400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 69.84322 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 VAL A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 109 -4.43 70.25 REMARK 500 ASP A 224 154.52 -46.49 REMARK 500 CYS A 225 -6.61 -53.41 REMARK 500 ASN A 229 -55.38 -135.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 4GLF A 1 297 UNP C6KFA4 C6KFA4_9BACT 1 297 SEQRES 1 A 297 MET THR SER THR ALA VAL GLU ILE THR VAL LYS ASN ALA SEQRES 2 A 297 ALA ASP ILE ALA ILE ILE GLY GLY SER GLY LEU TYR GLN SEQRES 3 A 297 MET GLN ALA LEU THR ASN LYS ARG SER VAL LYS ILE GLU SEQRES 4 A 297 THR PRO TYR GLY GLU PRO SER ASP ASP ILE VAL LEU GLY SEQRES 5 A 297 GLU LEU ASN GLY VAL THR VAL ALA PHE LEU THR ARG HIS SEQRES 6 A 297 GLY GLN GLY HIS ARG LEU THR PRO SER GLU VAL PRO TYR SEQRES 7 A 297 ARG ALA ASN ILE TYR ALA LEU LYS THR LEU GLY VAL ARG SEQRES 8 A 297 TYR ILE VAL SER VAL SER ALA VAL GLY SER LEU GLN GLU SEQRES 9 A 297 THR LEU LYS PRO LEU ASP MET VAL ILE PRO ASP GLN MET SEQRES 10 A 297 ILE ASP MET THR LYS GLN ARG VAL SER THR PHE PHE GLY SEQRES 11 A 297 ASP GLY ALA VAL ALA HIS VAL SER MET ALA ASP PRO LEU SEQRES 12 A 297 CYS PRO GLU VAL ALA ASP ILE LEU ILE ARG ALA TYR ASP SEQRES 13 A 297 ASN ALA ASP ILE ALA ASP GLY GLN CYS HIS ALA LYS ALA SEQRES 14 A 297 THR TYR VAL CYS ILE GLU GLY PRO GLN PHE SER THR ARG SEQRES 15 A 297 ALA GLU SER HIS TRP TYR ARG GLN MET GLN ALA ASP ILE SEQRES 16 A 297 ILE GLY MET THR ASN MET PRO GLU ALA LYS LEU ALA ARG SEQRES 17 A 297 GLU ALA SER ILE ALA TYR ALA THR LEU ALA LEU VAL THR SEQRES 18 A 297 ASP PHE ASP CYS TRP HIS PRO ASN GLU GLN ALA VAL SER SEQRES 19 A 297 ALA ASP TYR ALA ILE GLN ASN LEU MET LYS ASN ALA ASP SEQRES 20 A 297 ASN ALA GLN GLN VAL ILE LYS GLN ALA VAL ALA LEU ILE SEQRES 21 A 297 ALA SER GLU GLN PRO LYS SER ILE ALA HIS THR ALA LEU SEQRES 22 A 297 THR GLN ALA LEU VAL THR PRO VAL GLU ALA MET SER ALA SEQRES 23 A 297 GLU THR LYS THR ARG LEU ALA ALA LEU LEU PRO FORMUL 2 HOH *191(H2 O) HELIX 1 1 GLY A 66 ARG A 70 5 5 HELIX 2 2 THR A 72 VAL A 76 5 5 HELIX 3 3 PRO A 77 LEU A 88 1 12 HELIX 4 4 CYS A 144 ALA A 158 1 15 HELIX 5 5 THR A 181 MET A 191 1 11 HELIX 6 6 THR A 199 ALA A 210 1 12 HELIX 7 7 TYR A 237 GLN A 264 1 28 HELIX 8 8 SER A 267 ALA A 272 5 6 HELIX 9 9 PRO A 280 MET A 284 5 5 HELIX 10 10 SER A 285 LEU A 292 1 8 HELIX 11 11 ALA A 293 LEU A 296 5 4 SHEET 1 A10 LEU A 30 VAL A 36 0 SHEET 2 A10 ILE A 49 LEU A 54 -1 O LEU A 51 N ARG A 34 SHEET 3 A10 VAL A 57 THR A 63 -1 O PHE A 61 N VAL A 50 SHEET 4 A10 ILE A 16 GLY A 20 1 N ILE A 18 O ALA A 60 SHEET 5 A10 TYR A 92 SER A 101 1 O VAL A 96 N ILE A 19 SHEET 6 A10 ALA A 213 PHE A 223 1 O ALA A 213 N ILE A 93 SHEET 7 A10 MET A 111 ASP A 119 -1 N VAL A 112 O ALA A 218 SHEET 8 A10 CYS A 165 CYS A 173 1 O HIS A 166 N ILE A 113 SHEET 9 A10 ILE A 195 GLY A 197 1 O ILE A 195 N VAL A 172 SHEET 10 A10 TYR A 92 SER A 101 -1 N GLY A 100 O ILE A 196 CISPEP 1 GLY A 176 PRO A 177 0 3.56 CISPEP 2 MET A 201 PRO A 202 0 7.08 CRYST1 80.648 80.648 81.249 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012400 0.007159 0.000000 0.00000 SCALE2 0.000000 0.014318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012308 0.00000