data_4GWJ # _entry.id 4GWJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GWJ pdb_00004gwj 10.2210/pdb4gwj/pdb RCSB RCSB074721 ? ? WWPDB D_1000074721 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3LEK 'lectin binding domain complexed with Lewis B' unspecified PDB 3LEG 'lectin binding domain complexed with Lewis Y' unspecified PDB 3LEO 'lectin binding domain complexed with glycerol' unspecified PDB 3LEI 'lectin binding domain complexed with fucose' unspecified PDB 4GWI 'His 62 mutant of lectin binding domain complexed with Lewis y' unspecified # _pdbx_database_status.entry_id 4GWJ _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-09-03 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Feil, S.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Manipulating the Lewis antigen specificity of the cholesterol-dependent cytolysin lectinolysin' _citation.journal_abbrev 'Front Immunol' _citation.journal_volume 3 _citation.page_first 330 _citation.page_last 330 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country CH _citation.journal_id_ISSN 1664-3224 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23181061 _citation.pdbx_database_id_DOI 10.3389/fimmu.2012.00330 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lawrence, S.L.' 1 ? primary 'Feil, S.C.' 2 ? primary 'Holien, J.K.' 3 ? primary 'Kuiper, M.J.' 4 ? primary 'Doughty, L.' 5 ? primary 'Dolezal, O.' 6 ? primary 'Mulhern, T.D.' 7 ? primary 'Tweten, R.K.' 8 ? primary 'Parker, M.W.' 9 ? # _cell.entry_id 4GWJ _cell.length_a 66.923 _cell.length_b 66.923 _cell.length_c 99.387 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GWJ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Platelet aggregation factor Sm-hPAF' 16842.453 1 ? 'Y62H, Q190C' 'lectin binding domain, UNP residues 38-190' ? 2 branched man 'alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose' 675.630 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 147 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 lectinolysin 2 'Lewis B antigen, beta anomer' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EQGNRPVETENIARGKQASQSSTAHGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKDARYVKVELKTKNTPLSLAEVEVFRSATTQVGC ; _entity_poly.pdbx_seq_one_letter_code_can ;EQGNRPVETENIARGKQASQSSTAHGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKDARYVKVELKTKNTPLSLAEVEVFRSATTQVGC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLN n 1 3 GLY n 1 4 ASN n 1 5 ARG n 1 6 PRO n 1 7 VAL n 1 8 GLU n 1 9 THR n 1 10 GLU n 1 11 ASN n 1 12 ILE n 1 13 ALA n 1 14 ARG n 1 15 GLY n 1 16 LYS n 1 17 GLN n 1 18 ALA n 1 19 SER n 1 20 GLN n 1 21 SER n 1 22 SER n 1 23 THR n 1 24 ALA n 1 25 HIS n 1 26 GLY n 1 27 GLY n 1 28 ALA n 1 29 ALA n 1 30 THR n 1 31 ARG n 1 32 ALA n 1 33 VAL n 1 34 ASP n 1 35 GLY n 1 36 ASN n 1 37 VAL n 1 38 ASP n 1 39 SER n 1 40 ASP n 1 41 TYR n 1 42 GLY n 1 43 HIS n 1 44 HIS n 1 45 SER n 1 46 VAL n 1 47 THR n 1 48 HIS n 1 49 THR n 1 50 ASN n 1 51 PHE n 1 52 GLU n 1 53 ASP n 1 54 ASN n 1 55 ALA n 1 56 TRP n 1 57 TRP n 1 58 GLN n 1 59 VAL n 1 60 ASP n 1 61 LEU n 1 62 GLY n 1 63 LYS n 1 64 THR n 1 65 GLU n 1 66 ASN