HEADER SIGNALING PROTEIN 16-AUG-12 4GN1 TITLE CRYSTAL STRUCTURE OF THE RA AND PH DOMAINS OF LAMELLIPODIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-ASSOCIATED AND PLECKSTRIN HOMOLOGY DOMAINS-CONTAINING COMPND 3 PROTEIN 1; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: RA AND PH DOMAIN (UNP RESIDUES 266-520); COMPND 6 SYNONYM: RAPH1, AMYOTROPHIC LATERAL SCLEROSIS 2 CHROMOSOMAL REGION COMPND 7 CANDIDATE GENE 18 PROTEIN, AMYOTROPHIC LATERAL SCLEROSIS 2 COMPND 8 CHROMOSOMAL REGION CANDIDATE GENE 9 PROTEIN, LAMELLIPODIN, PROLINE- COMPND 9 RICH EVH1 LIGAND 2, PREL-2, PROTEIN RMO1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAPH1, ALS2CR18, ALS2CR9, KIAA1681, LPD, PREL2, RMO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RA-PH, COILED-COIL REGION, RAS-ASSOCIATION DOMAIN, PLECKSTRIN KEYWDS 2 HOMOLOGY DOMAIN, CYTOSKELETAL PROTEIN, ENA/VASP BINDING, CELL KEYWDS 3 MIGRATION, CELL ADHESION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.E.CHANG,J.WU REVDAT 3 13-SEP-23 4GN1 1 REMARK REVDAT 2 27-MAR-13 4GN1 1 JRNL REVDAT 1 28-NOV-12 4GN1 0 JRNL AUTH Y.C.CHANG,H.ZHANG,M.L.BRENNAN,J.WU JRNL TITL CRYSTAL STRUCTURE OF LAMELLIPODIN IMPLICATES DIVERSE JRNL TITL 2 FUNCTIONS IN ACTIN POLYMERIZATION AND RAS SIGNALING. JRNL REF PROTEIN CELL V. 4 211 2013 JRNL REFN ISSN 1674-800X JRNL PMID 23483482 JRNL DOI 10.1007/S13238-013-2082-5 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 39803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.746 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8400 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11313 ; 1.409 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 986 ; 6.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 416 ;37.659 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1636 ;18.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;23.057 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1214 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6254 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 518 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4221 -0.5170 21.1992 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.0686 REMARK 3 T33: 0.0657 T12: -0.0330 REMARK 3 T13: -0.0270 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.6775 L22: 1.9731 REMARK 3 L33: 1.5979 L12: 0.2573 REMARK 3 L13: 0.1502 L23: 0.1607 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: 0.2346 S13: 0.2705 REMARK 