HEADER TRANSFERASE 28-AUG-12 4GSU
TITLE STRUCTURAL BASIS FOR THE INHIBITION OF MYCOBACTERIUM TUBERCULOSIS L,D-
TITLE 2 TRANSPEPTIDASE BY MEROPENEM, A DRUG EFFECTIVE AGAINST EXTENSIVELY
TITLE 3 DRUG-RESISTANT STRAINS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROBABLE CONSERVED LIPOPROTEIN LPPS;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 131-408;
COMPND 5 SYNONYM: LDTMT2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS;
SOURCE 3 ORGANISM_TAXID: 1773;
SOURCE 4 GENE: LPPS;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS L, D-TRANSPEPTIDASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.S.KIM,J.KIM,H.N.IM,J.Y.YOON,D.R.AN,H.J.YOON,J.Y.KIM,H.K.MIN,S.-
AUTHOR 2 J.KIM,J.Y.LEE,B.W.HAN,S.W.SUH
REVDAT 4 06-NOV-24 4GSU 1 REMARK
REVDAT 3 09-FEB-22 4GSU 1 COMPND REMARK SEQADV HETNAM
REVDAT 3 2 1 HETSYN LINK
REVDAT 2 07-AUG-13 4GSU 1 JRNL
REVDAT 1 27-FEB-13 4GSU 0
JRNL AUTH H.S.KIM,J.KIM,H.N.IM,J.Y.YOON,D.R.AN,H.J.YOON,J.Y.KIM,
JRNL AUTH 2 H.K.MIN,S.-J.KIM,J.Y.LEE,B.W.HAN,S.W.SUH
JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF MYCOBACTERIUM
JRNL TITL 2 TUBERCULOSIS L,D-TRANSPEPTIDASE BY MEROPENEM, A DRUG
JRNL TITL 3 EFFECTIVE AGAINST EXTENSIVELY DRUG-RESISTANT STRAINS
JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 420 2013
JRNL REFN ISSN 0907-4449
JRNL PMID 23519417
JRNL DOI 10.1107/S0907444912048998
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4
REMARK 3 NUMBER OF REFLECTIONS : 32907
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.189
REMARK 3 R VALUE (WORKING SET) : 0.186
REMARK 3 FREE R VALUE : 0.232
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1733
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2098
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.78
REMARK 3 BIN R VALUE (WORKING SET) : 0.2190
REMARK 3 BIN FREE R VALUE SET COUNT : 94
REMARK 3 BIN FREE R VALUE : 0.2760
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4112
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 52
REMARK 3 SOLVENT ATOMS : 228
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.89000
REMARK 3 B22 (A**2) : -1.91000
REMARK 3 B33 (A**2) : 0.02000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.206
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.012
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4282 ; 0.010 ; 0.020
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5864 ; 1.395 ; 1.929
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 5.919 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;31.830 ;24.433
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;14.967 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.646 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.090 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3352 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN
REMARK 3 THE INPUT
REMARK 4
REMARK 4 4GSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-12.
REMARK 100 THE DEPOSITION ID IS D_1000074589.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-DEC-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : BL-1A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34693
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.300
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03
REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: AUTOSOL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.57
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 50.2MM MEROPENEM, 200MM LITHIUM
REMARK 280 CHLORIDE, 20%(W/V) POLYETHYLENE GLYCOL 3350, PH 7.5, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 296K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.46850
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.03550
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.71650
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.03550
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.46850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.71650
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 130
REMARK 465 LEU A 131
REMARK 465 GLY A 132
REMARK 465 LEU A 133
REMARK 465 GLY A 134
REMARK 465 GLY A 135
REMARK 465 ALA A 136
REMARK 465 ALA A 137
REMARK 465 THR A 138
REMARK 465 ARG A 139
REMARK 465 GLN A 140
REMARK 465 LEU A 409
REMARK 465 GLU A 410
REMARK 465 HIS A 411
REMARK 465 HIS A 412
REMARK 465 HIS A 413
REMARK 465 HIS A 414
REMARK 465 HIS A 415
REMARK 465 HIS A 416
REMARK 465 MET B 130
REMARK 465 LEU B 131
REMARK 465 GLY B 132
