HEADER DE NOVO PROTEIN/HYDROLASE 16-AUG-12 4GN4 TITLE OBODY AM2EP06 BOUND TO HEN EGG-WHITE LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: OBODY AM2EP06; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LYSOZYME C; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 19-147; COMPND 9 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 10 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 GENE: ASPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5[ALPHA]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 12 ORGANISM_COMMON: CHICKEN; SOURCE 13 ORGANISM_TAXID: 9031; SOURCE 14 TISSUE: EGG WHITE KEYWDS BETA BARREL, OB-FOLD, PROTEIN-PROTEIN COMPLEX, NOVEL SCAFFOLD, KEYWDS 2 MURAMINIDASE, ENZYME INHIBITION, ENGINEERED BINDING PROTEIN, KEYWDS 3 INHIBITOR, DE NOVO PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.STEEMSON,M.T.LIDDAMENT REVDAT 2 12-FEB-14 4GN4 1 JRNL REVDAT 1 21-AUG-13 4GN4 0 JRNL AUTH J.D.STEEMSON,M.BAAKE,J.RAKONJAC,V.L.ARCUS,M.T.LIDDAMENT JRNL TITL TRACKING MOLECULAR RECOGNITION AT THE ATOMIC LEVEL WITH A JRNL TITL 2 NEW PROTEIN SCAFFOLD BASED ON THE OB-FOLD. JRNL REF PLOS ONE V. 9 86050 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24465865 JRNL DOI 10.1371/JOURNAL.PONE.0086050 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.90000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1935 ; 0.026 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2629 ; 1.948 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 6.205 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;37.560 ;23.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;13.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.741 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1471 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1196 ; 1.202 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1923 ; 1.771 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 739 ; 2.767 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 703 ; 3.896 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9934 9.4077 5.1161 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1452 REMARK 3 T33: 0.0853 T12: 0.0958 REMARK 3 T13: 0.0225 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 6.6455 L22: 7.8197 REMARK 3 L33: 3.5956 L12: 3.6499 REMARK 3 L13: -1.1702 L23: -1.7252 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 0.2217 S13: -0.4899 REMARK 3 S21: -0.2052 S22: -0.0945 S23: -0.3839 REMARK 3 S31: 0.4609 S32: 0.4488 S33: 0.1460 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4049 16.1944 14.7885 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0568 REMARK 3 T33: 0.0406 T12: 0.0239 REMARK 3 T13: -0.0150 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 4.2687 L22: 1.8631 REMARK 3 L33: 5.3691 L12: -0.0981 REMARK 3 L13: -0.5325 L23: 0.2608 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: -0.2018 S13: 0.1518 REMARK 3 S21: 0.0285 S22: 0.1156 S23: -0.0372 REMARK 3 S31: -0.1272 S32: 0.3353 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2891 10.8982 29.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.5541 REMARK 3 T33: 0.0615 T12: 0.1296 REMARK 3 T13: -0.0043 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.9652 L22: 9.3398 REMARK 3 L33: 4.6972 L12: 1.9170 REMARK 3 L13: 2.0336 L23: 1.2289 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: -1.3268 S13: -0.0390 REMARK 3 S21: 0.6623 S22: 0.1169 S23: -0.1138 REMARK 3 S31: 0.2691 S32: 0.5362 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4145 9.8654 16.5327 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.0783 REMARK 3 T33: 0.0520 T12: 0.0606 REMARK 3 T13: 0.0213 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 6.0206 L22: 1.7070 REMARK 3 L33: 2.7639 L12: -0.4103 REMARK 3 L13: -0.3664 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: -0.1556 S12: -0.3888 S13: -0.2802 REMARK 3 S21: 0.0546 