n 1 67 VAL n 1 68 GLY n 1 69 LYS n 1 70 VAL n 1 71 LYS n 1 72 LEU n 1 73 TYR n 1 74 ASN n 1 75 ARG n 1 76 GLY n 1 77 ASP n 1 78 GLY n 1 79 ASN n 1 80 VAL n 1 81 ALA n 1 82 ASN n 1 83 ARG n 1 84 LEU n 1 85 SER n 1 86 ASN n 1 87 PHE n 1 88 ASP n 1 89 VAL n 1 90 VAL n 1 91 LEU n 1 92 LEU n 1 93 ASN n 1 94 GLU n 1 95 ALA n 1 96 LYS n 1 97 GLN n 1 98 GLU n 1 99 VAL n 1 100 ALA n 1 101 ARG n 1 102 GLN n 1 103 HIS n 1 104 PHE n 1 105 ASP n 1 106 SER n 1 107 LEU n 1 108 ASN n 1 109 GLY n 1 110 LYS n 1 111 ALA n 1 112 GLU n 1 113 LEU n 1 114 GLU n 1 115 VAL n 1 116 PHE n 1 117 PHE n 1 118 THR n 1 119 ALA n 1 120 LYS n 1 121 ASP n 1 122 ALA n 1 123 ARG n 1 124 TYR n 1 125 VAL n 1 126 LYS n 1 127 VAL n 1 128 GLU n 1 129 LEU n 1 130 LYS n 1 131 THR n 1 132 LYS n 1 133 ASN n 1 134 THR n 1 135 PRO n 1 136 LEU n 1 137 SER n 1 138 LEU n 1 139 ALA n 1 140 GLU n 1 141 VAL n 1 142 GLU n 1 143 VAL n 1 144 PHE n 1 145 ARG n 1 146 SER n 1 147 ALA n 1 148 THR n 1 149 THR n 1 150 GLN n 1 151 VAL n 1 152 GLY n 1 153 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene samhpaf _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Nm-65 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus mitis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28037 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMSg67 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2PHL4_STRMT _struct_ref.pdbx_db_accession Q2PHL4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EQGNRPVETENIARGKQASQSSTAYGGAAARAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKAARYVKVELKTKNTPLSLAEVEVFRSATTQVGQ ; _struct_ref.pdbx_align_begin 38 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GWJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2PHL4 _struct_ref_seq.db_align_beg 38 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 38 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GWJ HIS A 25 ? UNP Q2PHL4 TYR 62 'engineered mutation' 62 1 1 4GWJ THR A 30 ? UNP Q2PHL4 ALA 67 'SEE REMARK 999' 67 2 1 4GWJ ASP A 121 ? UNP Q2PHL4 ALA 158 'SEE REMARK 999' 158 3 1 4GWJ CYS A 153 ? UNP Q2PHL4 GLN 190 'engineered mutation' 190 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4GWJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.543 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.30 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 62.77 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.75 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '2.4M MgSO4, 0.1M KCl, 0.1M Tris, pH 8.75, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2012-06-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.pdbx_wavelength_list 0.99 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' _diffrn_source.pdbx_synchrotron_beamline MX2 # _reflns.entry_id 4GWJ _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 50.000 _reflns.number_obs 29510 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_netI_over_sigmaI 16.000 _reflns.pdbx_chi_squared 1.072 _reflns.pdbx_redundancy 13.700 _reflns.percent_possible_obs 96.700 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all 30517 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.600 1.660 ? ? ? ? 