3 S21: -0.0309 S22: 0.0820 S23: -0.1206 REMARK 3 S31: -0.1773 S32: 0.2512 S33: 0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 268 B 517 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7053 -0.4972 40.8233 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.1223 REMARK 3 T33: 0.0356 T12: -0.0126 REMARK 3 T13: -0.0222 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.0855 L22: 1.9439 REMARK 3 L33: 1.8119 L12: 0.2792 REMARK 3 L13: 0.3911 L23: 0.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.1283 S12: 0.3588 S13: 0.1143 REMARK 3 S21: -0.0384 S22: 0.1328 S23: -0.1527 REMARK 3 S31: -0.1943 S32: 0.3272 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 268 C 517 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0036 -0.1958 -16.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.1668 REMARK 3 T33: 0.0532 T12: 0.0467 REMARK 3 T13: 0.0002 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.2229 L22: 2.0033 REMARK 3 L33: 1.8506 L12: 0.5296 REMARK 3 L13: 0.4855 L23: 0.3981 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: 0.4705 S13: 0.0874 REMARK 3 S21: -0.0256 S22: 0.0970 S23: -0.1124 REMARK 3 S31: 0.0239 S32: 0.3727 S33: -0.1540 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 268 D 517 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5620 -0.2017 2.6752 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.1588 REMARK 3 T33: 0.0795 T12: -0.0634 REMARK 3 T13: -0.0497 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 2.6026 L22: 2.3381 REMARK 3 L33: 1.7729 L12: 0.1037 REMARK 3 L13: 0.6861 L23: 0.1678 REMARK 3 S TENSOR REMARK 3 S11: -0.1577 S12: 0.5394 S13: 0.3985 REMARK 3 S21: -0.0259 S22: 0.0030 S23: -0.0765 REMARK 3 S31: -0.2277 S32: 0.4134 S33: 0.1547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ARP/WARP REMARK 200 STARTING MODEL: PDB ENTRY 3TCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM MALONATE PH 5.0, 20% REMARK 280 (W/V) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.73250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 266 REMARK 465 GLN A 267 REMARK 465 ARG A 519 REMARK 465 THR A 520 REMARK 465 ALA B 266 REMARK 465 GLN B 267 REMARK 465 LYS B 518 REMARK 465 ARG B 519 REMARK 465 THR B 520 REMARK 465 ALA C 266 REMARK 465 GLN C 267 REMARK 465 LYS C 430 REMARK 465 GLY C 431 REMARK 465 LYS C 432 REMARK 465 ALA C 433 REMARK 465 LYS C 434 REMARK 465 VAL C 435 REMARK 465 SER C 436 REMARK 465 ARG C 437 REMARK 465 ASP C 