HEADER RNA BINDING PROTEIN/RNA 30-AUG-12 4GV3 TITLE STRUCTURES OF LASSA AND TACARIBE VIRAL NUCLEOPROTEINS WITH OR WITHOUT TITLE 2 5 TRIPHOSPHATE DSRNA SUBSTRATE REVEAL A UNIQUE 3 -5 EXORIBONUCLEASE TITLE 3 MECHANISM TO SUPPRESS TYPE I INTERFERON PRODUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(GTP)P*GP*GP*C)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(P*CP*GP*CP*CP*C)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NUCLEOPROTEIN; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: UNP RESIDUES 364-569; COMPND 13 SYNONYM: NUCLEOCAPSID PROTEIN, PROTEIN N; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: LASSA VIRUS; SOURCE 7 ORGANISM_COMMON: LASV; SOURCE 8 ORGANISM_TAXID: 11622; SOURCE 9 STRAIN: JOSIAH; SOURCE 10 GENE: N; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: ROSSETTA; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PLOU3 KEYWDS DDEDH FAMILY, 3'-5'EXORIBONUCLEASE, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.JIANG,Q.HUANG,W.WANG,H.DONG,H.LY,Y.LIANG,C.DONG REVDAT 4 28-FEB-24 4GV3 1 REMARK SEQADV LINK REVDAT 3 10-JUL-13 4GV3 1 JRNL REVDAT 2 15-MAY-13 4GV3 1 JRNL REVDAT 1 01-MAY-13 4GV3 0 JRNL AUTH X.JIANG,Q.HUANG,W.WANG,H.DONG,H.LY,Y.LIANG,C.DONG JRNL TITL STRUCTURES OF ARENAVIRAL NUCLEOPROTEINS WITH TRIPHOSPHATE JRNL TITL 2 DSRNA REVEAL A UNIQUE MECHANISM OF IMMUNE SUPPRESSION. JRNL REF J.BIOL.CHEM. V. 288 16949 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23615902 JRNL DOI 10.1074/JBC.M112.420521 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1628 REMARK 3 NUCLEIC ACID ATOMS : 181 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 3.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.807 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1865 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1674 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2560 ; 1.016 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3874 ; 0.757 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 5.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;34.813 ;24.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;12.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.868 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1956 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3539 ; 1.108 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 73 ;21.219 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3614 ; 4.351 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 52.