0.571 ? ? 1.181 13.700 ? ? ? 2952 ? ? ? ? 99.500 ? ? 1 1 1.660 1.720 ? ? ? ? 0.439 ? ? 1.147 14.200 ? ? ? 2980 ? ? ? ? 99.700 ? ? 2 1 1.720 1.800 ? ? ? ? 0.311 ? ? 1.080 14.300 ? ? ? 2986 ? ? ? ? 99.800 ? ? 3 1 1.800 1.900 ? ? ? ? 0.227 ? ? 1.109 14.300 ? ? ? 3010 ? ? ? ? 99.800 ? ? 4 1 1.900 2.020 ? ? ? ? 0.178 ? ? 1.023 14.300 ? ? ? 3005 ? ? ? ? 99.800 ? ? 5 1 2.020 2.170 ? ? ? ? 0.152 ? ? 1.031 14.200 ? ? ? 3014 ? ? ? ? 99.900 ? ? 6 1 2.170 2.390 ? ? ? ? 0.130 ? ? 1.011 13.900 ? ? ? 3028 ? ? ? ? 99.400 ? ? 7 1 2.390 2.740 ? ? ? ? 0.114 ? ? 1.000 13.800 ? ? ? 3027 ? ? ? ? 99.200 ? ? 8 1 2.740 3.450 ? ? ? ? 0.099 ? ? 1.076 12.700 ? ? ? 2889 ? ? ? ? 92.700 ? ? 9 1 3.450 50.000 ? ? ? ? 0.080 ? ? 1.064 11.200 ? ? ? 2619 ? ? ? ? 79.300 ? ? 10 1 # _refine.entry_id 4GWJ _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 39.90 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.6900 _refine.ls_number_reflns_obs 27957 _refine.ls_number_reflns_all 29456 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: REFINED INDIVIDUALLY ; _refine.ls_R_factor_obs 0.18068 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17905 _refine.ls_R_factor_R_free 0.21028 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1499 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 31.135 _refine.aniso_B[1][1] -1.33 _refine.aniso_B[2][2] -1.33 _refine.aniso_B[3][3] 2.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.pdbx_overall_ESU_R 0.0710 _refine.pdbx_overall_ESU_R_Free 0.0750 _refine.overall_SU_ML 0.0420 _refine.overall_SU_B 1.1920 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 107.330 _refine.B_iso_min 18.080 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 4GWI' _refine.pdbx_isotropic_thermal_model ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 147 _refine_hist.number_atoms_total 1302 _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 39.90 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1170 0.029 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1589 2.983 1.964 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 141 5.991 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 59 34.895 24.915 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 185 12.548 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 7 10.168 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 188 0.306 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 868 0.016 0.021 ? ? # _refine_ls_shell.d_res_high 1.6010 _refine_ls_shell.d_res_low 1.6420 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.4500 _refine_ls_shell.number_reflns_R_work 1868 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2580 _refine_ls_shell.R_factor_R_free 0.2850 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 103 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1971 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4GWJ _struct.title 'His 62 mutant of the lectin binding domain of Lectinolysin complexed with Lewis b' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GWJ _struct_keywords.text 'cholesterol-dependent cytolysins, lewis antigens, F-type lectin, glycan binding, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 28 ? ASP A 34 ? ALA A 65 ASP A 71 5 ? 