HEADER TRANSFERASE 20-AUG-12 4GP1 TITLE CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE A3MSH1 (TARGET EFI-501992) TITLE 2 FROM PYROBACULUM CALIDIFONTIS COMPLEXED WITH DMAPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPRENYL SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM CALIDIFONTIS; SOURCE 3 ORGANISM_TAXID: 410359; SOURCE 4 STRAIN: JCM 11548/VA1; SOURCE 5 GENE: PCAL_0150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ISOPRENOID SYNTHESIS, ISOPRENOID DIPHOSPHATE SYNTHASE, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 C.D.POULTER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 13-SEP-23 4GP1 1 REMARK SEQADV REVDAT 2 24-JAN-18 4GP1 1 AUTHOR REVDAT 1 29-AUG-12 4GP1 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,C.D.POULTER,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE FROM PYROBACULUM JRNL TITL 2 CALIDIFONTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 28751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.57000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2681 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3632 ; 1.208 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 4.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;28.972 ;23.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;14.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2015 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30255 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DHD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, PH 7.5, 20% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.40300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.40300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.29900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.69650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.29900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.69650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.40300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.29900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.69650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.40300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.29900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.69650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -74.40300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 233 REMARK 465 PRO A 234 REMARK 465 LYS A 235 REMARK 465 LYS A 236 REMARK 465 PHE A 237 REMARK 465 GLY A 238 REMARK 465 LYS A 239 REMARK 465 TYR A 341 REMARK 465 PHE A 342 REMARK 465 GLN A 343 REMARK 465 SER A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 TRP A 351 REMARK 465 SER A 352 REMARK 465 HIS A 353 REMARK 465 PRO A 354 REMARK 465 GLN A 355 REMARK 465 PHE A 356 REMARK 465 GLU A 357 REMARK 465 LYS A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 230 -50.25 -125.95 REMARK 500 ALA A 333 58.50 33.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DHD RELATED DB: PDB REMARK 900 UN-LIGANDED STRUCTURE REMARK 900 RELATED ID: 4GP2 RELATED DB: PDB REMARK 900 COMPLEX WITH DMAPP AND MAGNESIUM REMARK 900 RELATED ID: EFI-501992 RELATED DB: TARGETTRACK DBREF 4GP1 A 3 336 UNP A3MSH1 A3MSH1_PYRCJ 1 334 SEQADV 4GP1 MET A 1 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 VAL A 2 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 ALA A 337 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 GLU A 338 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 ASN A 339 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 LEU A 340 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 TYR A 341 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 PHE A 342 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 GLN A 343 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 SER A 344 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 345 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 346 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 347 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 348 