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18.5% PEGMME 5000, 0.1M SODIUM CITRATE REMARK 280 PH4.5 AND 2.4% PEGMME350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.41000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.29000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.20500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.29000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.61500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.20500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 156.61500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C C 1 REMARK 465 LYS A 516 REMARK 465 LYS A 517 REMARK 465 LYS A 518 REMARK 465 ARG A 519 REMARK 465 GLY A 520 REMARK 465 GLY A 521 REMARK 465 THR A 564 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 G B 9 O2 C C 4 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 715 O HOH A 833 5445 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 9 O3' G B 10 P -0.194 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 9 C3' - O3' - P ANGL. DEV. = 9.8 DEGREES REMARK 500 G B 10 O3' - P - O5' ANGL. DEV. = -12.1 DEGREES REMARK 500 G B 10 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 396 60.26 -151.70 REMARK 500 SER A 430 -71.04 -141.22 REMARK 500 ARG A 476 58.65 -102.93 REMARK 500 THR A 562 -155.49 -99.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 11 OP1 REMARK 620 2 ASP A 389 OD1 108.0 REMARK 620 3 HOH A 703 O 89.6 85.7 REMARK 620 4 HOH A 718 O 96.0 91.4 174.2 REMARK 620 5 HOH A 804 O 145.5 105.6 85.4 90.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 399 OE2 REMARK 620 2 CYS A 506 SG 102.9 REMARK 620 3 HIS A 509 NE2 110.0 108.3 REMARK 620 4 CYS A 529 SG 111.4 118.8 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MWP RELATED DB: PDB REMARK 900 DOMAIN REMARK 900 RELATED ID: 4G9Z RELATED DB: PDB REMARK 900 SOAKING WITH MN2+ IN 1 MIN DBREF 4GV3 A 364 569 UNP P13699 NCAP_LASSJ 364 569 DBREF 4GV3 B 8 11 PDB 4GV3 4GV3 8 11 DBREF 4GV3 C 1 5 PDB 4GV3 4GV3 1 5 SEQADV 4GV3 GLY A 356 UNP P13699 EXPRESSION TAG SEQADV 4GV3 ALA A 357 UNP P13699 EXPRESSION TAG SEQADV 4GV3 MET A 358 UNP P13699 EXPRESSION TAG SEQADV 4GV3 ASP A 359 UNP P13699 EXPRESSION TAG SEQADV 4GV3 HIS A 360 UNP P13699 EXPRESSION TAG SEQADV 4GV3 VAL A 361 UNP P13699 EXPRESSION TAG SEQADV 4GV3 GLU A 362 UNP P13699 EXPRESSION TAG SEQADV 4GV3 PHE A 363 UNP P13699 EXPRESSION TAG SEQRES 1 B 4 GTP G G C SEQRES 1 C 5 C G C C C SEQRES 1 A 214 GLY ALA MET ASP HIS VAL GLU PHE GLY LEU THR TYR SER SEQRES 2 A 214 GLN LEU MET THR LEU LYS ASP ALA MET LEU GLN LEU ASP SEQRES 3 A 214 PRO ASN ALA LYS THR TRP MET ASP ILE GLU GLY ARG PRO SEQRES 4 A 214 GLU ASP PRO VAL GLU ILE ALA LEU TYR GLN PRO SER SER SEQRES 5 A 214 GLY CYS TYR ILE HIS PHE PHE ARG GLU PRO THR ASP LEU SEQRES 6 A 214 LYS GLN PHE LYS GLN ASP ALA LYS TYR SER HIS GLY ILE SEQRES 7 A 214 ASP VAL THR ASP LEU PHE ALA THR GLN PRO GLY LEU THR SEQRES 8 A 214 SER ALA VAL ILE ASP ALA LEU PRO ARG ASN MET VAL ILE SEQRES 9 A 214 THR CYS GLN GLY SER ASP ASP ILE ARG LYS LEU LEU GLU SEQRES 10 A 214 SER GLN GLY ARG LYS ASP ILE LYS LEU