REMARK 465 LEU B 133
REMARK 465 GLY B 134
REMARK 465 GLY B 135
REMARK 465 ALA B 136
REMARK 465 ALA B 137
REMARK 465 THR B 138
REMARK 465 ARG B 139
REMARK 465 GLN B 140
REMARK 465 LEU B 409
REMARK 465 GLU B 410
REMARK 465 HIS B 411
REMARK 465 HIS B 412
REMARK 465 HIS B 413
REMARK 465 HIS B 414
REMARK 465 HIS B 415
REMARK 465 HIS B 416
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 MET A 280 -163.63 -106.79
REMARK 500 HIS A 347 -48.03 -135.03
REMARK 500 ASN A 405 36.52 -152.26
REMARK 500 TYR B 229 109.30 -54.56
REMARK 500 MET B 280 -168.08 -108.23
REMARK 500 SER B 306 15.41 -68.87
REMARK 500 HIS B 347 -50.68 -133.40
REMARK 500 ASN B 405 42.08 -153.64
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 ARG A 319 -10.02
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DWZ A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DWZ B 501
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4GSQ RELATED DB: PDB
REMARK 900 RELATED ID: 4GSR RELATED DB: PDB
DBREF 4GSU A 131 408 UNP O53223 O53223_MYCTU 131 408
DBREF 4GSU B 131 408 UNP O53223 O53223_MYCTU 131 408
SEQADV 4GSU MET A 130 UNP O53223 EXPRESSION TAG
SEQADV 4GSU LEU A 409 UNP O53223 EXPRESSION TAG
SEQADV 4GSU GLU A 410 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS A 411 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS A 412 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS A 413 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS A 414 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS A 415 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS A 416 UNP O53223 EXPRESSION TAG
SEQADV 4GSU MET B 130 UNP O53223 EXPRESSION TAG
SEQADV 4GSU LEU B 409 UNP O53223 EXPRESSION TAG
SEQADV 4GSU GLU B 410 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS B 411 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS B 412 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS B 413 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS B 414 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS B 415 UNP O53223 EXPRESSION TAG
SEQADV 4GSU HIS B 416 UNP O53223 EXPRESSION TAG
SEQRES 1 A 287 MET LEU GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR
SEQRES 2 A 287 PHE GLN THR SER SER PRO ALA HIS LEU THR MET PRO TYR
SEQRES 3 A 287 VAL MET PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU
SEQRES 4 A 287 PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG
SEQRES 5 A 287 GLY ALA ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO
SEQRES 6 A 287 PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU
SEQRES 7 A 287 VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR
SEQRES 8 A 287 ALA VAL ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU
SEQRES 9 A 287 GLY GLU GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS
SEQRES 10 A 287 PHE THR ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP
SEQRES 11 A 287 ASN THR LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL
SEQRES 12 A 287 VAL LYS SER MET PRO THR SER MET GLY LYS ASP SER THR
SEQRES 13 A 287 PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR
SEQRES 14 A 287 LYS HIS ILE ILE MET ASP SER SER THR TYR GLY VAL PRO
SEQRES 15 A 287 VAL ASN SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP
SEQRES 16 A 287 ALA THR GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER
SEQRES 17 A 287 ALA PRO TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR
SEQRES 18 A 287 SER HIS GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN
SEQRES 19 A 287 TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU
SEQRES 20 A 287 VAL VAL ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP
SEQRES 21 A 287 GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG
SEQRES 22 A 287 ALA GLY ASN ALA LYS ALA LEU GLU HIS HIS HIS HIS HIS
SEQRES 23 A 287 HIS
SEQRES 1 B 287 MET LEU GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR
SEQRES 2 B 287 PHE GLN THR SER SER PRO ALA HIS LEU THR MET PRO TYR
SEQRES 3 B 287 VAL MET PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU
SEQRES 4 B 287 PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG
SEQRES 5 B 287 GLY ALA ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO
SEQRES 6 B 287 PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU
SEQRES 7 B 287 VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR
SEQRES 8 B 287 ALA VAL ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU
SEQRES 9 B 287 GLY GLU GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS
