HEADER ISOMERASE 17-AUG-12 4GNJ TITLE CRYSTAL STRUCTURE ANALYSIS OF LEISHMANIA SIAMENSIS TRIOSEPHOSPHATE TITLE 2 ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA SP. SIAMENSIS; SOURCE 3 ORGANISM_TAXID: 438838; SOURCE 4 STRAIN: ISOLATE PCM2; SOURCE 5 GENE: LSTIM, TIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.KUAPRASERT,P.RIANGRUNGROJ,W.PORNTHANAKASEM,W.SUGINTA,M.MUNGTHIN, AUTHOR 2 S.LEELAYOOVA,U.LEARTSAKULPANICH REVDAT 3 08-NOV-23 4GNJ 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4GNJ 1 REMARK REVDAT 1 11-SEP-13 4GNJ 0 JRNL AUTH B.KUAPRASERT,P.RIANGRUNGROJ,W.PORNTHANAKASEM,W.SUGINTA, JRNL AUTH 2 M.MUNGTHIN,S.LEELAYOOVA,U.LEARTSAKULPANICH JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF LEISHMANIA SIAMENSIS JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 33449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : 2310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.1513 REMARK 3 BIN FREE R VALUE SET COUNT : 1793 REMARK 3 BIN FREE R VALUE : 0.1993 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3920 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5350 ; 1.358 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 6.083 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;40.698 ;25.290 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;12.958 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.724 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2924 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 0.560 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4056 ; 0.982 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1287 ; 3.021 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4116 -0.0524 17.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0568 REMARK 3 T33: 0.0649 T12: -0.0064 REMARK 3 T13: -0.0081 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.7790 L22: 1.0561 REMARK 3 L33: 0.9870 L12: -0.1556 REMARK 3 L13: -0.1064 L23: -0.2888 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: -0.0670 S13: -0.0606 REMARK 3 S21: 0.0809 S22: -0.0085 S23: 0.0655 REMARK 3 S31: 0.0196 S32: -0.0363 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5590 39.5354 23.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: 0.0707 REMARK 3 T33: 0.0750 T12: -0.0040 REMARK 3 T13: -0.0044 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.9393 L22: 0.7786 REMARK 3 L33: 1.1834 L12: 0.2984 REMARK 3 L13: 0.1771 L23: 0.3829 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: 0.1820 S13: -0.0137 REMARK 3 S21: -0.1369 S22: 0.0486 S23: -0.0229 REMARK 3 S31: -0.0183 S32: 0.0199 S33: 0.0075 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5703 43.9101 18.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.3087 REMARK 3 T33: 0.1621 T12: 0.0523 REMARK 3 T13: 0.0454 T23: 0.1954 REMARK 3 L TENSOR REMARK 3 L11: 2.4529 L22: 0.8519 REMARK 3 L33: 1.4380 L12: -1.2163 REMARK 3 L13: -0.1713 L23: -0.5156 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: 0.2045 S13: -0.1396 REMARK 3 S21: -0.1275 S22: -0.0035 S23: 0.1276 REMARK 3 S31: 0.2088 S32: -0.1627 S33: -0.0771 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 302 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6436 26.5221 13.5236 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: 0.0405 REMARK 3 T33: 0.0360 T12: 0.0164 REMARK 3 T13: -0.0158 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 582 REMARK 3 RESIDUE RANGE : B 401 B 583 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5420 20.0537 20.