7 HELX_P HELX_P2 2 ASP A 40 ? HIS A 44 ? ASP A 77 HIS A 81 5 ? 5 HELX_P HELX_P3 3 VAL A 80 ? LEU A 84 ? VAL A 117 LEU A 121 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B NAG . O3 ? ? ? 1_555 B GAL . C1 ? ? B NAG 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale2 covale both ? B NAG . O4 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 4 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale3 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 2 B FUC 3 1_555 ? ? ? ? ? ? ? 1.423 ? ? metalc1 metalc ? ? A ARG 31 O ? ? ? 1_555 F CA . CA ? ? A ARG 68 A CA 204 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc2 metalc ? ? A ASP 34 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 71 A CA 204 1_555 ? ? ? ? ? ? ? 2.533 ? ? metalc3 metalc ? ? A ASN 36 O ? ? ? 1_555 F CA . CA ? ? A ASN 73 A CA 204 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc4 metalc ? ? A SER 45 OG ? ? ? 1_555 F CA . CA ? ? A SER 82 A CA 204 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc5 metalc ? ? A SER 45 O ? ? ? 1_555 F CA . CA ? ? A SER 82 A CA 204 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc6 metalc ? ? A ASP 60 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 97 A MG 203 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc7 metalc ? ? A ALA 139 O ? ? ? 1_555 F CA . CA ? ? A ALA 176 A CA 204 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc8 metalc ? ? A GLU 140 OE1 ? ? ? 1_555 F CA . CA ? ? A GLU 177 A CA 204 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 399 1_555 ? ? ? ? ? ? ? 1.905 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 434 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 435 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 437 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 201 A HOH 438 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 331 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 332 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 333 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 376 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 202 A HOH 432 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 375 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 378 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 383 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 417 1_555 ? ? ? ? ? ? ? 1.855 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 17 ? GLN A 20 ? GLN A 54 GLN A 57 A 2 TRP A 56 ? ASN A 74 ? TRP A 93 ASN A 111 A 3 GLU A 112 ? LEU A 129 ? GLU A 149 LEU A 166 A 4 PHE A 87 ? LEU A 92 ? PHE A 124 LEU A 129 A 5 GLU A 98 ? PHE A 104 ? GLU A 135 PHE A 141 B 1 GLN A 17 ? GLN A 20 ? GLN A 54 GLN A 57 B 2 TRP A 56 ? ASN A 74 ? TRP A 93 ASN A 111 B 3 LEU A 138 ? ARG A 145 ? LEU A 175 ARG A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 19 ? N SER A 56 O GLN A 58 ? O GLN A 95 A 2 3 N LEU A 61 ? N LEU A 98 O ARG A 123 ? O ARG A 160 A 3 4 O LYS A 126 ? O LYS A 163 N VAL A 90 ? N VAL A 127 A 4 5 