S22: 0.0215 S23: -0.0532 REMARK 3 S31: 0.2611 S32: 0.3704 S33: 0.1341 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8063 14.2240 -0.2005 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1234 REMARK 3 T33: 0.0487 T12: -0.0206 REMARK 3 T13: -0.0250 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 17.2371 L22: 1.5646 REMARK 3 L33: 15.2674 L12: -2.2471 REMARK 3 L13: -11.5533 L23: 0.2289 REMARK 3 S TENSOR REMARK 3 S11: -0.1810 S12: 1.2262 S13: -0.3576 REMARK 3 S21: -0.3859 S22: -0.0881 S23: 0.0097 REMARK 3 S31: 0.2788 S32: -0.6537 S33: 0.2691 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6661 8.6605 23.2513 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.0662 REMARK 3 T33: 0.1184 T12: 0.0406 REMARK 3 T13: 0.0468 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 5.9512 L22: 3.4122 REMARK 3 L33: 4.4570 L12: -0.5986 REMARK 3 L13: 2.4330 L23: -1.2513 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.3577 S13: 0.1051 REMARK 3 S21: 0.1638 S22: 0.1366 S23: 0.3719 REMARK 3 S31: -0.1091 S32: -0.4437 S33: -0.0817 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5584 9.1252 22.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.0919 REMARK 3 T33: 0.0695 T12: 0.0540 REMARK 3 T13: 0.0175 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 6.3760 L22: 4.0138 REMARK 3 L33: 1.3045 L12: 4.6361 REMARK 3 L13: -0.2041 L23: -0.9263 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.0686 S13: 0.1854 REMARK 3 S21: 0.0736 S22: 0.1005 S23: 0.2105 REMARK 3 S31: -0.0354 S32: 0.0369 S33: -0.0870 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1784 14.3521 30.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.1635 REMARK 3 T33: 0.0739 T12: 0.0468 REMARK 3 T13: 0.0229 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 7.5895 L22: 5.5233 REMARK 3 L33: 4.4564 L12: 1.1536 REMARK 3 L13: -0.3588 L23: -2.9478 REMARK 3 S TENSOR REMARK 3 S11: 0.2124 S12: -0.6797 S13: 0.5107 REMARK 3 S21: 0.4739 S22: -0.2620 S23: -0.1088 REMARK 3 S31: -0.3905 S32: 0.3135 S33: 0.0496 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3440 11.3755 16.9322 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.0815 REMARK 3 T33: 0.1669 T12: 0.0063 REMARK 3 T13: 0.0033 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 6.6460 L22: 3.7690 REMARK 3 L33: 3.0681 L12: -0.6534 REMARK 3 L13: 0.1082 L23: -0.3670 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 0.4960 S13: -0.0302 REMARK 3 S21: -0.4774 S22: 0.1121 S23: -0.1896 REMARK 3 S31: 0.0101 S32: 0.0706 S33: -0.2059 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8518 9.2777 36.9869 REMARK 3 T TENSOR REMARK 3 T11: 0.3594 T22: 0.3847 REMARK 3 T33: 0.1161 T12: 0.0258 REMARK 3 T13: 0.0826 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 28.3683 L22: 28.2776 REMARK 3 L33: 18.0545 L12: -2.8378 REMARK 3 L13: 1.0991 L23: 5.6440 REMARK 3 S TENSOR REMARK 3 S11: 0.9060 S12: -1.1694 S13: -0.9492 REMARK 3 S21: 2.3950 S22: -0.5192 S23: 0.7518 REMARK 3 S31: 0.2526 S32: 0.4704 S33: -0.3867 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB074391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR 2300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.861 REMARK 200 RESOLUTION RANGE LOW (A) : 81.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22600 REMARK 200 R SYM FOR SHELL (I) : 0.22600 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M HEPES, 13% MPEG5000, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.21500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.21500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 4 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR B 2 CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 65 NZ REMARK 480 ARG B 72 CZ NH1 NH2 REMARK 480 LYS B 106 CE NZ REMARK 480 ARG A 45 CD NE CZ NH1 NH2 REMARK 480 ARG A 128 CD NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 388 O HOH A 