HEADER HYDROLASE/HYDROLASE INHIBITOR 24-AUG-12 4GR8 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12 IN COMPLEX TITLE 2 WITH SELECTIVE PHOSPHINIC INHIBITOR RXP470C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 111-262); COMPND 5 SYNONYM: MME, MACROPHAGE ELASTASE, ME, HME, MATRIX METALLOPROTEINASE- COMPND 6 12, MMP-12; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HME, MMP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS POTENT SELECTIVE PHOSPHINIC INHIBITOR, METZINCIN, ZINC PROTEASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.STURA,L.VERA,F.BEAU,L.DEVEL,E.CASSAR-LAJEUNESSE,V.DIVE REVDAT 3 13-SEP-23 4GR8 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK REVDAT 2 22-MAY-13 4GR8 1 JRNL REVDAT 1 06-FEB-13 4GR8 0 JRNL AUTH B.CZARNY,E.A.STURA,L.DEVEL,L.VERA,E.CASSAR-LAJEUNESSE, JRNL AUTH 2 F.BEAU,V.CALDERONE,M.FRAGAI,C.LUCHINAT,V.DIVE JRNL TITL MOLECULAR DETERMINANTS OF A SELECTIVE MATRIX JRNL TITL 2 METALLOPROTEASE-12 INHIBITOR: INSIGHTS FROM CRYSTALLOGRAPHY JRNL TITL 3 AND THERMODYNAMIC STUDIES. JRNL REF J.MED.CHEM. V. 56 1149 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23343195 JRNL DOI 10.1021/JM301574D REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0156 - 3.0529 0.97 2688 142 0.1577 0.1789 REMARK 3 2 3.0529 - 2.4235 1.00 2635 139 0.1720 0.2091 REMARK 3 3 2.4235 - 2.1173 1.00 2593 136 0.1697 0.1913 REMARK 3 4 2.1173 - 1.9237 1.00 2598 137 0.1650 0.1970 REMARK 3 5 1.9237 - 1.7859 1.00 2569 135 0.1658 0.1999 REMARK 3 6 1.7859 - 1.6806 1.00 2547 134 0.1794 0.1830 REMARK 3 7 1.6806 - 1.5964 1.00 2554 135 0.1778 0.2067 REMARK 3 8 1.5964 - 1.5269 1.00 2556 134 0.1850 0.2034 REMARK 3 9 1.5269 - 1.4681 1.00 2553 135 0.2057 0.2421 REMARK 3 10 1.4681 - 1.4175 1.00 2540 134 0.2080 0.2395 REMARK 3 11 1.4175 - 1.3732 1.00 2526 133 0.2194 0.2398 REMARK 3 12 1.3732 - 1.3339 1.00 2546 134 0.2353 0.2661 REMARK 3 13 1.3339 - 1.2988 0.96 2411 125 0.2661 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1338 REMARK 3 ANGLE : 1.154 1824 REMARK 3 CHIRALITY : 0.077 185 REMARK 3 PLANARITY : 0.006 244 REMARK 3 DIHEDRAL : 16.521 463 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000074536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.560 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 12.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.16 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : 0.79800 REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: HMMP12 F171D 848 MICROM. REMARK 280 RESERVOIR: 24% PEG 10000, 0.2 M IMIDAZOLE MALATE PH 8.5. REMARK 280 CRYOPROTECTANT: 27% PEG 8000, 15% MONOMETHYL-PEG 550, 10% REMARK 280 GLYCEROL, 0.09 M TRIS-HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.91500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 168 29.14 -141.82 REMARK 500 HIS A 206 -163.78 -120.