HEADER TRANSFERASE 28-AUG-12 4GTF
TITLE T. MARITIMA FDTS (H53A MUTANT) WITH FAD, DUMP AND FOLATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: TS, TSASE;
COMPND 5 EC: 2.1.1.148;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA;
SOURCE 3 ORGANISM_TAXID: 243274;
SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099;
SOURCE 5 GENE: THYX, THY1, TM_0449;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE, TM0449, H53A MUTANT, FAD, 5,
KEYWDS 2 10-METHYLENETETRAHYDROFOLATE, DUMP, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR I.I.MATHEWS,S.A.LESLEY,A.KOHEN
REVDAT 2 13-SEP-23 4GTF 1 REMARK SEQADV
REVDAT 1 17-OCT-12 4GTF 0
JRNL AUTH E.M.KOEHN,L.L.PERISSINOTTI,S.MOGHRAM,A.PRABHAKAR,S.A.LESLEY,
JRNL AUTH 2 I.I.MATHEWS,A.KOHEN
JRNL TITL FOLATE BINDING SITE OF FLAVIN-DEPENDENT THYMIDYLATE
JRNL TITL 2 SYNTHASE.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 15722 2012
JRNL REFN ISSN 0027-8424
JRNL PMID 23019356
JRNL DOI 10.1073/PNAS.1206077109
REMARK 2
REMARK 2 RESOLUTION. 1.77 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0110
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.82
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 34764
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.163
REMARK 3 R VALUE (WORKING SET) : 0.162
REMARK 3 FREE R VALUE : 0.178
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1830
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2334
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88
REMARK 3 BIN R VALUE (WORKING SET) : 0.2200
REMARK 3 BIN FREE R VALUE SET COUNT : 109
REMARK 3 BIN FREE R VALUE : 0.2300
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1782
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 98
REMARK 3 SOLVENT ATOMS : 124
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.24
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.71000
REMARK 3 B22 (A**2) : -0.71000
REMARK 3 B33 (A**2) : 1.42000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.082
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.040
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2022 ; 0.013 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1401 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2754 ; 1.723 ; 2.008
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3366 ; 0.934 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.038 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;32.525 ;22.062
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;13.912 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.413 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.123 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2173 ; 0.009 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 467 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 0.862 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 443 ; 0.255 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1817 ; 1.675 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 901 ; 2.574 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 4.155 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 33
REMARK 3 ORIGIN FOR THE GROUP (A): -46.7731 2.8325 11.8606
REMARK 3 T TENSOR
REMARK 3 T11: 0.1303 T22: 0.2026
REMARK 3 T33: 0.0271 T12: 0.0209
REMARK 3 T13: 0.0286 T23: 0.0461
REMARK 3 L TENSOR
REMARK 3 L11: 2.5722 L22: 3.0277
REMARK 3 L33: 0.4795 L12: -2.6407
REMARK 3 L13: 0.1417 L23: 0.0117
REMARK 3 S TENSOR
REMARK 3 S11: 0.3635 S12: 0.5065 S13: 0.0992
REMARK 3 S21: -0.4981 S22: -0.3588 S23: -0.0766
REMARK 3 S31: -0.0550 S32: 0.0235 S33: -0.0047
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 36 A 215
REMARK 3 ORIGIN FOR THE GROUP (A): -37.5044 -6.0279 21.4773
REMARK 3 T TENSOR
REMARK 3 T11: 0.0274 T22: 0.0609
REMARK 3 T33: 0.0370 T12: -0.0043
REMARK 3 T13: 0.0192 T23: 0.0039
REMARK 3 L TENSOR
REMARK 3 L11: 1.4870 L22: 2.5700
REMARK 3 L33: 0.8959 L12: -0.9493
REMARK 3 L13: 0.1468 L23: -0.3263
REMARK 3 S TENSOR
REMARK 3 S11: 0.0766 S12: 0.1730 S13: 0.1491
REMARK 3 S21: -0.1200 S22: -0.0857 S23: -0.2884
REMARK 3 S31: -0.0284 S32: 0.1192 S33: 0.0091
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4GTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-12.