ILE ASP ILE ALA SEQRES 11 A 214 LEU SER LYS THR ASP SER ARG LYS TYR GLU ASN ALA VAL SEQRES 12 A 214 TRP ASP GLN TYR LYS ASP LEU CYS HIS MET HIS THR GLY SEQRES 13 A 214 VAL VAL VAL GLU LYS LYS LYS ARG GLY GLY LYS GLU GLU SEQRES 14 A 214 ILE THR PRO HIS CYS ALA LEU MET ASP CYS ILE MET PHE SEQRES 15 A 214 ASP ALA ALA VAL SER GLY GLY LEU ASN THR SER VAL LEU SEQRES 16 A 214 ARG ALA VAL LEU PRO ARG ASP MET VAL PHE ARG THR SER SEQRES 17 A 214 THR PRO ARG VAL VAL LEU MODRES 4GV3 GTP B 8 G GUANOSINE-5'-TRIPHOSPHATE HET GTP B 8 32 HET MN B 101 1 HET ZN A 601 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM ZN ZINC ION FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 4 MN MN 2+ FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *177(H2 O) HELIX 1 1 THR A 366 MET A 377 1 12 HELIX 2 2 LEU A 378 LEU A 380 5 3 HELIX 3 3 ASP A 419 SER A 430 1 12 HELIX 4 4 ASP A 434 PHE A 439 5 6 HELIX 5 5 GLY A 444 LEU A 453 1 10 HELIX 6 6 GLY A 463 GLN A 474 1 12 HELIX 7 7 SER A 487 ARG A 492 1 6 HELIX 8 8 TYR A 494 LYS A 503 1 10 HELIX 9 9 ASP A 504 CYS A 506 5 3 HELIX 10 10 CYS A 529 GLY A 543 1 15 HELIX 11 11 PRO A 555 PHE A 560 1 6 SHEET 1 A 4 TRP A 387 ARG A 393 0 SHEET 2 A 4 ASP A 396 TYR A 403 -1 O TYR A 403 N TRP A 387 SHEET 3 A 4 CYS A 409 PHE A 414 -1 O PHE A 413 N ILE A 400 SHEET 4 A 4 ARG A 551 ALA A 552 1 O ARG A 551 N TYR A 410 SHEET 1 B 2 VAL A 458 CYS A 461 0 SHEET 2 B 2 LYS A 480 ASP A 483 1 O LYS A 480 N ILE A 459 SHEET 1 C 2 VAL A 513 VAL A 514 0 SHEET 2 C 2 GLU A 524 ILE A 525 -1 O ILE A 525 N VAL A 513 LINK O3' GTP B 8 P G B 9 1555 1555 1.58 LINK OP1 C B 11 MN MN B 101 1555 1555 2.44 LINK MN MN B 101 OD1 ASP A 389 1555 1555 2.09 LINK MN MN B 101 O HOH A 703 1555 1555 2.09 LINK MN MN B 101 O HOH A 718 1555 1555 2.16 LINK MN MN B 101 O HOH A 804 1555 1555 2.14 LINK OE2 GLU A 399 ZN ZN A 601 1555 1555 2.09 LINK SG CYS A 506 ZN ZN A 601 1555 1555 2.31 LINK NE2 HIS A 509 ZN ZN A 601 1555 1555 2.10 LINK SG CYS A 529 ZN ZN A 601 1555 1555 2.28 SITE 1 AC1 6 ASP A 389 HOH A 703 HOH A 718 HOH A 804 SITE 2 AC1 6 G B 10 C B 11 SITE 1 AC2 4 GLU A 399 CYS A 506 HIS A 509 CYS A 529 CRYST1 46.580 46.580 208.820 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004789 0.00000 HETATM 1 PG GTP B 8 10.251 -10.511 -7.836 1.00 51.13 P ANISOU 1 PG GTP B 8 6602 6708 6115 -142 -177 -194 P HETATM 2 O1G GTP B 8 8.981 -10.122 -7.112 1.00 43.60 O ANISOU 2 O1G GTP B 8 6125 5643 4797 -528 -795 -309 O HETATM 3 O2G GTP B 8 10.778 -9.461 -8.786 1.00 52.49 O ANISOU 3 O2G GTP B 8 6832 6804 6307 -510 -380 -57 O HETATM 4 O3G GTP B 8 10.226 -11.904 -8.419 1.00 51.34 O ANISOU 4 O3G GTP B 8 6816 6775 5912 -256 -426 -324 O HETATM 5 O3B GTP B 8 11.382 -10.603 -6.689 1.00 50.79 O ANISOU 5 O3B GTP B 8 6506 6500 6291 -113 -224 -331 O HETATM 6 PB GTP B 8 11.442 -9.560 -5.461 