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 124 OD1 50.9 REMARK 620 3 GLU A 199 O 141.5 159.1 REMARK 620 4 GLU A 199 OE2 87.2 85.0 79.9 REMARK 620 5 GLU A 201 O 78.9 125.0 75.1 117.1 REMARK 620 6 HOH A 420 O 136.2 85.4 79.7 87.6 140.2 REMARK 620 7 HOH A 426 O 96.1 84.6 106.5 163.4 79.5 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 O REMARK 620 2 GLY A 190 O 173.1 REMARK 620 3 GLY A 192 O 88.2 91.1 REMARK 620 4 ASP A 194 OD1 90.5 96.4 90.6 REMARK 620 5 HOH A 408 O 82.6 90.5 84.0 171.3 REMARK 620 6 HOH A 432 O 92.4 87.2 170.3 99.1 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 ASP A 170 OD2 105.9 REMARK 620 3 HIS A 183 NE2 115.6 119.6 REMARK 620 4 HIS A 196 ND1 106.4 93.7 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD1 REMARK 620 2 GLY A 176 O 90.4 REMARK 620 3 GLY A 178 O 90.5 85.3 REMARK 620 4 ILE A 180 O 86.0 175.1 91.4 REMARK 620 5 ASP A 198 OD2 96.6 88.0 170.2 95.7 REMARK 620 6 GLU A 201 OE2 175.3 92.2 85.9 91.1 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 102.4 REMARK 620 3 HIS A 228 NE2 116.6 101.0 REMARK 620 4 R4C A 306 O3 118.4 121.1 96.7 REMARK 620 N 1 2 3 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-{(2S)-3-[(R)-(4-BROMOPHENYL)(HYDROXY)PHOSPHORYL]- REMARK 630 2-[(3-PHENYL-1,2-OXAZOL-5-YL)METHYL]PROPANOYL}-L-ALANYL-L- REMARK 630 ALANINAMID E REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 R4C A 306 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 14E ALA ALA NH2 REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R4C A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GR3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12 IN COMPLEX REMARK 900 WITH SELECTIVE PHOSPHINIC INHIBITOR RXP470A REMARK 900 RELATED ID: 4GR0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12 IN COMPLEX REMARK 900 WITH SELECTIVE PHOSPHINIC INHIBITOR RXP470B REMARK 900 RELATED ID: 4GQL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12 IN COMPLEX REMARK 900 WITH SELECTIVE PHOSPHINIC INHIBITOR RXP470.1 REMARK 900 RELATED ID: 3LIK RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH NON-ZINC CHELATING INHIBITOR REMARK 900 RELATED ID: 3LJG RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH NON-ZINC CHELATING INHIBITOR REMARK 900 RELATED ID: 3LIR RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH NON-ZINC CHELATING INHIBITOR REMARK 900 RELATED ID: 3LIL RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH NON-ZINC CHELATING INHIBITOR REMARK 900 RELATED ID: 4EFS RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH L-GLUTAMATE MOTIF INHIBITOR REMARK 900 RELATED ID: 3TSK RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH L-GLUTAMATE MOTIF INHIBITOR REMARK 900 RELATED ID: 3TS4 RELATED DB: PDB REMARK 900 HUMAN MMP12 IN COMPLEX WITH L-GLUTAMATE MOTIF INHIBITOR DBREF 4GR8 A 111 262 UNP P39900 MMP12_HUMAN 111 262 SEQADV 4GR8 ASP A 171 UNP P39900 PHE 171 ENGINEERED MUTATION SEQRES 1 A 152 LYS HIS TYR ILE THR TYR ARG ILE ASN ASN TYR THR PRO SEQRES 2 A 152 ASP MET ASN ARG GLU ASP VAL ASP TYR ALA ILE ARG LYS SEQRES 3 A 152 ALA PHE GLN VAL TRP SER ASN VAL THR PRO LEU LYS PHE SEQRES 4 A 152 SER LYS ILE ASN THR GLY MET ALA ASP ILE LEU VAL VAL SEQRES 5 A 152 PHE ALA ARG GLY ALA HIS GLY ASP ASP HIS ALA PHE ASP SEQRES 6 A 152 GLY LYS GLY GLY ILE LEU ALA HIS ALA PHE GLY PRO GLY SEQRES 7 A 152 SER GLY ILE GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU SEQRES 8 A 152 PHE TRP THR THR HIS SER GLY GLY THR ASN LEU PHE LEU SEQRES 9 A 152 THR ALA VAL HIS GLU ILE GLY HIS SER LEU GLY LEU GLY SEQRES 10 A 152 HIS SER SER ASP