HEADER TRANSFERASE 31-AUG-12 4GW0 TITLE CRYSTAL STRUCTURE OF ARGININE KINASE IN COMPLEX WITH IMINO-L- TITLE 2 ORNITHINE, MGADP, AND NITRATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMULUS POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: ATLANTIC HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ARGININE KINASE, PHOSPHAGEN KINASE, TRANSFERASE, TRANSITION STATE KEYWDS 2 ANALOG, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.CLARK,O.DAVULCU,M.S.CHAPMAN REVDAT 3 13-SEP-23 4GW0 1 REMARK SEQADV LINK REVDAT 2 31-OCT-12 4GW0 1 JRNL REVDAT 1 03-OCT-12 4GW0 0 JRNL AUTH S.A.CLARK,O.DAVULCU,M.S.CHAPMAN JRNL TITL CRYSTAL STRUCTURES OF ARGININE KINASE IN COMPLEX WITH ADP, JRNL TITL 2 NITRATE, AND VARIOUS PHOSPHAGEN ANALOGS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 427 212 2012 JRNL REFN ISSN 0006-291X JRNL PMID 22995310 JRNL DOI 10.1016/J.BBRC.2012.09.053 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 13808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.940 REMARK 3 FREE R VALUE TEST SET COUNT : 406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 28.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.39400 REMARK 3 B22 (A**2) : 13.79610 REMARK 3 B33 (A**2) : -7.40220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2964 REMARK 3 ANGLE : 0.833 4003 REMARK 3 CHIRALITY : 0.058 438 REMARK 3 PLANARITY : 0.004 511 REMARK 3 DIHEDRAL : 14.562 1122 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR REMARK 3 RESID 269:276 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6897 4.1368 -0.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1462 REMARK 3 T33: 0.2522 T12: 0.1475 REMARK 3 T13: 0.0073 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 1.6602 L22: 2.2831 REMARK 3 L33: 2.3606 L12: -0.5028 REMARK 3 L13: 0.3769 L23: -0.0684 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.1910 S13: 0.4622 REMARK 3 S21: 0.0734 S22: -0.0159 S23: 0.6421 REMARK 3 S31: -0.8152 S32: -0.9373 S33: -0.0442 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR REMARK 3 RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6224 -7.2677 -17.0193 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1802 REMARK 3 T33: 0.1079 T12: 0.0203 REMARK 3 T13: -0.0203 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.1678 L22: 1.4187 REMARK 3 L33: 1.2274 L12: 0.4908 REMARK 3 L13: 0.2491 L23: -0.3076 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: 0.5293 S13: 0.0499 REMARK 3 S21: -0.2898 S22: 0.0264 S23: -0.0140 REMARK 3 S31: -0.0469 S32: 0.1226 S33: 0.0180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 174:187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1960 -23.5182 -9.1281 REMARK 3 T TENSOR REMARK 3 T11: 0.3990 T22: 0.1198 REMARK 3 T33: 0.2545 T12: 0.0831 REMARK 3 T13: -0.1636 T23: -0.1453 REMARK 3 L TENSOR REMARK 3 L11: 0.1320 L22: 0.3200 REMARK 3 L33: 0.4033 L12: 0.1043 REMARK 3 L13: 0.1870 L23: 0.3291 REMARK 3 S TENSOR REMARK 3 S11: 0.5239 S12: 0.2441 S13: -0.5067 REMARK 3 S21: -0.3038 S22: -0.1483 S23: 0.1011 REMARK 3 S31: 0.6682 S32: -0.0555 S33: 0.1872 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR REMARK 3 RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR REMARK 3 RESID 277:290 OR RESID 330:357 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1317 -8.6606 1.5439 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0951 REMARK 3 T33: 0.0903 T12: -0.0584 REMARK 3 T13: -0.0277 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.5402 L22: 1.2996 REMARK 3 L33: 1.5974 L12: 0.0463 REMARK 3 L13: 0.2331 L23: -0.4960 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: 0.1203 S13: -0.1383 REMARK 