HEADER TRANSFERASE 31-AUG-12 4GW2 TITLE CRYSTAL STRUCTURE OF ARGININE KINASE IN COMPLEX WITH L-ORNITHINE, TITLE 2 MGADP, AND NITRATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMULUS POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: ATLANTIC HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ARGININE KINASE, PHOSPHAGEN KINASE, TRANSFERASE, TRANSITION STATE KEYWDS 2 ANALOG, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.CLARK,O.DAVULCU,M.S.CHAPMAN REVDAT 5 13-SEP-23 4GW2 1 REMARK SEQADV LINK REVDAT 4 28-FEB-18 4GW2 1 REMARK REVDAT 3 31-JAN-18 4GW2 1 REMARK REVDAT 2 31-OCT-12 4GW2 1 JRNL REVDAT 1 03-OCT-12 4GW2 0 JRNL AUTH S.A.CLARK,O.DAVULCU,M.S.CHAPMAN JRNL TITL CRYSTAL STRUCTURES OF ARGININE KINASE IN COMPLEX WITH ADP, JRNL TITL 2 NITRATE, AND VARIOUS PHOSPHAGEN ANALOGS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 427 212 2012 JRNL REFN ISSN 0006-291X JRNL PMID 22995310 JRNL DOI 10.1016/J.BBRC.2012.09.053 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 19862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.020 REMARK 3 FREE R VALUE TEST SET COUNT : 600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6505 - 3.4225 1.00 5138 157 0.1675 0.1982 REMARK 3 2 3.4225 - 2.7171 0.99 4915 154 0.2044 0.2186 REMARK 3 3 2.7171 - 2.3738 0.97 4761 146 0.2257 0.2783 REMARK 3 4 2.3738 - 2.1569 0.91 4448 143 0.2473 0.3184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 35.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.70100 REMARK 3 B22 (A**2) : 13.45190 REMARK 3 B33 (A**2) : -6.75080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2963 REMARK 3 ANGLE : 0.892 4001 REMARK 3 CHIRALITY : 0.065 438 REMARK 3 PLANARITY : 0.005 510 REMARK 3 DIHEDRAL : 14.099 1121 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR REMARK 3 RESID 269:276 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3705 -4.4483 39.7073 REMARK 3 T TENSOR REMARK 3 T11: 0.3397 T22: 0.3389 REMARK 3 T33: 0.3904 T12: 0.3198 REMARK 3 T13: 0.0508 T23: 0.2712 REMARK 3 L TENSOR REMARK 3 L11: 1.1001 L22: 1.7675 REMARK 3 L33: 1.9733 L12: 0.0457 REMARK 3 L13: -0.1735 L23: -0.2823 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.3273 S13: -0.7328 REMARK 3 S21: -0.0516 S22: -0.1462 S23: -0.7315 REMARK 3 S31: 0.7586 S32: 0.9023 S33: -0.2310 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR REMARK 3 RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3837 7.1715 23.1503 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.2561 REMARK 3 T33: 0.2067 T12: -0.0227 REMARK 3 T13: -0.0156 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.4958 L22: 0.9499 REMARK 3 L33: 1.9425 L12: 0.6236 REMARK 3 L13: -0.5637 L23: 0.2164 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.5117 S13: 0.0438 REMARK 3 S21: -0.3148 S22: 0.0610 S23: 0.0271 REMARK 3 S31: 0.2324 S32: -0.0278 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 174:187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0354 23.4521 31.0868 REMARK 3 T TENSOR REMARK 3 T11: 0.4527 T22: 0.1178 REMARK 3 T33: 0.4673 T12: 0.0078 REMARK 3 T13: 0.1748 T23: 0.0727 REMARK 3 L TENSOR REMARK 3 L11: 1.2775 L22: 0.0006 REMARK 3 L33: 0.2308 L12: -0.0113 REMARK 3 L13: -0.5429 L23: 0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.5362 S12: 0.2699 S13: 0.7598 REMARK 3 S21: -0.2981 S22: -0.0539 S23: -0.1981 REMARK 3 S31: -0.7944 S32: -0.0049 S33: 0.2917 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR REMARK 3 RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR REMARK 3 RESID 277:290 OR RESID 330:357 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5898 8.7297 41.6374 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1084 REMARK 3 T33: 0.1655 T12: -0.0518 REMARK 3 T13: 0.0058 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.3931 