438 REMARK 465 LEU C 439 REMARK 465 LYS C 518 REMARK 465 ARG C 519 REMARK 465 THR C 520 REMARK 465 ALA D 266 REMARK 465 GLN D 267 REMARK 465 LYS D 430 REMARK 465 GLY D 431 REMARK 465 LYS D 432 REMARK 465 ALA D 433 REMARK 465 LYS D 434 REMARK 465 VAL D 435 REMARK 465 SER D 436 REMARK 465 ARG D 437 REMARK 465 ASP D 438 REMARK 465 LEU D 439 REMARK 465 LYS D 518 REMARK 465 ARG D 519 REMARK 465 THR D 520 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 280 -11.69 73.08 REMARK 500 SER A 309 139.09 176.77 REMARK 500 LEU A 359 -36.94 -38.05 REMARK 500 LYS A 370 64.34 60.95 REMARK 500 THR A 395 76.06 -108.57 REMARK 500 LYS A 411 42.17 -82.42 REMARK 500 LEU A 517 41.26 -79.94 REMARK 500 ASP B 280 -5.29 81.88 REMARK 500 LYS B 370 76.14 67.74 REMARK 500 LYS B 411 48.33 -87.17 REMARK 500 LYS B 430 -75.34 -68.03 REMARK 500 ALA B 433 -95.93 -113.25 REMARK 500 LYS B 434 83.62 -68.43 REMARK 500 ASP C 280 3.73 59.70 REMARK 500 TYR C 366 -39.27 -132.14 REMARK 500 LYS C 411 57.98 -105.62 REMARK 500 TYR C 427 160.52 177.65 REMARK 500 LEU D 338 -33.13 -39.29 REMARK 500 TYR D 366 -57.69 -128.06 REMARK 500 LYS D 411 46.56 -79.79 REMARK 500 ARG D 416 141.28 -172.19 REMARK 500 TYR D 481 36.13 -88.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI D 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GMV RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT ENCOMPASS THE COILED-COIL, RA AND PH DOMAINS DBREF 4GN1 A 266 520 UNP Q70E73 RAPH1_HUMAN 266 520 DBREF 4GN1 B 266 520 UNP Q70E73 RAPH1_HUMAN 266 520 DBREF 4GN1 C 266 520 UNP Q70E73 RAPH1_HUMAN 266 520 DBREF 4GN1 D 266 520 UNP Q70E73 RAPH1_HUMAN 266 520 SEQRES 1 A 255 ALA GLN VAL LYS LYS LEU VAL ILE ARG VAL HIS MET SER SEQRES 2 A 255 ASP ASP SER SER LYS THR MET MET VAL ASP GLU ARG GLN SEQRES 3 A 255 THR VAL ARG GLN VAL LEU ASP ASN LEU MET ASP LYS SER SEQRES 4 A 255 HIS CYS GLY TYR SER LEU ASP TRP SER LEU VAL GLU THR SEQRES 5 A 255 VAL SER GLU LEU GLN MET GLU ARG ILE PHE GLU ASP HIS SEQRES 6 A 255 GLU ASN LEU VAL GLU ASN LEU LEU ASN TRP THR ARG ASP SEQRES 7 A 255 SER GLN ASN LYS LEU ILE PHE MET GLU ARG ILE GLU LYS SEQRES 8 A 255 TYR ALA LEU PHE LYS ASN PRO GLN ASN TYR LEU LEU GLY SEQRES 9 A 255 LYS LYS GLU THR ALA GLU MET ALA ASP ARG ASN LYS GLU SEQRES 10 A 255 VAL LEU LEU GLU GLU CYS PHE CYS GLY SER SER VAL THR SEQRES 11 A 255 VAL PRO GLU ILE GLU GLY VAL LEU TRP LEU LYS ASP ASP SEQRES 12 A 255 GLY LYS LYS SER TRP LYS LYS ARG TYR PHE LEU LEU ARG SEQRES 13 A 