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 349 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 350 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 TRP A 351 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 SER A 352 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 HIS A 353 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 PRO A 354 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 GLN A 355 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 PHE A 356 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 GLU A 357 UNP A3MSH1 EXPRESSION TAG SEQADV 4GP1 LYS A 358 UNP A3MSH1 EXPRESSION TAG SEQRES 1 A 358 MET VAL MET ASP VAL VAL SER ARG LEU HIS GLN LYS TYR SEQRES 2 A 358 GLY ALA GLU VAL GLU LYS ALA LEU VAL ARG TYR LEU SER SEQRES 3 A 358 ILE GLY LEU ALA GLU ASP PHE ARG GLU ALA VAL LEU TYR SEQRES 4 A 358 GLN VAL LYS THR GLY GLY LYS ARG LEU ARG PRO LEU LEU SEQRES 5 A 358 THR LEU ALA ALA ALA GLU ALA VAL SER GLY GLN TRP ARG SEQRES 6 A 358 PRO ALA LEU PRO ALA ALA ALA ILE VAL GLU LEU ILE HIS SEQRES 7 A 358 ASN TYR SER LEU ILE TYR ASP ASP ILE ILE ASP ARG GLY SEQRES 8 A 358 ASP VAL ARG ARG GLY LEU PRO THR VAL ARG LYS ALA PHE SEQRES 9 A 358 GLY ASP ASN ALA ALA ILE LEU VAL GLY ILE TRP TYR ARG SEQRES 10 A 358 GLU ALA ILE GLU GLU ALA VAL LEU ASP THR PRO LYS PRO SEQRES 11 A 358 THR LEU PHE ALA LYS GLU VAL ALA GLU VAL ILE LYS ALA SEQRES 12 A 358 ILE ASP GLU GLY GLU ARG LEU ASP ILE LEU PHE GLU ALA SEQRES 13 A 358 ALA GLY ARG SER ASP PRO TYR PHE VAL GLN ALA ARG TRP SEQRES 14 A 358 ARG GLU VAL THR LEU ASP ASP TYR ILE LYS MET VAL SER SEQRES 15 A 358 LEU LYS THR GLY ALA LEU ILE ALA ALA ALA ALA LYS TRP SEQRES 16 A 358 GLY VAL LEU SER VAL SER ASP ASP ARG GLY LEU ALA GLU SEQRES 17 A 358 ALA ALA TRP ASN PHE GLY MET ALA ALA GLY VAL ALA PHE SEQRES 18 A 358 GLN ILE ILE ASP ASP VAL LEU ASP ILE TYR GLY ASP PRO SEQRES 19 A 358 LYS LYS PHE GLY LYS GLU ILE GLY LYS ASP ILE LYS GLU SEQRES 20 A 358 HIS LYS ARG GLY ASN ALA VAL VAL ALA VAL ALA LEU SER SEQRES 21 A 358 HIS LEU GLY GLU GLY GLU ARG ARG ARG LEU LEU GLU ILE SEQRES 22 A 358 LEU ALA ARG GLU VAL VAL GLU GLU ALA ASP VAL ARG GLU SEQRES 23 A 358 ALA VAL ALA LEU LEU ASP SER VAL GLY ALA ARG GLU GLU SEQRES 24 A 358 ALA LEU ARG LEU ALA ALA ARG TYR ARG GLU GLU ALA GLU SEQRES 25 A 358 ARG HIS LEU ALA LYS ILE PRO ASN ASN GLY THR LEU LYS SEQRES 26 A 358 GLU LEU LEU ASP PHE ILE VAL ALA ARG GLU TYR ALA GLU SEQRES 27 A 358 ASN LEU TYR PHE GLN SER HIS HIS HIS HIS HIS HIS TRP SEQRES 28 A 358 SER HIS PRO GLN PHE GLU LYS HET CL A 401 1 HET DMA A 402 14 HET PG4 A 403 13 HETNAM CL CHLORIDE ION HETNAM DMA DIMETHYLALLYL DIPHOSPHATE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 CL CL 1- FORMUL 3 DMA C5 H12 O7 P2 FORMUL 4 PG4 C8 H18 O5 FORMUL 5 HOH *292(H2 O) HELIX 1 1 ASP A 4 ILE A 27 1 24 HELIX 2 2 ALA A 30 ASP A 32 5 3 HELIX 3 3 PHE A 33 TYR A 39 1 7 HELIX 4 4 GLN A 40 LYS A 42 5 3 HELIX 5 5 ARG A 47 GLY A 62 1 16 HELIX 6 6 TRP A 64 PRO A 66 5 3 HELIX 7 7 ALA A 67 ASP A 89 1 23 HELIX 8 8 THR A 99 GLY A 105 1 7 HELIX 9 9 GLY A 105 ASP A 126 1 22 HELIX 10 10 LYS A 129 PHE A 154 1 26 HELIX 11 11 ASP A 161 ALA A 167 1 7 HELIX 12 12 THR A 173 THR A 185 1 13 HELIX 13 13 THR A 185 SER A 201 1 17 HELIX 14 14 ASP A 203 GLY A 232 1 30 HELIX 15 15 GLY A 242 GLU A 247 1 6 HELIX 16 16 ASN A 252 LEU A 262 1 11 HELIX 17 17 GLY A 263 ALA A 275 1 13 HELIX 18 18 GLU A 280 VAL A 294 1 15 HELIX 19 19 GLY A 295 ALA A 316 1 22 HELIX 20 20 ASN A 321 VAL A 332 1 12 HELIX 21 21 ALA A 333 LEU A 340 1 8 SHEET 1 A 2 VAL A 93 ARG A 94 0 SHEET 2 A 2 LEU A 97 PRO A 98 -1 O LEU A 97 N ARG A 94 SITE 1 AC1 3 GLN A 63 TRP A 64 ARG A 65 SITE 1 AC2 12 GLY A 45 LYS A 46 LEU A 48 ARG A 49 SITE 2 AC2 12 HIS A 78 ARG A 95 PHE A 221 HOH A 517 SITE 3 AC2 12 HOH A 518 HOH A 566 HOH A 573 HOH A 768 SITE 1 AC3 6 GLU A 139 LYS A 194 ARG A 204 GLU A 208 SITE 2 AC3 6 TRP A 211 HOH A 792 CRYST1 60.598 89.393 148.806 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016502 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006720 0.00000