HEADER TRANSFERASE 28-AUG-12 4GSU TITLE STRUCTURAL BASIS FOR THE INHIBITION OF MYCOBACTERIUM TUBERCULOSIS L,D- TITLE 2 TRANSPEPTIDASE BY MEROPENEM, A DRUG EFFECTIVE AGAINST EXTENSIVELY TITLE 3 DRUG-RESISTANT STRAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CONSERVED LIPOPROTEIN LPPS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 131-408; COMPND 5 SYNONYM: LDTMT2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: LPPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L, D-TRANSPEPTIDASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.S.KIM,J.KIM,H.N.IM,J.Y.YOON,D.R.AN,H.J.YOON,J.Y.KIM,H.K.MIN,S.- AUTHOR 2 J.KIM,J.Y.LEE,B.W.HAN,S.W.SUH REVDAT 4 06-NOV-24 4GSU 1 REMARK REVDAT 3 09-FEB-22 4GSU 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 HETSYN LINK REVDAT 2 07-AUG-13 4GSU 1 JRNL REVDAT 1 27-FEB-13 4GSU 0 JRNL AUTH H.S.KIM,J.KIM,H.N.IM,J.Y.YOON,D.R.AN,H.J.YOON,J.Y.KIM, JRNL AUTH 2 H.K.MIN,S.-J.KIM,J.Y.LEE,B.W.HAN,S.W.SUH JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS L,D-TRANSPEPTIDASE BY MEROPENEM, A DRUG JRNL TITL 3 EFFECTIVE AGAINST EXTENSIVELY DRUG-RESISTANT STRAINS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 420 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519417 JRNL DOI 10.1107/S0907444912048998 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 32907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2098 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.89000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4282 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5864 ; 1.395 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 5.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;31.830 ;24.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;14.967 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3352 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50.2MM MEROPENEM, 200MM LITHIUM REMARK 280 CHLORIDE, 20%(W/V) POLYETHYLENE GLYCOL 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.46850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.03550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.71650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.03550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.46850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.71650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 130 REMARK 465 LEU A 131 REMARK 465 GLY A 132 REMARK 465 LEU A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 ALA A 137 REMARK 465 THR A 138 REMARK 465 ARG A 139 REMARK 465 GLN A 140 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 MET B 130 REMARK 465 LEU B 131 REMARK 465 GLY B 132 REMARK 465 LEU B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 ALA B 137 REMARK 465 THR B 138 REMARK 465 ARG B 139 REMARK 465 GLN B 140 REMARK 465 LEU B 409 REMARK 465 GLU B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 465 HIS B 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 280 -163.63 -106.79 REMARK 500 HIS A 347 -48.03 -135.03 REMARK 500 ASN A 405 36.52 -152.26 REMARK 500 TYR B 229 109.30 -54.56 REMARK 500 MET B 280 -168.08 -108.23 REMARK 500 SER B 306 15.41 -68.87 REMARK 500 HIS B 347 -50.68 -133.40 REMARK 500 ASN B 405 42.08 -153.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 319 -10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DWZ A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DWZ B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GSQ RELATED DB: PDB REMARK 900 RELATED ID: 4GSR RELATED DB: PDB DBREF 4GSU A 131 408 UNP O53223 O53223_MYCTU 131 408 DBREF 4GSU B 131 408 UNP O53223 O53223_MYCTU 131 408 SEQADV 4GSU MET A 130 UNP O53223 EXPRESSION TAG SEQADV 4GSU LEU A 409 UNP O53223 EXPRESSION TAG SEQADV 4GSU GLU A 410 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS A 411 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS A 412 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS A 413 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS A 414 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS A 415 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS A 416 UNP O53223 EXPRESSION TAG SEQADV 4GSU MET B 130 UNP O53223 EXPRESSION TAG SEQADV 4GSU LEU B 409 UNP O53223 EXPRESSION TAG SEQADV 4GSU GLU B 410 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS B 411 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS B 412 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS B 413 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS B 414 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS B 415 UNP O53223 EXPRESSION TAG SEQADV 4GSU HIS B 416 UNP O53223 EXPRESSION TAG SEQRES 1 A 287 MET LEU GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR SEQRES 2 A 287 PHE GLN THR SER SER PRO ALA HIS LEU THR MET PRO TYR SEQRES 3 A 287 VAL MET PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU SEQRES 4 A 287 PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG SEQRES 5 A 287 GLY ALA ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO SEQRES 6 A 287 PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU SEQRES 7 A 287 VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR SEQRES 8 A 287 ALA VAL ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU SEQRES 9 A 287 GLY GLU GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS SEQRES 10 A 287 PHE THR ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP SEQRES 11 A 287 ASN THR LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL SEQRES 12 A 287 VAL LYS SER MET PRO THR SER MET GLY LYS ASP SER THR SEQRES 13 A 287 PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR SEQRES 14 A 287 LYS HIS