N LEU A 91 ? N LEU A 128 O VAL A 99 ? O VAL A 136 B 1 2 N SER A 19 ? N SER A 56 O GLN A 58 ? O GLN A 95 B 2 3 N LYS A 71 ? N LYS A 108 O GLU A 142 ? O GLU A 179 # _atom_sites.entry_id 4GWJ _atom_sites.fract_transf_matrix[1][1] 0.014943 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014943 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010062 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA MG N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 38 ? ? ? A . n A 1 2 GLN 2 39 ? ? ? A . n A 1 3 GLY 3 40 ? ? ? A . n A 1 4 ASN 4 41 ? ? ? A . n A 1 5 ARG 5 42 ? ? ? A . n A 1 6 PRO 6 43 43 PRO PRO A . n A 1 7 VAL 7 44 44 VAL VAL A . n A 1 8 GLU 8 45 45 GLU GLU A . n A 1 9 THR 9 46 46 THR THR A . n A 1 10 GLU 10 47 47 GLU GLU A . n A 1 11 ASN 11 48 48 ASN ASN A . n A 1 12 ILE 12 49 49 ILE ILE A . n A 1 13 ALA 13 50 50 ALA ALA A . n A 1 14 ARG 14 51 51 ARG ARG A . n A 1 15 GLY 15 52 52 GLY GLY A . n A 1 16 LYS 16 53 53 LYS LYS A . n A 1 17 GLN 17 54 54 GLN GLN A . n A 1 18 ALA 18 55 55 ALA ALA A . n A 1 19 SER 19 56 56 SER SER A . n A 1 20 GLN 20 57 57 GLN GLN A . n A 1 21 SER 21 58 58 SER SER A . n A 1 22 SER 22 59 59 SER SER A . n A 1 23 THR 23 60 60 THR THR A . n A 1 24 ALA 24 61 61 ALA ALA A . n A 1 25 HIS 25 62 62 HIS HIS A . n A 1 26 GLY 26 63 63 GLY GLY A . n A 1 27 GLY 27 64 64 GLY GLY A . n A 1 28 ALA 28 65 65 ALA ALA A . n A 1 29 ALA 29 66 66 ALA ALA A . n A 1 30 THR 30 67 67 THR THR A . n A 1 31 ARG 31 68 68 ARG ARG A . n A 1 32 ALA 32 69 69 ALA ALA A . n A 1 33 VAL 33 70 70 VAL VAL A . n A 1 34 ASP 34 71 71 ASP ASP A . n A 1 35 GLY 35 72 72 GLY GLY A . n A 1 36 ASN 36 73 73 ASN ASN A . n A 1 37 VAL 37 74 74 VAL VAL A . n A 1 38 ASP 38 75 75 ASP ASP A . n A 1 39 SER 39 76 76 SER SER A . n A 1 40 ASP 40 77 77 ASP ASP A . n A 1 41 TYR 41 78 78 TYR TYR A . n A 1 42 GLY 42 79 79 GLY GLY A . n A 1 43 HIS 43 80 80 HIS HIS A . n A 1 44 HIS 44 81 81 HIS HIS A . n A 1 45 SER 45 82 82 SER SER A . n A 1 46 VAL 46 83 83 VAL VAL A . n A 1 47 THR 47 84 84 THR THR A . n A 1 48 HIS 48 85 85 HIS HIS A . n A 1 49 THR 49 86 86 THR THR A . n A 1 50 ASN 50 87 87 ASN ASN A . n A 1 51 PHE 51 88 88 PHE PHE A . n A 1 52 GLU 52 89 89 GLU GLU A . n A 1 53 ASP 53 90 90 ASP ASP A . n A 1 54 ASN 54 91 91 ASN ASN A . n A 1 55 ALA 55 92 92 ALA ALA A . n A 1 56 TRP 56 93 93 TRP TRP A . n A 1 57 TRP 57 94 94 TRP TRP A . n A 1 58 GLN 58 95 95 GLN GLN A . n A 1 59 VAL 59 96 96 VAL VAL A . n A 1 60 ASP 60 97 97 ASP ASP A . n A 1 61 LEU 61 98 98 LEU LEU A . n A 1 62 GLY 62 99 99 GLY GLY A . n A 1 63 LYS 63 100 100 LYS LYS A . n A 1 64 THR 64 101 101 THR THR A . n A 1 65 GLU 65 102 102 GLU GLU A . n A 1 66 ASN 66 103 103 ASN ASN A . n A 1 67 VAL 67 104 104 VAL VAL A . n A 1 68 GLY 68 105 105 GLY GLY A . n A 1 69 LYS 69 106 106 LYS LYS A . n A 1 70 VAL 70 107 107 VAL VAL A . n A 1 71 LYS 71 108 108 LYS LYS A . n A 1 72 LEU 72 109 109 LEU LEU A . n A 1 73 TYR 73 110 110 TYR TYR A . n A 1 74 ASN 74 111 111 ASN ASN A . n A 1 75 ARG 75 112 112 ARG ARG A . n A 1 76 GLY 76 113 113 GLY GLY A . n A 1 77 ASP 77 114 114 ASP ASP A . n A 1 78 GLY 78 115 115 GLY GLY A . n A 1 79 ASN 79 116 