SEQRES 10 B 287 PHE THR ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP
SEQRES 11 B 287 ASN THR LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL
SEQRES 12 B 287 VAL LYS SER MET PRO THR SER MET GLY LYS ASP SER THR
SEQRES 13 B 287 PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR
SEQRES 14 B 287 LYS HIS ILE ILE MET ASP SER SER THR TYR GLY VAL PRO
SEQRES 15 B 287 VAL ASN SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP
SEQRES 16 B 287 ALA THR GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER
SEQRES 17 B 287 ALA PRO TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR
SEQRES 18 B 287 SER HIS GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN
SEQRES 19 B 287 TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU
SEQRES 20 B 287 VAL VAL ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP
SEQRES 21 B 287 GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG
SEQRES 22 B 287 ALA GLY ASN ALA LYS ALA LEU GLU HIS HIS HIS HIS HIS
SEQRES 23 B 287 HIS
HET DWZ A 501 26
HET DWZ B 501 26
HETNAM DWZ (2S,3R,4S)-4-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-
HETNAM 2 DWZ 3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-
HETNAM 3 DWZ 3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID
HETSYN DWZ MEROPENEM, BOUND FORM
FORMUL 3 DWZ 2(C17 H27 N3 O5 S)
FORMUL 5 HOH *228(H2 O)
HELIX 1 1 ASP A 180 ALA A 187 1 8
HELIX 2 2 SER A 306 GLY A 309 5 4
HELIX 3 3 PRO A 339 VAL A 342 5 4
HELIX 4 4 SER A 358 VAL A 369 1 12
HELIX 5 5 GLY A 392 ILE A 396 5 5
HELIX 6 6 PRO A 397 GLY A 404 1 8
HELIX 7 7 ASP B 180 ALA B 187 1 8
HELIX 8 8 SER B 306 TYR B 308 5 3
HELIX 9 9 PRO B 339 VAL B 342 5 4
HELIX 10 10 SER B 358 VAL B 369 1 12
HELIX 11 11 GLY B 392 ILE B 396 5 5
HELIX 12 12 PRO B 397 GLY B 404 1 8
SHEET 1 A 2 LEU A 151 THR A 152 0
SHEET 2 A 2 PHE A 238 GLY A 239 1 O PHE A 238 N THR A 152
SHEET 1 B 4 PRO A 154 MET A 157 0
SHEET 2 B 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155
SHEET 3 B 4 GLU A 207 PRO A 212 -1 O VAL A 208 N ILE A 172
SHEET 4 B 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209
SHEET 1 C 4 VAL A 163 VAL A 164 0
SHEET 2 C 4 ASN A 242 ILE A 249 1 O THR A 248 N VAL A 164
SHEET 3 C 4 ALA A 221 ASN A 227 -1 N VAL A 226 O VAL A 243
SHEET 4 C 4 ILE A 188 ASN A 193 -1 N ASN A 193 O ALA A 221
SHEET 1 D 5 GLU A 271 PRO A 277 0
SHEET 2 D 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276
SHEET 3 D 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265
SHEET 4 D 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 255
SHEET 5 D 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375
SHEET 1 E 5 LEU A 355 VAL A 357 0
SHEET 2 E 5 PHE A 334 SER A 337 1 N HIS A 336 O VAL A 357
SHEET 3 E 5 ARG A 319 GLN A 327 -1 N THR A 326 O VAL A 335
SHEET 4 E 5 ARG A 297 ASP A 304 -1 N TYR A 298 O ALA A 325
SHEET 5 E 5 GLN B 144 THR B 145 1 O GLN B 144 N ILE A 302
SHEET 1 F 4 PRO B 154 MET B 157 0
SHEET 2 F 4 VAL B 170 PHE B 174 -1 O ALA B 171 N MET B 157
SHEET 3 F 4 GLU B 207 PRO B 212 -1 O VAL B 208 N ILE B 172
SHEET 4 F 4 GLY B 198 ASN B 204 -1 N TYR B 201 O ARG B 209
SHEET 1 G 4 GLU B 162 VAL B 164 0
SHEET 2 G 4 ASN B 242 ILE B 249 1 O THR B 248 N VAL B 164
SHEET 3 G 4 ALA B 221 ASN B 227 -1 N VAL B 226 O VAL B 243
SHEET 4 G 4 ILE B 188 ASN B 193 -1 N LYS B 189 O ALA B 225
SHEET 1 H 5 GLU B 271 PRO B 277 0
SHEET 2 H 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276
SHEET 3 H 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265
SHEET 4 H 5 ILE B 374 VAL B 378 1 O GLU B 376 N ALA B 255
SHEET 5 H 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375
SHEET 1 I 4 ARG B 297 ASP B 304 0
SHEET 2 I 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303
SHEET 3 I 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326
SHEET 4 I 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334
LINK SG CYS A 354 CAA DWZ A 501 1555 1555 2.22
CISPEP 1 MET A 157 PRO A 158 0 -1.39
CISPEP 2 ASN A 193 PRO A 194 0 -1.33
CISPEP 3 MET B 157 PRO B 158 0 1.81
CISPEP 4 ASN B 193 PRO B 194 0 -2.95
SITE 1 AC1 9 MET A 303 TYR A 308 TYR A 318 VAL A 333
SITE 2 AC1 9 HIS A 352 GLY A 353 CYS A 354 HOH A 692
SITE 3 AC1 9 HOH A 695
SITE 1 AC2 8 THR A 145 MET B 303 TYR B 308 TYR B 318
SITE 2 AC2 8 GLY B 332 HIS B 352 GLY B 353 CYS B 354
CRYST1 68.937 73.433 104.071 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014506 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013618 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009609 0.00000