255 ALA SER GLY ILE TYR TYR VAL PRO LYS GLY LYS ALA LYS SEQRES 14 A 255 VAL SER ARG ASP LEU VAL CYS PHE LEU GLN LEU ASP HIS SEQRES 15 A 255 VAL ASN VAL TYR TYR GLY GLN ASP TYR ARG ASN LYS TYR SEQRES 16 A 255 LYS ALA PRO THR ASP TYR CYS LEU VAL LEU LYS HIS PRO SEQRES 17 A 255 GLN ILE GLN LYS LYS SER GLN TYR ILE LYS TYR LEU CYS SEQRES 18 A 255 CYS ASP ASP VAL ARG THR LEU HIS GLN TRP VAL ASN GLY SEQRES 19 A 255 ILE ARG ILE ALA LYS TYR GLY LYS GLN LEU TYR MET ASN SEQRES 20 A 255 TYR GLN GLU ALA LEU LYS ARG THR SEQRES 1 B 255 ALA GLN VAL LYS LYS LEU VAL ILE ARG VAL HIS MET SER SEQRES 2 B 255 ASP ASP SER SER LYS THR MET MET VAL ASP GLU ARG GLN SEQRES 3 B 255 THR VAL ARG GLN VAL LEU ASP ASN LEU MET ASP LYS SER SEQRES 4 B 255 HIS CYS GLY TYR SER LEU ASP TRP SER LEU VAL GLU THR SEQRES 5 B 255 VAL SER GLU LEU GLN MET GLU ARG ILE PHE GLU ASP HIS SEQRES 6 B 255 GLU ASN LEU VAL GLU ASN LEU LEU ASN TRP THR ARG ASP SEQRES 7 B 255 SER GLN ASN LYS LEU ILE PHE MET GLU ARG ILE GLU LYS SEQRES 8 B 255 TYR ALA LEU PHE LYS ASN PRO GLN ASN TYR LEU LEU GLY SEQRES 9 B 255 LYS LYS GLU THR ALA GLU MET ALA ASP ARG ASN LYS GLU SEQRES 10 B 255 VAL LEU LEU GLU GLU CYS PHE CYS GLY SER SER VAL THR SEQRES 11 B 255 VAL PRO GLU ILE GLU GLY VAL LEU TRP LEU LYS ASP ASP SEQRES 12 B 255 GLY LYS LYS SER TRP LYS LYS ARG TYR PHE LEU LEU ARG SEQRES 13 B 255 ALA SER GLY ILE TYR TYR VAL PRO LYS GLY LYS ALA LYS SEQRES 14 B 255 VAL SER ARG ASP LEU VAL CYS PHE LEU GLN LEU ASP HIS SEQRES 15 B 255 VAL ASN VAL TYR TYR GLY GLN ASP TYR ARG ASN LYS TYR SEQRES 16 B 255 LYS ALA PRO THR ASP TYR CYS LEU VAL LEU LYS HIS PRO SEQRES 17 B 255 GLN ILE GLN LYS LYS SER GLN TYR ILE LYS TYR LEU CYS SEQRES 18 B 255 CYS ASP ASP VAL ARG THR LEU HIS GLN TRP VAL ASN GLY SEQRES 19 B 255 ILE ARG ILE ALA LYS TYR GLY LYS GLN LEU TYR MET ASN SEQRES 20 B 255 TYR GLN GLU ALA LEU LYS ARG THR SEQRES 1 C 255 ALA GLN VAL LYS LYS LEU VAL ILE ARG VAL HIS MET SER SEQRES 2 C 255 ASP ASP SER SER LYS THR MET MET VAL ASP GLU ARG GLN SEQRES 3 C 255 THR VAL ARG GLN VAL LEU ASP ASN LEU MET ASP LYS SER SEQRES 4 C 255 HIS CYS GLY TYR SER LEU ASP TRP SER LEU VAL GLU THR SEQRES 5 C 255 VAL SER GLU LEU GLN MET GLU ARG ILE PHE GLU ASP HIS SEQRES 6 C 255 GLU ASN LEU VAL GLU ASN LEU LEU ASN TRP THR ARG ASP SEQRES 7 C 255 SER GLN ASN LYS LEU ILE PHE MET GLU ARG ILE GLU LYS SEQRES 8 C 255 TYR ALA LEU PHE LYS ASN PRO GLN ASN TYR LEU LEU GLY SEQRES 9 C 255 LYS LYS GLU THR ALA GLU MET ALA ASP ARG ASN