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.2227 REMARK 3 T33: 0.2048 T12: -0.0035 REMARK 3 T13: 0.0076 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.0787 L22: 0.5961 REMARK 3 L33: 0.2847 L12: 0.0581 REMARK 3 L13: 0.0901 L23: 0.3839 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0264 S13: -0.0086 REMARK 3 S21: -0.0193 S22: -0.0032 S23: 0.0147 REMARK 3 S31: -0.0199 S32: -0.0174 S33: 0.0132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : HELIOS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX SX-165MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35257 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 81.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.20200 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.20200 REMARK 200 R SYM FOR SHELL (I) : 0.20200 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AMK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M CALCIUM ACETATE, 0.10M SODIUM REMARK 280 CACODYLATE TRIHYDRATE, 18% PEG 8000, PH 6.5, MICROBATCH, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 23.49867 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.59030 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 176 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 THR B 175 REMARK 465 GLY B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -139.22 53.66 REMARK 500 CYS A 15 62.55 -100.74 REMARK 500 LYS B 14 -139.14 54.95 REMARK 500 CYS B 15 65.19 -101.14 REMARK 500 ILE B 34 -62.14 -95.78 REMARK 500 ASP B 35 -53.89 80.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 HOH A 580 O 91.3 REMARK 620 3 HOH A 581 O 86.8 90.1 REMARK 620 4 GLU B 197 OE2 85.8 175.6 93.0 REMARK 620 5 GLU B 197 O 103.2 90.3 170.0 87.2 REMARK 620 6 HOH B 461 O 174.3 89.0 87.6 94.2 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 302 DBREF 4GNJ A 1 251 UNP I2APN2 I2APN2_9TRYP 1 251 DBREF 4GNJ B 1 251 UNP I2APN2 I2APN2_9TRYP 1 251 SEQADV 4GNJ MET A -19 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ GLY A -18 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER A -17 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER A -16 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A -15 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A -14 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A -13 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A -12 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A -11 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A -10 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER A -9 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER A -8 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ GLY A -7 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ LEU A -6 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ VAL A -5 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ PRO A -4 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ ARG A -3 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ GLY A -2 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER A -1 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS A 0 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ MET B -19 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ GLY B -18 