REMARK 100 THE DEPOSITION ID IS D_1000074610.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-FEB-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.58
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL9-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9809
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36610
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770
REMARK 200 RESOLUTION RANGE LOW (A) : 40.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 9.100
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 9.20
REMARK 200 R MERGE FOR SHELL (I) : 0.96900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB CODE: 1O26
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.38
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 3-6% PEG 4K (W/V), 200MM NACL, 100 MM
REMARK 280 NA/K PHOSPHATE (PH 6.58), VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 3555 -Y,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X,Z+3/4
REMARK 290 5555 -X+1/2,Y,-Z+3/4
REMARK 290 6555 X,-Y+1/2,-Z+1/4
REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2
REMARK 290 8555 -Y,-X,-Z
REMARK 290 9555 X+1/2,Y+1/2,Z+1/2
REMARK 290 10555 -X,-Y,Z
REMARK 290 11555 -Y+1/2,X,Z+3/4
REMARK 290 12555 Y,-X+1/2,Z+1/4
REMARK 290 13555 -X,Y+1/2,-Z+1/4
REMARK 290 14555 X+1/2,-Y,-Z+3/4
REMARK 290 15555 Y,X,-Z
REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.90500
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.14500
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.57250
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.90500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.71750
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.71750
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.90500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.57250
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 54.90500
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.14500
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.90500
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.14500
REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.90500
REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 91.71750
REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 30.57250
REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.90500
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 30.57250
REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 91.71750
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.90500
REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.90500
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 61.14500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 14980 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 33640 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -54.90500
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 54.90500
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.14500
REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -109.81000
REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 -54.90500
REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -54.90500
REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 61.14500
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -11
REMARK 465 GLY A -10
REMARK 465 SER A -9
REMARK 465 ASP A -8
REMARK 465 LYS A -7
REMARK 465 ILE A -6
REMARK 465 HIS A -5
REMARK 465 HIS A -4
REMARK 465 HIS A -3
REMARK 465 HIS A -2
REMARK 465 HIS A -1
REMARK 465 HIS A 0
REMARK 465 GLY A 34
REMARK 465 LEU A 35
REMARK 465 LYS A 216
REMARK 465 GLU A 217
REMARK 465 VAL A 218
REMARK 465 GLN A 219
REMARK 465 VAL A 220
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 6 -146.57 56.54
REMARK 500 ALA A 82 172.48 179.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 MEF A 303
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEF A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304
DBREF 4GTF A 1 220 UNP Q9WYT0 THYX_THEMA 1 220
SEQADV 4GTF MET A -11 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF GLY A -10 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF SER A -9 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF ASP A -8 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF LYS A -7 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF ILE A -6 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF HIS A -5 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF HIS A -4 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF HIS A -3 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF HIS A -2 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF HIS A -1 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF HIS A 0 UNP Q9WYT0 EXPRESSION TAG
SEQADV 4GTF ALA A 53 UNP Q9WYT0 HIS 53 ENGINEERED MUTATION
SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET
SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL
SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA
SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG
SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY ALA
SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL
SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS
SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER
SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG
SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL
SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG
SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU
SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG
SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE
SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE
SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU
SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA
SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL
HET FAD A 301 53
HET UMP A 302 20
HET MEF A 303 24
HET CL A 304 1
HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE
HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE
HETNAM MEF N-({4-[(6AR)-3-AMINO-1-OXO-1,2,5,6,6A,7-
HETNAM 2 MEF HEXAHYDROIMIDAZO[1,5-F]PTERIDIN-8(9H)-
HETNAM 3 MEF YL]PHENYL}CARBONYL)-L-GLUTAMIC ACID
HETNAM CL CHLORIDE ION
HETSYN UMP DUMP
HETSYN MEF 5,10-METHYLENE,5,6,7,8-TETRAHYDROFOLATE
FORMUL 2 FAD C27 H33 N9 O15 P2
FORMUL 3 UMP C9 H13 N2 O8 P
FORMUL 4 MEF C20 H23 N7 O6
FORMUL 5 CL CL 1-
FORMUL 6 HOH *124(H2 O)
HELIX 1 1 ASN A 19 ARG A 28 1 10
HELIX 2 2 VAL A 29 ASP A 32 5 4
HELIX 3 3 ASP A 37 HIS A 51 1 15
HELIX 4 4 GLU A 54 HIS A 59 5 6
HELIX 5 5 ILE A 70 PHE A 77 1 8
HELIX 6 6 SER A 102 GLU A 107 5 6
HELIX 7 7 PRO A 114 SER A 139 1 26
HELIX 8 8 PRO A 142 ARG A 147 1 6
HELIX 9 9 ILE A 148 LEU A 150 5 3
HELIX 10 10 ALA A 164 ALA A 175 1 12
HELIX 11 11 GLN A 180 CYS A 198 1 19
HELIX 12 12 CYS A 198 ALA A 209 1 12
SHEET 1 A 5 LYS A 2 ILE A 5 0
SHEET 2 A 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3
SHEET 3 A 5 VAL A 61 PRO A 69 -1 O VAL A 61 N MET A 17
SHEET 4 A 5 TYR A 155 ASN A 163 -1 O TRP A 160 N PHE A 64
SHEET 5 A 5 SER A 83 GLU A 86 -1 N ASN A 85 O PHE A 159
SITE 1 AC1 28 SER A 30 THR A 55 GLU A 58 ARG A 78
SITE 2 AC1 28 HIS A 79 ARG A 80 ILE A 81 ASN A 85
SITE 3 AC1 28 GLU A 86 SER A 88 TYR A 91 ASN A 163
SITE 4 AC1 28 ARG A 165 ASN A 169 LEU A 173 ARG A 174
SITE 5 AC1 28 HIS A 178 UMP A 302 MEF A 303 HOH A 406
SITE 6 AC1 28 HOH A 431 HOH A 433 HOH A 434 HOH A 435
SITE 7 AC1 28 HOH A 447 HOH A 481 HOH A 501 HOH A 513
SITE 1 AC2 14 ARG A 74 GLN A 75 ARG A 78 GLU A 86
SITE 2 AC2 14 LEU A 87 SER A 88 GLY A 89 ARG A 90
SITE 3 AC2 14 ARG A 147 ARG A 174 FAD A 301 HOH A 402
SITE 4 AC2 14 HOH A 405 HOH A 422
SITE 1 AC3 15 ALA A 27 ARG A 28 SER A 30 PHE A 31
SITE 2 AC3 15 LEU A 44 LEU A 48 ALA A 53 THR A 55
SITE 3 AC3 15 ASN A 85 TYR A 91 LEU A 173 FAD A 301
SITE 4 AC3 15 HOH A 411 HOH A 435 HOH A 507
SITE 1 AC4 1 TYR A 96
CRYST1 109.810 109.810 122.290 90.00 90.00 90.00 I 41 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009107 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009107 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008177 0.00000