LYS GLU SEQRES 10 C 255 VAL LEU LEU GLU GLU CYS PHE CYS GLY SER SER VAL THR SEQRES 11 C 255 VAL PRO GLU ILE GLU GLY VAL LEU TRP LEU LYS ASP ASP SEQRES 12 C 255 GLY LYS LYS SER TRP LYS LYS ARG TYR PHE LEU LEU ARG SEQRES 13 C 255 ALA SER GLY ILE TYR TYR VAL PRO LYS GLY LYS ALA LYS SEQRES 14 C 255 VAL SER ARG ASP LEU VAL CYS PHE LEU GLN LEU ASP HIS SEQRES 15 C 255 VAL ASN VAL TYR TYR GLY GLN ASP TYR ARG ASN LYS TYR SEQRES 16 C 255 LYS ALA PRO THR ASP TYR CYS LEU VAL LEU LYS HIS PRO SEQRES 17 C 255 GLN ILE GLN LYS LYS SER GLN TYR ILE LYS TYR LEU CYS SEQRES 18 C 255 CYS ASP ASP VAL ARG THR LEU HIS GLN TRP VAL ASN GLY SEQRES 19 C 255 ILE ARG ILE ALA LYS TYR GLY LYS GLN LEU TYR MET ASN SEQRES 20 C 255 TYR GLN GLU ALA LEU LYS ARG THR SEQRES 1 D 255 ALA GLN VAL LYS LYS LEU VAL ILE ARG VAL HIS MET SER SEQRES 2 D 255 ASP ASP SER SER LYS THR MET MET VAL ASP GLU ARG GLN SEQRES 3 D 255 THR VAL ARG GLN VAL LEU ASP ASN LEU MET ASP LYS SER SEQRES 4 D 255 HIS CYS GLY TYR SER LEU ASP TRP SER LEU VAL GLU THR SEQRES 5 D 255 VAL SER GLU LEU GLN MET GLU ARG ILE PHE GLU ASP HIS SEQRES 6 D 255 GLU ASN LEU VAL GLU ASN LEU LEU ASN TRP THR ARG ASP SEQRES 7 D 255 SER GLN ASN LYS LEU ILE PHE MET GLU ARG ILE GLU LYS SEQRES 8 D 255 TYR ALA LEU PHE LYS ASN PRO GLN ASN TYR LEU LEU GLY SEQRES 9 D 255 LYS LYS GLU THR ALA GLU MET ALA ASP ARG ASN LYS GLU SEQRES 10 D 255 VAL LEU LEU GLU GLU CYS PHE CYS GLY SER SER VAL THR SEQRES 11 D 255 VAL PRO GLU ILE GLU GLY VAL LEU TRP LEU LYS ASP ASP SEQRES 12 D 255 GLY LYS LYS SER TRP LYS LYS ARG TYR PHE LEU LEU ARG SEQRES 13 D 255 ALA SER GLY ILE TYR TYR VAL PRO LYS GLY LYS ALA LYS SEQRES 14 D 255 VAL SER ARG ASP LEU VAL CYS PHE LEU GLN LEU ASP HIS SEQRES 15 D 255 VAL ASN VAL TYR TYR GLY GLN ASP TYR ARG ASN LYS TYR SEQRES 16 D 255 LYS ALA PRO THR ASP TYR CYS LEU VAL LEU LYS HIS PRO SEQRES 17 D 255 GLN ILE GLN LYS LYS SER GLN TYR ILE LYS TYR LEU CYS SEQRES 18 D 255 CYS ASP ASP VAL ARG THR LEU HIS GLN TRP VAL ASN GLY SEQRES 19 D 255 ILE ARG ILE ALA LYS TYR GLY LYS GLN LEU TYR MET ASN SEQRES 20 D 255 TYR GLN GLU ALA LEU LYS ARG THR HET MLI A 601 7 HET MLI B 601 7 HET MLI C 601 7 HET MLI D 601 7 HETNAM MLI MALONATE ION FORMUL 5 MLI 4(C3 H2 O4 2-) FORMUL 9 HOH *249(H2 O) HELIX 1 1 THR A 292 HIS A 305 1 14 HELIX 2 2 SER A 319 LEU A 321 5 3 HELIX 3 3 ASN A 332 LEU A 338 1 7 HELIX 4 4 ILE A 354 LYS A 356 5 3 HELIX 5 5 TYR A 357 ASN A 362 1 6 HELIX 6 6 PRO A 363 TYR A 366 5 4 HELIX 7 7 ALA A 377 CYS