3 S21: 0.1883 S22: -0.4042 S23: -0.2575 REMARK 3 S31: -0.1693 S32: 0.6027 S33: -0.1070 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 293:310 OR RESID 321:329 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6207 -10.5917 12.8332 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.1883 REMARK 3 T33: 0.2137 T12: -0.0541 REMARK 3 T13: 0.0427 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8366 L22: 1.0672 REMARK 3 L33: 0.5219 L12: -0.3839 REMARK 3 L13: 0.5306 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: -0.4395 S13: 0.0723 REMARK 3 S21: 0.6585 S22: -0.0383 S23: 0.5064 REMARK 3 S31: -0.1113 S32: -0.1684 S33: 0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.448 REMARK 200 RESOLUTION RANGE LOW (A) : 32.485 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: PDB ENTRY 1M15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 30 MG/ML, 26% PEG 6000, REMARK 280 0.05M HEPES, 0.1M MAGNESIUM CHLORIDE, 0.02M POTASSIUM ADP, 0.25M REMARK 280 SODIUM NITRATE, 0.025M SODIUM AZIDE, 0.005M DTT, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.59200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.98100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.55150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.98100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.59200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.55150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 622 O HOH A 630 4545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 172.08 -59.42 REMARK 500 ASP A 114 74.95 -160.53 REMARK 500 ASP A 161 -130.56 58.58 REMARK 500 GLU A 224 -120.26 -85.82 REMARK 500 LYS A 292 -7.14 -55.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O1B REMARK 620 2 ADP A 401 O1A 77.4 REMARK 620 3 NO3 A 404 O1 63.6 80.5 REMARK 620 4 HOH A 504 O 87.1 160.7 102.9 REMARK 620 5 HOH A 507 O 86.7 72.5 143.7 95.5 REMARK 620 6 HOH A 618 O 155.7 90.0 94.2 108.5 109.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ILO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M10 RELATED DB: PDB REMARK 900 SAME PROTEIN IN AN UNLIGANDED FORM. REMARK 900 RELATED ID: 1M15 RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO L-ARGININE, MGADP, AND NITRATE. REMARK 900 RELATED ID: 4GVY RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO L-CITRULLINE AND MGADP. REMARK 900 RELATED ID: 4GVZ RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO D-ARGININE, MGADP, AND NITRATE. REMARK 900 RELATED ID: 4GW2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO L-ORNITHINE, MGADP, AND NITRATE. DBREF 4GW0 A 1 357 UNP P51541 KARG_LIMPO 1 357 SEQADV 4GW0 GLN A 103 UNP P51541 GLU 103 ENGINEERED MUTATION SEQADV 4GW0 GLY A 112 UNP P51541 ASP 112 ENGINEERED MUTATION SEQADV 4GW0 ALA A 116 UNP P51541 GLY 116 ENGINEERED MUTATION SEQRES 1 A 357 MET VAL ASP GLN ALA THR LEU ASP LYS LEU GLU ALA GLY SEQRES 2 A 357 PHE LYS LYS LEU GLN GLU ALA SER ASP CYS LYS SER LEU SEQRES 3 A 357 LEU LYS LYS HIS LEU THR LYS ASP VAL PHE ASP SER ILE SEQRES 4 A 357 LYS ASN LYS LYS THR GLY MET GLY ALA THR LEU LEU ASP SEQRES 5 A 357 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 357 GLY ILE TYR ALA PRO ASP ALA GLU SER TYR ARG THR PHE SEQRES 7 A 357 GLY PRO LEU PHE ASP PRO ILE ILE ASP ASP TYR HIS GLY SEQRES 8 A 357 GLY PHE LYS LEU THR ASP LYS HIS PRO PRO LYS GLN TRP SEQRES 9 A 357 GLY ASP ILE ASN THR LEU VAL GLY LEU ASP PRO ALA GLY SEQRES 10 A 357 GLN PHE ILE ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 357 LEU GLN GLY TYR PRO PHE ASN PRO CYS LEU THR ALA GLU SEQRES 12 A 357 GLN TYR LYS GLU MET GLU GLU LYS VAL SER SER THR LEU SEQRES 13 A 357 SER SER MET GLU ASP GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 357 LEU THR GLY MET SER LYS ALA THR GLN GLN GLN LEU ILE SEQRES 15 A 357 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 357 GLN THR ALA ASN ALA CYS ARG TYR TRP PRO THR GLY ARG SEQRES 17 A 357 GLY ILE PHE HIS ASN ASP ALA LYS THR PHE LEU VAL TRP SEQRES 18 A 357 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 357 LYS GLY GLY ASP LEU LYS THR VAL TYR LYS ARG LEU VAL SEQRES 20 A 357 THR ALA VAL ASP ASN ILE GLU SER LYS LEU PRO PHE SER SEQRES 21 A 357 HIS ASP ASP ARG PHE GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 357 ASN LEU GLY THR THR MET ARG ALA SER VAL HIS ILE GLN SEQRES 23 A 357 LEU PRO LYS LEU ALA LYS ASP ARG LYS VAL LEU GLU ASP SEQRES 24 A 357 ILE ALA SER LYS PHE ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 A 357 GLY GLU HIS THR GLU SER GLU GLY GLY VAL TYR ASP ILE SEQRES 26 A 357 SER ASN LYS ARG ARG LEU GLY LEU THR GLU TYR GLN ALA SEQRES 27 A 357 VAL ARG GLU MET GLN ASP GLY ILE LEU GLU MET ILE LYS SEQRES 28 A 357 MET GLU LYS ALA ALA ALA HET ADP A 401 27 HET MG A 402 1 HET ILO A 403 12 HET NO3 A 404 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ILO N5-IMINOETHYL-L-ORNITHINE HETNAM NO3 NITRATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 ILO C7 H15 N3 O2 FORMUL 5 NO3 N O3 1- FORMUL 6 HOH *182(H2 O) HELIX 1 1 ASP A 3 ALA A 20 1 18 HELIX 2 2 SER A 25 LEU A 31 1 7 HELIX 3 3 THR A 32 LYS A 40 1 9 HELIX 4 4 THR A 49 ASN A 60 1 12 HELIX 5 5 GLU A 73 PHE A 78 1 6 HELIX 6 6 PHE A 78 HIS A 90 1 13 HELIX 7 7 ASP A 106 LEU A 110 5 5 HELIX 8 8 PHE A 136 LEU A 140 5 5 HELIX 9 9 THR A 141 SER A 157 1 17 HELIX 10 10 SER A 158 MET A 159 5 2 HELIX 11 11 GLU A 160 LYS A 164 5 5 HELIX 12 12 SER A 174 ASP A 184 1 11 HELIX 13 13 ASP A 192 ALA A 198 1 7 HELIX 14 14 ASP A 238 SER A 255 1 18 HELIX 15 15 CYS A 271 LEU A 275 5 5 HELIX 16 16 ASP A 293 LYS A 303 1 11 HELIX 17 17 THR A 334 ALA A 356 1 23 SHEET 1 A 8 THR A 166 PRO A 169 0 SHEET 2 A 8 GLY A 209 HIS A 212 -1 O ILE A 210 N TYR A 168 SHEET 3 A 8 PHE A 218 VAL A 222 -1 O VAL A 222 N GLY A 209 SHEET 4 A 8 LEU A 228 LYS A 235 -1 O ILE A 231 N LEU A 219 SHEET 5 A 8 ILE A 120 ARG A 129 -1 N VAL A 125 O SER A 232 SHEET 6 A 8 ARG A 280 GLN A 286 -1 O HIS A 284 N ILE A 121 SHEET 7 A 8 VAL A 322 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 A 8 LEU A 306 ARG A 309 -1 N ARG A 309 O ASP A 324 SHEET 1 B 2 HIS A 261 ASP A 262 0 SHEET 2 B 2 GLY A 266 PHE A 267 -1 O GLY A 266 N ASP A 262 LINK O1B ADP A 401 MG MG A 402 1555 1555 2.28 LINK O1A ADP A 401 MG MG A 402 1555 1555 2.36 LINK MG MG A 402 O1 NO3 A 404 1555 1555 2.20 LINK MG MG A 402 O HOH A 504 1555 1555 2.09 LINK MG MG A 402 O HOH A 507 1555 1555 2.07 LINK MG MG A 402 O HOH A 618 1555 1555 2.06 CISPEP 1 TRP A 204 PRO A 205 0 3.63 SITE 1 AC1 24 SER A 122 ARG A 124 ARG A 126 HIS A 185 SITE 2 AC1 24 TRP A 221 ARG A 229 ARG A 280 SER A 282 SITE 3 AC1 24 VAL A 283 HIS A 284 ARG A 309 THR A 311 SITE 4 AC1 24 ARG A 312 GLY A 313 GLU A 314 ASP A 324 SITE 5 AC1 24 MG A 402 NO3 A 404 HOH A 504 HOH A 506 SITE 6 AC1 24 HOH A 507 HOH A 526 HOH A 528 HOH A 556 SITE 1 AC2 5 ADP A 401 NO3 A 404 HOH A 504 HOH A 507 SITE 2 AC2 5 HOH A 618 SITE 1 AC3 14 SER A 63 GLY A 64 VAL A 65 GLY A 66 SITE 2 AC3 14 TYR A 68 GLU A 225 CYS A 271 THR A 273 SITE 3 AC3 14 GLU A 314 HIS A 315 NO3 A 404 HOH A 529 SITE 4 AC3 14 HOH A 536 HOH A 646 SITE 1 AC4 9 ARG A 126 GLU A 225 ARG A 229 ASN A 274 SITE 2 AC4 9 ARG A 309 ADP A 401 MG A 402 ILO A 403 SITE 3 AC4 9 HOH A 504 CRYST1 65.184 71.103 79.962 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015341 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012506 0.00000