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER B -17 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER B -16 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B -15 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B -14 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B -13 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B -12 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B -11 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B -10 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER B -9 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER B -8 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ GLY B -7 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ LEU B -6 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ VAL B -5 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ PRO B -4 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ ARG B -3 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ GLY B -2 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ SER B -1 UNP I2APN2 EXPRESSION TAG SEQADV 4GNJ HIS B 0 UNP I2APN2 EXPRESSION TAG SEQRES 1 A 271 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 271 LEU VAL PRO ARG GLY SER HIS MET SER ALA LYS PRO GLN SEQRES 3 A 271 PRO ILE VAL ALA ALA ASN TRP LYS CYS ASN GLY THR THR SEQRES 4 A 271 ALA SER ILE GLU LYS LEU VAL GLN VAL LEU ASN GLU HIS SEQRES 5 A 271 GLN ILE ASP HIS ASP VAL GLN CYS VAL VAL ALA PRO SER SEQRES 6 A 271 PHE VAL HIS ILE PRO MET VAL GLN ALA LYS LEU CYS ASN SEQRES 7 A 271 PRO LYS TYR ALA VAL SER ALA GLU ASN ALA ILE ALA LYS SEQRES 8 A 271 SER GLY ALA PHE THR GLY GLU VAL SER MET PRO ILE LEU SEQRES 9 A 271 LYS ASP LEU GLY VAL SER TRP VAL ILE LEU GLY HIS SER SEQRES 10 A 271 GLU ARG ARG THR TYR TYR GLY GLU THR ASP GLY VAL VAL SEQRES 11 A 271 ALA GLN LYS VAL ALA ASP ALA TYR ASN GLN GLY PHE MET SEQRES 12 A 271 VAL ILE ALA CYS ILE GLY GLU THR LEU GLN GLN ARG GLU SEQRES 13 A 271 ALA ASN GLN THR ALA LYS VAL VAL LEU SER GLN THR ALA SEQRES 14 A 271 ALA ILE ALA ALA LYS LEU PRO LYS GLU ALA TRP SER GLN SEQRES 15 A 271 ILE VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE GLY THR SEQRES 16 A 271 GLY LYS VAL ALA THR PRO GLU GLN ALA GLN GLU VAL HIS SEQRES 17 A 271 ALA LEU LEU ARG GLN TRP VAL SER GLU LYS ILE GLY ASN SEQRES 18 A 271 GLY VAL ALA THR LYS LEU ARG ILE LEU TYR GLY GLY SER SEQRES 19 A 271 VAL THR ALA GLY ASN ALA LYS THR LEU TYR MET LYS PRO SEQRES 20 A 271 ASP ILE ASN GLY PHE LEU VAL GLY GLY ALA SER LEU LYS SEQRES 21 A 271 PRO GLU PHE ARG ASP ILE ILE ASP ALA THR ARG SEQRES 1 B 271 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 271 LEU VAL PRO ARG GLY SER HIS MET SER ALA LYS PRO GLN SEQRES 3 B 271 PRO ILE VAL ALA ALA ASN TRP LYS CYS ASN GLY THR THR SEQRES 4 B 271 ALA SER ILE GLU LYS LEU VAL GLN VAL LEU ASN GLU HIS SEQRES 5 B 271 GLN ILE ASP HIS ASP VAL GLN CYS VAL VAL ALA PRO SER SEQRES 6 B 271 PHE VAL HIS ILE PRO MET VAL GLN ALA LYS LEU CYS ASN SEQRES 7 B 271 PRO LYS TYR ALA VAL SER ALA GLU ASN ALA ILE ALA LYS SEQRES 8 B 271 SER GLY ALA PHE THR GLY GLU VAL SER MET PRO ILE LEU SEQRES 9 B 271 LYS ASP LEU GLY VAL SER TRP VAL ILE LEU GLY HIS SER SEQRES 10 B 271 GLU ARG ARG THR TYR TYR GLY GLU THR ASP GLY VAL VAL SEQRES 11 B 271 ALA GLN LYS VAL ALA ASP ALA TYR ASN GLN GLY PHE MET SEQRES 12 B 271 VAL ILE ALA CYS ILE GLY GLU THR LEU GLN GLN ARG GLU SEQRES 13 B 271 ALA ASN GLN THR