A 390 1 14 HELIX 8 8 VAL A 435 LEU A 439 5 5 HELIX 9 9 ASP A 455 TYR A 460 1 6 HELIX 10 10 ASP A 489 GLY A 506 1 18 HELIX 11 11 GLY A 506 LEU A 517 1 12 HELIX 12 12 THR B 292 HIS B 305 1 14 HELIX 13 13 ASN B 332 LEU B 338 1 7 HELIX 14 14 ILE B 354 LYS B 356 5 3 HELIX 15 15 TYR B 357 ASN B 362 1 6 HELIX 16 16 PRO B 363 TYR B 366 5 4 HELIX 17 17 ALA B 377 CYS B 390 1 14 HELIX 18 18 VAL B 435 LEU B 439 5 5 HELIX 19 19 ASP B 455 TYR B 460 1 6 HELIX 20 20 ASP B 489 GLY B 506 1 18 HELIX 21 21 GLY B 506 LEU B 517 1 12 HELIX 22 22 THR C 292 HIS C 305 1 14 HELIX 23 23 SER C 319 LEU C 321 5 3 HELIX 24 24 ASN C 332 LEU C 338 1 7 HELIX 25 25 ILE C 354 LYS C 356 5 3 HELIX 26 26 TYR C 357 ASN C 362 1 6 HELIX 27 27 PRO C 363 TYR C 366 5 4 HELIX 28 28 ALA C 377 CYS C 390 1 14 HELIX 29 29 GLN C 444 VAL C 448 5 5 HELIX 30 30 ASP C 455 LYS C 461 1 7 HELIX 31 31 ASP C 489 GLY C 506 1 18 HELIX 32 32 GLY C 506 LEU C 517 1 12 HELIX 33 33 THR D 292 HIS D 305 1 14 HELIX 34 34 SER D 319 LEU D 321 5 3 HELIX 35 35 ASN D 332 LEU D 338 1 7 HELIX 36 36 ILE D 354 LYS D 356 5 3 HELIX 37 37 TYR D 357 ASN D 362 1 6 HELIX 38 38 PRO D 363 TYR D 366 5 4 HELIX 39 39 ALA D 377 CYS D 390 1 14 HELIX 40 40 ASP D 455 LYS D 461 1 7 HELIX 41 41 ASP D 489 GLY D 506 1 18 HELIX 42 42 GLY D 506 LEU D 517 1 12 SHEET 1 A12 SER A 282 ASP A 288 0 SHEET 2 A12 LYS A 270 HIS A 276 -1 N LEU A 271 O VAL A 287 SHEET 3 A12 LEU A 348 GLU A 352 1 O LEU A 348 N HIS A 276 SHEET 4 A12 TRP A 312 VAL A 318 -1 N VAL A 315 O ILE A 349 SHEET 5 A12 MET A 323 ILE A 326 -1 O ARG A 325 N GLU A 316 SHEET 6 A12 ASN A 449 GLY A 453 -1 O TYR A 452 N GLU A 324 SHEET 7 A12 CYS A 467 LYS A 471 -1 O VAL A 469 N TYR A 451 SHEET 8 A12 LYS A 483 CYS A 486 -1 O LEU A 485 N LEU A 468 SHEET 9 A12 GLU A 400 LYS A 406 -1 N TRP A 404 O CYS A 486 SHEET 10 A12 TRP A 413 ARG A 421 -1 O PHE A 418 N GLY A 401 SHEET 11 A12 GLY A 424 TYR A 427 -1 O GLY A 424 N ARG A 421 SHEET 12 A12 VAL A 440 LEU A 443 -1 O LEU A 443 N ILE A 425 SHEET 1 B 2 LYS B 270 HIS B 276 0 SHEET 2 B 2 SER B 282 ASP B 288 -1 O VAL B 287 N LEU B 271 SHEET 1 C10 LYS B 347 GLU B 352 0 SHEET 2 C10 TRP B 312 VAL B 318 -1 N VAL B 315 O ILE B 349 SHEET 3 C10 MET B 323 ILE B 326 -1 O ARG B 325 N GLU B 316 SHEET 4 C10 ASN B 449 GLY B 453 -1 O TYR B 452 N GLU B 324 SHEET 5 C10 CYS B 467 LYS B 471 -1 O VAL B 469 N TYR B 451 SHEET 6 C10 LYS B 483 CYS B 486 -1 O LEU B 485 N LEU B 468 SHEET 7 C10 ILE B 399 LYS B 406 -1 N TRP B 404 