392 2.11 REMARK 500 O HOH A 322 O HOH A 426 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 325 O HOH A 347 3545 2.00 REMARK 500 O HOH B 364 O HOH A 380 3545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 2 CG TYR B 2 CD2 0.573 REMARK 500 TYR B 2 CG TYR B 2 CD1 -0.344 REMARK 500 VAL B 50 CB VAL B 50 CG2 0.129 REMARK 500 TYR B 53 CD1 TYR B 53 CE1 0.117 REMARK 500 TYR B 53 CE2 TYR B 53 CD2 0.090 REMARK 500 ARG B 72 NE ARG B 72 CZ -0.137 REMARK 500 ARG A 45 CG ARG A 45 CD 0.204 REMARK 500 ARG A 128 NE ARG A 128 CZ 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 2 CB - CG - CD2 ANGL. DEV. = -29.1 DEGREES REMARK 500 TYR B 2 CD1 - CG - CD2 ANGL. DEV. = -18.4 DEGREES REMARK 500 TYR B 2 CB - CG - CD1 ANGL. DEV. = 29.1 DEGREES REMARK 500 TYR B 2 CG - CD1 - CE1 ANGL. DEV. = 19.1 DEGREES REMARK 500 TYR B 2 CG - CD2 - CE2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 72 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 128 CG - CD - NE ANGL. DEV. = -22.8 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -35.7 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 1 110.05 55.96 REMARK 500 LYS B 58 -53.72 -130.62 REMARK 500 GLU B 73 -3.80 70.41 REMARK 500 CYS A 115 -50.00 -122.57 REMARK 500 ASP A 119 79.02 -69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 2 0.08 SIDE CHAIN REMARK 500 ARG A 128 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GLA RELATED DB: PDB REMARK 900 RELATED ID: 4GLV RELATED DB: PDB REMARK 900 RELATED ID: 4GN3 RELATED DB: PDB REMARK 900 RELATED ID: 4GN5 RELATED DB: PDB DBREF 4GN4 A 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 4GN4 B 0 107 PDB 4GN4 4GN4 0 107 SEQRES 1 B 108 ALA VAL TYR PRO LYS LYS THR HIS TRP THR ALA GLU ILE SEQRES 2 B 108 THR PRO ASN LEU HIS GLY SER GLU VAL VAL VAL ALA GLY SEQRES 3 B 108 TRP VAL ALA HIS LEU GLY ASP TYR GLY ARG VAL LYS ILE SEQRES 4 B 108 VAL LYS VAL SER ASP ARG GLU GLY GLY ALA ALA VAL PRO SEQRES 5 B 108 VAL TYR LEU GLU ARG GLY LYS THR PRO ASP HIS LEU PHE SEQRES 6 B 108 LYS VAL PHE ALA GLU LEU SER ARG GLU ASP VAL VAL VAL SEQRES 7 B 108 ILE LYS GLY ILE VAL GLU ALA SER GLU GLN TYR GLY SER SEQRES 8 B 108 ALA THR GLY VAL GLU ILE PHE PRO SER GLU ILE TRP ILE SEQRES 9 B 108 LEU ASN LYS ALA SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET GOL B 201 6 HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *242(H2 O) HELIX 1 1 TRP B 8 ILE B 12 5 5 HELIX 2 2 THR B 13 HIS B 17 5 5 HELIX 3 3 PRO B 60 GLU B 69 1 10 HELIX 4 4 GLY A 4 HIS A 15 1 12 HELIX 5 5 ASN A 19 TYR A 23 5 5 HELIX 6 6 SER A 24 ASN A 37 1 14 HELIX 7 7 PRO A 79 SER A 85 5 7 HELIX 8 8 ILE A 88 SER A 100 1 13 HELIX 9 9 ASN A 103 ALA A 107 5 5 HELIX 10 10 TRP A 108 CYS A 115 1 8 HELIX 11 11 ASP A 119 ARG A 125 5 7 SHEET 1 A 6 GLU B 20 ASP B 32 0 SHEET 2 A 6 VAL B 36 SER B 42 -1 O LYS B 40 N ALA B 28 SHEET 3 A 6 VAL B 50 GLU B 55 -1 O LEU B 54 N LYS B 37 SHEET 4 A 6 VAL B 94 ASN B 105 1 O ILE B 96 N TYR B 53 SHEET 5 A 6 VAL B 75 ALA B 84 -1 N VAL B 77 O TRP B 102 SHEET 6 A 6 GLU B 20 ASP B 32 -1 N GLY B 25 O VAL B 76 SHEET 1 B 3 THR A 43 ARG A 45 0 SHEET 2 B 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 B 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.07 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.06 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.02 SITE 1 AC1 5 HIS B 62 LEU B 63 SER B 99 GLU B 100 SITE 2 AC1 5 ILE B 101 SITE 1 AC2 3 ARG A 5 ALA A 122 TRP A 123 SITE 1 AC3 10 LYS A 1 THR A 40 GLN A 41 LEU A 84 SITE 2 AC3 10 SER A 85 SER A 86 GOL A 203 HIS B 17 SITE 3 AC3 10 GLY B 18 SER B 19 SITE 1 AC4 7 GLN A 41 LEU A 84 SER A 85 GOL A 202 SITE 2 AC4 7 HOH A 420 SER B 19 GLU B 20 SITE 1 AC5 7 SER A 36 ASN A 39 ALA A 42 ASN A 44 SITE 2 AC5 7 HOH A 370 HOH A 387 HOH B 352 CRYST1 50.430 58.330 81.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019829 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012222 0.00000