PRO LYS ALA VAL MET PHE PRO THR TYR SEQRES 11 A 152 LYS TYR VAL ASP ILE ASN THR PHE ARG LEU SER ALA ASP SEQRES 12 A 152 ASP ILE ARG GLY ILE GLN SER LEU TYR HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET R4C A 306 48 HET IMD A 307 5 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM R4C N-{(2S)-3-[(R)-(4-BROMOPHENYL)(HYDROXY)PHOSPHORYL]-2- HETNAM 2 R4C [(3-PHENYL-1,2-OXAZOL-5-YL)METHYL]PROPANOYL}-L-ALANYL- HETNAM 3 R4C L-ALANINAMID E HETNAM IMD IMIDAZOLE HETSYN R4C RXP470C FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 R4C C25 H28 BR N4 O6 P FORMUL 8 IMD C3 H5 N2 1+ FORMUL 9 HOH *197(H2 O) HELIX 1 1 ASN A 126 ASN A 143 1 18 HELIX 2 2 LEU A 212 LEU A 224 1 13 HELIX 3 3 ASP A 244 PHE A 248 5 5 HELIX 4 4 SER A 251 TYR A 262 1 12 SHEET 1 A 5 LYS A 148 LYS A 151 0 SHEET 2 A 5 TYR A 113 ILE A 118 1 N ILE A 114 O LYS A 148 SHEET 3 A 5 ILE A 159 ALA A 164 1 O VAL A 161 N ARG A 117 SHEET 4 A 5 ALA A 195 ASP A 198 1 O PHE A 197 N VAL A 162 SHEET 5 A 5 ALA A 182 ALA A 184 -1 N HIS A 183 O HIS A 196 SHEET 1 B 2 TRP A 203 THR A 204 0 SHEET 2 B 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 LINK OD2 ASP A 124 CA CA A 304 1555 1555 2.44 LINK OD1 ASP A 124 CA CA A 304 1555 1555 2.63 LINK O ASP A 158 CA CA A 303 1555 1555 2.36 LINK NE2 HIS A 168 ZN ZN A 302 1555 1555 2.01 LINK OD2 ASP A 170 ZN ZN A 302 1555 1555 1.93 LINK OD1 ASP A 175 CA CA A 305 1555 1555 2.34 LINK O GLY A 176 CA CA A 305 1555 1555 2.32 LINK O GLY A 178 CA CA A 305 1555 1555 2.38 LINK O ILE A 180 CA CA A 305 1555 1555 2.31 LINK NE2 HIS A 183 ZN ZN A 302 1555 1555 2.03 LINK O GLY A 190 CA CA A 303 1555 1555 2.32 LINK O GLY A 192 CA CA A 303 1555 1555 2.34 LINK OD1 ASP A 194 CA CA A 303 1555 1555 2.34 LINK ND1 HIS A 196 ZN ZN A 302 1555 1555 2.04 LINK OD2 ASP A 198 CA CA A 305 1555 1555 2.28 LINK O GLU A 199 CA CA A 304 1555 1555 2.36 LINK OE2 GLU A 199 CA CA A 304 1555 1555 2.41 LINK O GLU A 201 CA CA A 304 1555 1555 2.38 LINK OE2 GLU A 201 CA CA A 305 1555 1555 2.27 LINK NE2 HIS A 218 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 222 ZN ZN A 301 1555 1555 2.05 LINK NE2 HIS A 228 ZN ZN A 301 1555 1555 2.03 LINK ZN ZN A 301 O3 R4C A 306 1555 1555 1.92 LINK CA CA A 303 O HOH A 408 1555 1555 2.31 LINK CA CA A 303 O HOH A 432 1555 1555 2.32 LINK CA CA A 304 O HOH A 420 1555 1555 2.40 LINK CA CA A 304 O HOH A 426 1555 1555 2.38 SITE 1 AC1 4 HIS A 218 HIS A 222 HIS A 228 R4C A 306 SITE 1 AC2 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC3 6 ASP A 158 GLY A 190 GLY A 192 ASP A 194 SITE 2 AC3 6 HOH A 408 HOH A 432 SITE 1 AC4 5 ASP A 124 GLU A 199 GLU A 201 HOH A 420 SITE 2 AC4 5 HOH A 426 SITE 1 AC5 6 ASP A 175 GLY A 176 GLY A 178 ILE A 180 SITE 2 AC5 6 ASP A 198 GLU A 201 SITE 1 AC6 22 THR A 154 GLY A 179 LEU A 181 ALA A 182 SITE 2 AC6 22 HIS A 183 THR A 215 HIS A 218 GLU A 219 SITE 3 AC6 22 HIS A 222 HIS A 228 VAL A 235 PHE A 237 SITE 4 AC6 22 PRO A 238 THR A 239 TYR A 240 ZN A 301 SITE 5 AC6 22 IMD A 307 HOH A 407 HOH A 409 HOH A 423 SITE 6 AC6 22 HOH A 528 HOH A 532 SITE 1 AC7 5 HIS A 172 HIS A 183 ALA A 184 PHE A 185 SITE 2 AC7 5 R4C A 306 CRYST1 67.830 61.470 33.460 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029886 0.00000