O CYS B 486 SHEET 8 C10 TRP B 413 ARG B 421 -1 O ARG B 416 N LEU B 403 SHEET 9 C10 GLY B 424 TYR B 427 -1 O GLY B 424 N ARG B 421 SHEET 10 C10 VAL B 440 LEU B 443 -1 O LEU B 443 N ILE B 425 SHEET 1 D 2 LYS C 270 HIS C 276 0 SHEET 2 D 2 SER C 282 ASP C 288 -1 O VAL C 287 N LEU C 271 SHEET 1 E10 LEU C 348 GLU C 352 0 SHEET 2 E10 TRP C 312 VAL C 318 -1 N VAL C 315 O ILE C 349 SHEET 3 E10 MET C 323 ILE C 326 -1 O ARG C 325 N GLU C 316 SHEET 4 E10 ASN C 449 GLY C 453 -1 O TYR C 452 N GLU C 324 SHEET 5 E10 CYS C 467 LYS C 471 -1 O VAL C 469 N TYR C 451 SHEET 6 E10 LYS C 483 CYS C 486 -1 O LEU C 485 N LEU C 468 SHEET 7 E10 GLU C 400 LYS C 406 -1 N TRP C 404 O CYS C 486 SHEET 8 E10 TRP C 413 ARG C 421 -1 O LYS C 414 N LEU C 405 SHEET 9 E10 GLY C 424 TYR C 426 -1 O TYR C 426 N LEU C 419 SHEET 10 E10 CYS C 441 LEU C 443 -1 O LEU C 443 N ILE C 425 SHEET 1 F 2 LYS D 270 HIS D 276 0 SHEET 2 F 2 SER D 282 ASP D 288 -1 O VAL D 287 N LEU D 271 SHEET 1 G10 LEU D 348 GLU D 352 0 SHEET 2 G10 TRP D 312 VAL D 318 -1 N VAL D 315 O ILE D 349 SHEET 3 G10 MET D 323 ILE D 326 -1 O MET D 323 N VAL D 318 SHEET 4 G10 ASN D 449 GLY D 453 -1 O TYR D 452 N GLU D 324 SHEET 5 G10 TYR D 466 LYS D 471 -1 O VAL D 469 N TYR D 451 SHEET 6 G10 LYS D 483 CYS D 487 -1 O CYS D 487 N TYR D 466 SHEET 7 G10 GLU D 400 LYS D 406 -1 N TRP D 404 O CYS D 486 SHEET 8 G10 TRP D 413 ARG D 421 -1 O LYS D 414 N LEU D 405 SHEET 9 G10 GLY D 424 TYR D 426 -1 O TYR D 426 N LEU D 419 SHEET 10 G10 CYS D 441 LEU D 443 -1 O LEU D 443 N ILE D 425 CISPEP 1 GLY A 369 LYS A 370 0 -0.22 CISPEP 2 GLY B 369 LYS B 370 0 -5.39 CISPEP 3 LYS B 432 ALA B 433 0 -4.17 SITE 1 AC1 11 GLU A 316 VAL A 318 ARG A 325 PHE A 327 SITE 2 AC1 11 ASN A 336 ASN A 339 ASN A 449 TYR A 451 SITE 3 AC1 11 LYS A 471 PRO A 473 GLN A 476 SITE 1 AC2 11 GLU B 316 VAL B 318 ARG B 325 PHE B 327 SITE 2 AC2 11 ASN B 336 ASN B 339 ASN B 449 TYR B 451 SITE 3 AC2 11 LYS B 471 PRO B 473 GLN B 476 SITE 1 AC3 10 GLU C 316 ARG C 325 PHE C 327 ASN C 336 SITE 2 AC3 10 ASN C 339 ASN C 449 TYR C 451 LYS C 471 SITE 3 AC3 10 PRO C 473 GLN C 476 SITE 1 AC4 11 GLU D 316 VAL D 318 ARG D 325 PHE D 327 SITE 2 AC4 11 ASN D 336 ASN D 339 ASN D 449 TYR D 451 SITE 3 AC4 11 LYS D 471 PRO D 473 GLN D 476 CRYST1 75.340 93.465 80.720 90.00 104.91 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013273 0.000000 0.003534 0.00000 SCALE2 0.000000 0.010699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012820 0.00000