ILE ILE MET ASP SER SER THR TYR GLY VAL PRO SEQRES 15 A 287 VAL ASN SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP SEQRES 16 A 287 ALA THR GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER SEQRES 17 A 287 ALA PRO TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SEQRES 18 A 287 SER HIS GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN SEQRES 19 A 287 TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU SEQRES 20 A 287 VAL VAL ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP SEQRES 21 A 287 GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG SEQRES 22 A 287 ALA GLY ASN ALA LYS ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 23 A 287 HIS SEQRES 1 B 287 MET LEU GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR SEQRES 2 B 287 PHE GLN THR SER SER PRO ALA HIS LEU THR MET PRO TYR SEQRES 3 B 287 VAL MET PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU SEQRES 4 B 287 PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG SEQRES 5 B 287 GLY ALA ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO SEQRES 6 B 287 PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU SEQRES 7 B 287 VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR SEQRES 8 B 287 ALA VAL ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU SEQRES 9 B 287 GLY GLU GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS SEQRES 10 B 287 PHE THR ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP SEQRES 11 B 287 ASN THR LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL SEQRES 12 B 287 VAL LYS SER MET PRO THR SER MET GLY LYS ASP SER THR SEQRES 13 B 287 PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR SEQRES 14 B 287 LYS HIS ILE ILE MET ASP SER SER THR TYR GLY VAL PRO SEQRES 15 B 287 VAL ASN SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP SEQRES 16 B 287 ALA THR GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER SEQRES 17 B 287 ALA PRO TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SEQRES 18 B 287 SER HIS GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN SEQRES 19 B 287 TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU SEQRES 20 B 287 VAL VAL ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP SEQRES 21 B 287 GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG SEQRES 22 B 287 ALA GLY ASN ALA LYS ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 23 B 287 HIS HET DWZ A 501 26 HET DWZ B 501 26 HETNAM DWZ (2S,3R,4S)-4-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN- HETNAM 2 DWZ 3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]- HETNAM 3 DWZ 3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID HETSYN DWZ MEROPENEM, BOUND FORM FORMUL 3 DWZ 2(C17 H27 N3 O5 S) FORMUL 5 HOH *228(H2 O) HELIX 1 1 ASP A 180 ALA A 187 1 8 HELIX 2 2 SER A 306 GLY A 309 5 4 HELIX 3 3 PRO A 339 VAL A 342 5 4 HELIX 4 4 SER A 358 VAL A 369 1 12 HELIX 5 5 GLY A 392 ILE A 396 5 5 HELIX 6 6 PRO A 397 GLY A 404 1 8 HELIX 7 7 ASP B 180 ALA B 187 1 8 HELIX 8 8 SER B 306 TYR B 308 5 3 HELIX 9 9 PRO B 339 VAL B 342 5 4 HELIX 10 10 SER B 358 VAL B 369 1 12 HELIX 11 11 GLY B 392 ILE B 396 5 5 HELIX 12 12 PRO B 397 GLY B 404 1 8 SHEET 1 A 2 LEU A 151 THR A 152 0 SHEET 2 A 2 PHE A 238 GLY A 239 1 O PHE A 238 N THR A 152 SHEET 1 B 4 PRO A 154 MET A 157 0 SHEET 2 B 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 B 4 GLU A 207 PRO A 212 -1 O VAL A 208 N ILE A 172 SHEET 4 B 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 C 4 VAL A 163 VAL A 164 0 SHEET 2 C 4 ASN A 242 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 C 4 ALA A 221 ASN A 227 -1 N VAL A 226 O VAL A 243 SHEET 4 C 4 ILE A 188 ASN A 193 -1 N ASN A 193 O ALA A 221 SHEET 1 D 5 GLU A 271 PRO A 277 0 SHEET 2 D 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 D 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 D 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 255 SHEET 5 D 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 E 5 LEU A 355 VAL A 357 0 SHEET 2 E 5 PHE A 334 SER A 337 1 N HIS A 336 O VAL A 357 SHEET 3 E 5 ARG A 319 GLN A 327 -1 N THR A 326 O VAL A 335 SHEET 4 E 5 ARG A 297 ASP A 304 -1 N TYR A 298 O ALA A 325 SHEET 5 E 5 GLN B 144 THR B 145 1 O GLN B 144 N ILE A 302 SHEET 1 F 4 PRO B 154 MET B 157 0 SHEET 2 F 4 VAL B 170 PHE B 174 -1 O ALA B 171 N MET B 157 SHEET 3 F 4 GLU B 207 PRO B 212 -1 O VAL B 208 N ILE B 172 SHEET 4 F 4 GLY B 198 ASN B 204 -1 N TYR B 201 O ARG B 209 SHEET 1 G 4 GLU B 162 VAL B 164 0 SHEET 2 G 4 ASN B 242 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 G 4 ALA B 221 ASN B 227 -1 N VAL B 226 O VAL B 243 SHEET 4 G 4 ILE B 188 ASN B 193 -1 N LYS B 189 O ALA B 225 SHEET 1 H 5 GLU B 271 PRO B 277 0 SHEET 2 H 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 H 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 H 5 ILE B 374 VAL B 378 1 O GLU B 376 N ALA B 255 SHEET 5 H 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 I 4 ARG B 297 ASP B 304 0 SHEET 2 I 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303 SHEET 3 I 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 I 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK SG CYS A 354 CAA DWZ A 501 1555 1555 2.22 CISPEP 1 MET A 157 PRO A 158 0 -1.39 CISPEP 2 ASN A 193 PRO A 194 0 -1.33 CISPEP 3 MET B 157 PRO B 158 0 1.81 CISPEP 4 ASN B 193 PRO B 194 0 -2.95 SITE 1 AC1 9 MET A 303 TYR A 308 TYR A 318 VAL A 333 SITE 2 AC1 9 HIS A 352 GLY A 353 CYS A 354 HOH A 692 SITE 3 AC1 9 HOH A 695 SITE 1 AC2 8 THR A 145 MET B 303 TYR B 308 TYR B 318 SITE 2 AC2 8 GLY B 332 HIS B 352 GLY B 353 CYS B 354 CRYST1 68.937 73.433 104.071 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009609 0.00000