1.00 48.70 P ANISOU 6 PB GTP B 8 6300 6468 5736 227 -121 -6 P HETATM 7 O1B GTP B 8 10.317 -9.893 -4.508 1.00 51.00 O ANISOU 7 O1B GTP B 8 6371 6844 6163 -225 -25 -116 O HETATM 8 O2B GTP B 8 12.857 -9.504 -4.939 1.00 48.79 O ANISOU 8 O2B GTP B 8 6220 6884 5432 -62 108 -435 O HETATM 9 O3A GTP B 8 11.079 -8.159 -6.168 1.00 45.17 O ANISOU 9 O3A GTP B 8 5664 5672 5826 -131 137 -252 O HETATM 10 PA GTP B 8 12.144 -7.148 -6.836 1.00 44.97 P ANISOU 10 PA GTP B 8 5734 5148 6205 -96 136 -454 P HETATM 11 O1A GTP B 8 13.498 -7.813 -6.932 1.00 46.78 O ANISOU 11 O1A GTP B 8 5754 5451 6569 -22 274 -88 O HETATM 12 O2A GTP B 8 11.510 -6.601 -8.094 1.00 45.23 O ANISOU 12 O2A GTP B 8 5854 5632 5698 -154 308 -514 O HETATM 13 O5' GTP B 8 12.235 -5.934 -5.774 1.00 36.08 O ANISOU 13 O5' GTP B 8 4346 4997 4365 -90 448 141 O HETATM 14 C5' GTP B 8 11.852 -6.055 -4.401 1.00 28.53 C ANISOU 14 C5' GTP B 8 3425 3435 3980 413 41 -48 C HETATM 15 C4' GTP B 8 10.877 -4.944 -4.017 1.00 23.09 C ANISOU 15 C4' GTP B 8 2981 2994 2798 39 12 213 C HETATM 16 O4' GTP B 8 9.765 -4.881 -4.912 1.00 21.31 O ANISOU 16 O4' GTP B 8 2772 2695 2628 -23 171 30 O HETATM 17 C3' GTP B 8 10.293 -5.173 -2.634 1.00 21.46 C ANISOU 17 C3' GTP B 8 2631 2715 2807 55 39 -29 C HETATM 18 O3' GTP B 8 10.966 -4.369 -1.655 1.00 23.12 O ANISOU 18 O3' GTP B 8 2951 3111 2723 -221 121 -85 O HETATM 19 C2' GTP B 8 8.828 -4.819 -2.726 1.00 19.55 C ANISOU 19 C2' GTP B 8 2587 2492 2347 -14 36 50 C HETATM 20 O2' GTP B 8 8.594 -3.504 -2.216 1.00 17.72 O ANISOU 20 O2' GTP B 8 2537 2494 1701 64 70 233 O HETATM 21 C1' GTP B 8 8.515 -4.892 -4.209 1.00 19.29 C ANISOU 21 C1' GTP B 8 2577 2397 2354 -9 -68 84 C HETATM 22 N9 GTP B 8 7.763 -6.126 -4.560 1.00 16.35 N ANISOU 22 N9 GTP B 8 2207 2392 1611 56 -54 154 N HETATM 23 C8 GTP B 8 8.203 -7.102 -5.379 1.00 16.64 C ANISOU 23 C8 GTP B 8 2344 2352 1623 36 30 154 C HETATM 24 N7 GTP B 8 7.282 -8.088 -5.512 1.00 14.55 N ANISOU 24 N7 GTP B 8 2173 2295 1057 129 12 208 N HETATM 25 C5 GTP B 8 6.222 -7.740 -4.769 1.00 13.80 C ANISOU 25 C5 GTP B 8 1993 2060 1189 109 -102 204 C HETATM 26 C6 GTP B 8 4.908 -8.336 -4.467 1.00 13.63 C ANISOU 26 C6 GTP B 8 2008 1974 1196 105 6 50 C HETATM 27 O6 GTP B 8 4.578 -9.432 -4.966 1.00 13.28 O ANISOU 27 O6 GTP B 8 1936 1893 1218 261 316 -28 O HETATM 28 N1 GTP B 8 4.088 -7.663 -3.645 1.00 13.01 N ANISOU 28 N1 GTP B 8 1743 1811 1388 129 -92 112 N HETATM 29 C2 GTP B 8 4.430 -6.479 -3.095 1.00 12.69 C ANISOU 29 C2 GTP B 8 1788 1781 1250 153 -79 155 C HETATM 30 N2 GTP B 8 3.555 -5.852 -2.272 1.00 12.36 N ANISOU 30 N2 GTP B 8 1705 1668 1321 68 -44 159 N HETATM 31 N3 GTP B 8 5.621 -5.874 -3.329 1.00 12.73 N ANISOU 31 N3 GTP B 8 1856 1890 1091 57 -191 234 N HETATM 32 C4 GTP B 8 6.540 -6.449 -4.143 1.00 14.38 C ANISOU 32 C4 GTP B 8 2134 2078 1250 180 -88 129 C