ALA LYS VAL VAL LEU SER GLN THR ALA SEQRES 14 B 271 ALA ILE ALA ALA LYS LEU PRO LYS GLU ALA TRP SER GLN SEQRES 15 B 271 ILE VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE GLY THR SEQRES 16 B 271 GLY LYS VAL ALA THR PRO GLU GLN ALA GLN GLU VAL HIS SEQRES 17 B 271 ALA LEU LEU ARG GLN TRP VAL SER GLU LYS ILE GLY ASN SEQRES 18 B 271 GLY VAL ALA THR LYS LEU ARG ILE LEU TYR GLY GLY SER SEQRES 19 B 271 VAL THR ALA GLY ASN ALA LYS THR LEU TYR MET LYS PRO SEQRES 20 B 271 ASP ILE ASN GLY PHE LEU VAL GLY GLY ALA SER LEU LYS SEQRES 21 B 271 PRO GLU PHE ARG ASP ILE ILE ASP ALA THR ARG HET ARS A 301 1 HET ARS B 301 1 HET NA B 302 1 HETNAM ARS ARSENIC HETNAM NA SODIUM ION FORMUL 3 ARS 2(AS) FORMUL 5 NA NA 1+ FORMUL 6 HOH *365(H2 O) HELIX 1 1 THR A 18 HIS A 32 1 15 HELIX 2 2 SER A 45 VAL A 47 5 3 HELIX 3 3 HIS A 48 LEU A 56 1 9 HELIX 4 4 SER A 80 GLY A 88 1 9 HELIX 5 5 HIS A 96 TYR A 103 1 8 HELIX 6 6 THR A 106 GLN A 120 1 15 HELIX 7 7 THR A 131 ALA A 137 1 7 HELIX 8 8 GLN A 139 ALA A 153 1 15 HELIX 9 9 LYS A 154 LEU A 155 5 2 HELIX 10 10 PRO A 156 SER A 161 5 6 HELIX 11 11 THR A 180 ILE A 199 1 20 HELIX 12 12 GLY A 200 LEU A 207 1 8 HELIX 13 13 ASN A 219 MET A 225 1 7 HELIX 14 14 GLY A 235 LYS A 240 5 6 HELIX 15 15 PRO A 241 ALA A 249 1 9 HELIX 16 16 THR B 18 GLU B 31 1 14 HELIX 17 17 SER B 45 VAL B 47 5 3 HELIX 18 18 HIS B 48 LEU B 56 1 9 HELIX 19 19 SER B 80 GLY B 88 1 9 HELIX 20 20 HIS B 96 TYR B 103 1 8 HELIX 21 21 THR B 106 GLN B 120 1 15 HELIX 22 22 THR B 131 ALA B 137 1 7 HELIX 23 23 GLN B 139 LYS B 154 1 16 HELIX 24 24 LEU B 155 SER B 161 5 7 HELIX 25 25 PRO B 169 GLY B 174 1 6 HELIX 26 26 THR B 180 ILE B 199 1 20 HELIX 27 27 GLY B 200 LEU B 207 1 8 HELIX 28 28 ASN B 219 LYS B 226 1 8 HELIX 29 29 GLY B 235 PRO B 241 5 7 HELIX 30 30 GLU B 242 ALA B 249 1 8 SHEET 1 A 9 ILE A 8 ASN A 12 0 SHEET 2 A 9 GLN A 39 ALA A 43 1 O VAL A 41 N ALA A 11 SHEET 3 A 9 TYR A 61 ALA A 65 1 O SER A 64 N VAL A 42 SHEET 4 A 9 TRP A 91 LEU A 94 1 O TRP A 91 N ALA A 65 SHEET 5 A 9 MET A 123 ILE A 128 1 O CYS A 127 N LEU A 94 SHEET 6 A 9 ILE A 163 TYR A 167 1 O VAL A 164 N ALA A 126 SHEET 7 A 9 ARG A 208 TYR A 211 1 O LEU A 210 N LEU A 165 SHEET 8 A 9 GLY A 231 VAL A 234 1 O GLY A 231 N TYR A 211 SHEET 9 A 9 ILE A 8 ASN A 12 1 N ALA A 10 O VAL A 234 SHEET 1 B 9 ILE B 8 ASN B 12 0 SHEET 2 B 9 GLN B 39 ALA B 43 1 O ALA B 43 N ALA B 11 SHEET 3 B 9 TYR B 61 ALA B 65 1 O SER B 64 N VAL B 42 SHEET 4 B 9 TRP B 91 LEU B 94 1 O TRP B 91 N ALA B 65 SHEET 5 B 9 MET B 123 ILE B 128 1 O ILE B 125 N LEU B 94 SHEET 6 B 9 ILE B 163 TYR B 167 1 O VAL B 164 N ALA B 126 SHEET 7 B 9 ARG B 208 TYR B 211 1 O LEU B 210 N LEU B 165 SHEET 8 B 9 GLY B 231 VAL B 234 1 O GLY B 231 N TYR B 211 SHEET 9 B 9 ILE B 8 ASN B 12 1 N ALA B 10 O VAL B 234 LINK OE2 GLU A 31 NA NA B 302 1555 1555 2.32 LINK O HOH A 580 NA NA B 302 1555 1555 2.15 LINK O HOH A 581 NA NA B 302 1555 1555 2.26 LINK OE2 GLU B 197 NA NA B 302 1555 1555 2.34 LINK O GLU B 197 NA NA B 302 1555 1555 2.51 LINK NA NA B 302 O HOH B 461 1555 1555 2.34 SITE 1 AC1 2 CYS A 57 GLN B 193 SITE 1 AC2 1 CYS B 57 SITE 1 AC3 5 GLU A 31 HOH A 580 HOH A 581 GLU B 197 SITE 2 AC3 5 HOH B 461 CRYST1 39.580 78.790 83.160 90.00 101.15 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025265 0.000000 0.004980 0.00000 SCALE2 0.000000 0.012692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012256 0.00000