L22: 0.9040 REMARK 3 L33: 2.3851 L12: 0.1802 REMARK 3 L13: -0.6736 L23: 0.6116 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.0341 S13: 0.1175 REMARK 3 S21: 0.1008 S22: -0.1337 S23: 0.1921 REMARK 3 S31: 0.2196 S32: -0.4203 S33: -0.0597 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 293:310 OR RESID 321:329 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1290 10.3392 53.1243 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.3665 REMARK 3 T33: 0.2676 T12: -0.0895 REMARK 3 T13: -0.0295 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 0.5642 L22: 0.3872 REMARK 3 L33: 0.3709 L12: -0.3426 REMARK 3 L13: -0.2009 L23: -0.1084 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.4948 S13: -0.0665 REMARK 3 S21: 0.5599 S22: -0.0473 S23: -0.3864 REMARK 3 S31: -0.0394 S32: 0.3226 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19862 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.157 REMARK 200 RESOLUTION RANGE LOW (A) : 29.648 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS WITH PDB ENTRY REMARK 200 1M15 REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: PDB ENTRY 1M15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 30 MG/ML, 26% PEG 6000, REMARK 280 0.05M HEPES, 0.1M MAGNESIUM CHLORIDE, 0.02M POTASSIUM ADP, 0.25M REMARK 280 SODIUM NITRATE, 0.025M SODIUM AZIDE, 0.005M DTT, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 398.0K, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.69650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.15600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.69650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.15600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 25 O HOH A 659 1.98 REMARK 500 O LYS A 28 O HOH A 704 2.12 REMARK 500 N LEU A 31 O HOH A 704 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 93 97.93 -160.96 REMARK 500 ASP A 114 73.14 -159.79 REMARK 500 ASP A 161 -129.34 57.01 REMARK 500 GLU A 224 -119.51 -85.50 REMARK 500 LYS A 292 6.70 -54.67 REMARK 500 ASP A 293 108.34 -173.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O1B REMARK 620 2 ADP A 401 O1A 83.9 REMARK 620 3 HOH A 695 O 96.6 174.5 REMARK 620 4 HOH A 696 O 76.7 71.1 103.7 REMARK 620 5 HOH A 697 O 114.3 78.6 106.0 146.6 REMARK 620 6 HOH A 698 O 151.7 78.7 98.6 76.6 84.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M10 RELATED DB: PDB REMARK 900 SAME PROTEIN IN AN UNLIGANDED FORM. REMARK 900 RELATED ID: 1M15 RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO L-ARGININE, MGADP, AND NITRATE. REMARK 900 RELATED ID: 4GVY RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO L-CITRULLINE AND MGADP. REMARK 900 RELATED ID: 4GVZ RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO D-ARGININE, MGADP, AND NITRATE. REMARK 900 RELATED ID: 4GW0 RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO IMINO-L-ORNITHINE, MGADP, AND NITRATE. DBREF 4GW2 A 1 357 UNP P51541 KARG_LIMPO 1 357 SEQADV 4GW2 GLN A 103 UNP P51541 GLU 103 ENGINEERED MUTATION SEQADV 4GW2 GLY A 112 UNP P51541 ASP 112 ENGINEERED MUTATION SEQADV 4GW2 ALA A 116 UNP P51541 GLY 116 ENGINEERED MUTATION SEQRES 1 A 357 MET VAL ASP GLN ALA THR LEU ASP LYS LEU GLU ALA GLY SEQRES 2 A 357 PHE LYS LYS LEU GLN GLU ALA SER ASP CYS LYS SER LEU SEQRES 3 A 357 LEU LYS LYS HIS LEU THR LYS ASP VAL PHE ASP SER ILE SEQRES 4 A 357 LYS ASN LYS LYS THR GLY MET GLY ALA THR LEU LEU ASP SEQRES 5 A 357 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 357 GLY ILE TYR ALA PRO ASP ALA GLU SER TYR ARG THR PHE SEQRES 7 A 357 GLY PRO LEU PHE ASP PRO ILE ILE ASP ASP TYR HIS GLY SEQRES 8 A 357 GLY PHE LYS LEU THR ASP LYS HIS PRO PRO LYS GLN TRP SEQRES 9 A 357 GLY ASP ILE ASN THR LEU VAL GLY LEU ASP PRO ALA GLY SEQRES 10 A 357 GLN PHE ILE ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 357 LEU GLN GLY TYR PRO PHE ASN PRO CYS LEU THR ALA GLU SEQRES 12 A 357 GLN TYR LYS GLU MET GLU GLU LYS VAL SER SER THR LEU SEQRES 13 A 357 SER SER MET GLU ASP GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 357 LEU THR GLY MET SER LYS ALA THR GLN GLN GLN LEU ILE SEQRES 15 A 357 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 357 GLN THR ALA ASN ALA CYS ARG TYR TRP PRO THR GLY ARG SEQRES 17 A 357 GLY ILE PHE HIS ASN ASP ALA LYS THR PHE LEU VAL TRP SEQRES 18 A 357 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 357 LYS GLY GLY ASP LEU LYS THR VAL TYR LYS ARG LEU VAL SEQRES 20 A 357 THR ALA VAL ASP ASN ILE GLU SER LYS LEU PRO PHE SER SEQRES 21 A 357 HIS ASP ASP ARG PHE GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 357 ASN LEU GLY THR THR MET ARG ALA SER VAL HIS ILE GLN SEQRES 23 A 357 LEU PRO LYS LEU ALA LYS ASP ARG LYS VAL LEU GLU ASP SEQRES 24 A 357 ILE ALA SER LYS PHE ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 A 357 GLY GLU HIS THR GLU SER GLU GLY GLY VAL TYR ASP ILE SEQRES 26 A 357 SER ASN LYS ARG ARG LEU GLY LEU THR GLU TYR GLN ALA SEQRES 27 A 357 VAL ARG GLU MET GLN ASP GLY ILE LEU GLU MET ILE LYS SEQRES 28 A 357 MET GLU LYS ALA ALA ALA HET ADP A 401 27 HET MG A 402 1 HET ORN A 403 9 HET NO3 A 404 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ORN L-ORNITHINE HETNAM NO3 NITRATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 ORN C5 H12 N2 O2 FORMUL 5 NO3 N O3 1- FORMUL 6 HOH *239(H2 O) HELIX 1 1 ASP A 3 ALA A 20 1 18 HELIX 2 2 SER A 25 LEU A 31 1 7 HELIX 3 3 THR A 32 LYS A 40 1 9 HELIX 4 4 THR A 49 ASN A 60 1 12 HELIX 5 5 GLU A 73 PHE A 78 1 6 HELIX 6 6 PHE A 78 HIS A 90 1 13 HELIX 7 7 ASP A 106 LEU A 110 5 5 HELIX 8 8 PHE A 136 LEU A 140 5 5 HELIX 9 9 THR A 141 SER A 157 1 17 HELIX 10 10 SER A 158 MET A 159 5 2 HELIX 11 11 GLU A 160 LYS A 164 5 5 HELIX 12 12 SER A 174 ASP A 184 1 11 HELIX 13 13 ASP A 192 THR A 197 1 6 HELIX 14 14 ASP A 238 SER A 255 1 18 HELIX 15 15 CYS A 271 LEU A 275 5 5 HELIX 16 16 ASP A 293 PHE A 304 1 12 HELIX 17 17 THR A 334 ALA A 356 1 23 SHEET 1 A 8 THR A 166 PRO A 169 0 SHEET 2 A 8 GLY A 209 HIS A 212 -1 O ILE A 210 N TYR A 168 SHEET 3 A 8 PHE A 218 VAL A 222 -1 O VAL A 220 N PHE A 211 SHEET 4 A 8 LEU A 228 LYS A 235 -1 O ILE A 231 N LEU A 219 SHEET 5 A 8 ILE A 120 ARG A 129 -1 N CYS A 127 O ILE A 230 SHEET 6 A 8 ARG A 280 GLN A 286 -1 O HIS A 284 N ILE A 121 SHEET 7 A 8 VAL A 322 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 A 8 LEU A 306 ARG A 309 -1 N ARG A 309 O ASP A 324 SHEET 1 B 2 HIS A 261 ASP A 262 0 SHEET 2 B 2 GLY A 266 PHE A 267 -1 O GLY A 266 N ASP A 262 LINK O1B ADP A 401 MG MG A 402 1555 1555 2.06 LINK O1A ADP A 401 MG MG A 402 1555 1555 2.33 LINK MG MG A 402 O HOH A 695 1555 1555 2.06 LINK MG MG A 402 O HOH A 696 1555 1555 2.06 LINK MG MG A 402 O HOH A 697 1555 1555 2.07 LINK MG MG A 402 O HOH A 698 1555 1555 2.09 CISPEP 1 TRP A 204 PRO A 205 0 4.14 SITE 1 AC1 26 SER A 122 ARG A 124 ARG A 126 HIS A 185 SITE 2 AC1 26 TRP A 221 ARG A 229 MET A 233 ARG A 280 SITE 3 AC1 26 SER A 282 VAL A 283 HIS A 284 ARG A 309 SITE 4 AC1 26 THR A 311 GLY A 313 GLU A 314 ASP A 324 SITE 5 AC1 26 MG A 402 NO3 A 404 HOH A 586 HOH A 590 SITE 6 AC1 26 HOH A 593 HOH A 595 HOH A 695 HOH A 696 SITE 7 AC1 26 HOH A 697 HOH A 698 SITE 1 AC2 5 ADP A 401 HOH A 695 HOH A 696 HOH A 697 SITE 2 AC2 5 HOH A 698 SITE 1 AC3 11 SER A 63 GLY A 64 VAL A 65 GLY A 66 SITE 2 AC3 11 TYR A 68 GLU A 314 HIS A 315 NO3 A 404 SITE 3 AC3 11 HOH A 570 HOH A 571 HOH A 614 SITE 1 AC4 9 ARG A 126 GLU A 225 THR A 273 ASN A 274 SITE 2 AC4 9 ARG A 309 ADP A 401 ORN A 403 HOH A 567 SITE 3 AC4 9 HOH A 696 CRYST1 65.393 70.312 80.319 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012450 0.00000