116 ASN ASN A . n A 1 80 VAL 80 117 117 VAL VAL A . n A 1 81 ALA 81 118 118 ALA ALA A . n A 1 82 ASN 82 119 119 ASN ASN A . n A 1 83 ARG 83 120 120 ARG ARG A . n A 1 84 LEU 84 121 121 LEU LEU A . n A 1 85 SER 85 122 122 SER SER A . n A 1 86 ASN 86 123 123 ASN ASN A . n A 1 87 PHE 87 124 124 PHE PHE A . n A 1 88 ASP 88 125 125 ASP ASP A . n A 1 89 VAL 89 126 126 VAL VAL A . n A 1 90 VAL 90 127 127 VAL VAL A . n A 1 91 LEU 91 128 128 LEU LEU A . n A 1 92 LEU 92 129 129 LEU LEU A . n A 1 93 ASN 93 130 130 ASN ASN A . n A 1 94 GLU 94 131 131 GLU GLU A . n A 1 95 ALA 95 132 132 ALA ALA A . n A 1 96 LYS 96 133 133 LYS LYS A . n A 1 97 GLN 97 134 134 GLN GLN A . n A 1 98 GLU 98 135 135 GLU GLU A . n A 1 99 VAL 99 136 136 VAL VAL A . n A 1 100 ALA 100 137 137 ALA ALA A . n A 1 101 ARG 101 138 138 ARG ARG A . n A 1 102 GLN 102 139 139 GLN GLN A . n A 1 103 HIS 103 140 140 HIS HIS A . n A 1 104 PHE 104 141 141 PHE PHE A . n A 1 105 ASP 105 142 142 ASP ASP A . n A 1 106 SER 106 143 143 SER SER A . n A 1 107 LEU 107 144 144 LEU LEU A . n A 1 108 ASN 108 145 145 ASN ASN A . n A 1 109 GLY 109 146 146 GLY GLY A . n A 1 110 LYS 110 147 147 LYS LYS A . n A 1 111 ALA 111 148 148 ALA ALA A . n A 1 112 GLU 112 149 149 GLU GLU A . n A 1 113 LEU 113 150 150 LEU LEU A . n A 1 114 GLU 114 151 151 GLU GLU A . n A 1 115 VAL 115 152 152 VAL VAL A . n A 1 116 PHE 116 153 153 PHE PHE A . n A 1 117 PHE 117 154 154 PHE PHE A . n A 1 118 THR 118 155 155 THR THR A . n A 1 119 ALA 119 156 156 ALA ALA A . n A 1 120 LYS 120 157 157 LYS LYS A . n A 1 121 ASP 121 158 158 ASP ASP A . n A 1 122 ALA 122 159 159 ALA ALA A . n A 1 123 ARG 123 160 160 ARG ARG A . n A 1 124 TYR 124 161 161 TYR TYR A . n A 1 125 VAL 125 162 162 VAL VAL A . n A 1 126 LYS 126 163 163 LYS LYS A . n A 1 127 VAL 127 164 164 VAL VAL A . n A 1 128 GLU 128 165 165 GLU GLU A . n A 1 129 LEU 129 166 166 LEU LEU A . n A 1 130 LYS 130 167 167 LYS LYS A . n A 1 131 THR 131 168 168 THR THR A . n A 1 132 LYS 132 169 169 LYS LYS A . n A 1 133 ASN 133 170 170 ASN ASN A . n A 1 134 THR 134 171 171 THR THR A . n A 1 135 PRO 135 172 172 PRO PRO A . n A 1 136 LEU 136 173 173 LEU LEU A . n A 1 137 SER 137 174 174 SER SER A . n A 1 138 LEU 138 175 175 LEU LEU A . n A 1 139 ALA 139 176 176 ALA ALA A . n A 1 140 GLU 140 177 177 GLU GLU A . n A 1 141 VAL 141 178 178 VAL VAL A . n A 1 142 GLU 142 179 179 GLU GLU A . n A 1 143 VAL 143 180 180 VAL VAL A . n A 1 144 PHE 144 181 181 PHE PHE A . n A 1 145 ARG 145 182 182 ARG ARG A . n A 1 146 SER 146 183 183 SER SER A . n A 1 147 ALA 147 184 184 ALA ALA A . n A 1 148 THR 148 185 ? ? ? A . n A 1 149 THR 149 186 ? ? ? A . n A 1 150 GLN 150 187 ? ? ? A . n A 1 151 VAL 151 188 ? ? ? A . n A 1 152 GLY 152 189 ? ? ? A . n A 1 153 CYS 153 190 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 201 202 MG MG A . D 3 MG 1 202 203 MG MG A . E 3 MG 1 203 204 MG MG A . F 4 CA 1 204 205 CA CA A . G 5 HOH 1 301 301 HOH HOH A . G 5 HOH 2 302 302 HOH HOH A . G 5 HOH 3 303 303 HOH HOH A . G 5 HOH 4 304 304 HOH HOH A . G 5 HOH 5 305 305 HOH HOH A . G 5 HOH 6 306 306 HOH HOH A . G 5 HOH 7 307 307 HOH HOH A . G 5 HOH 8 308 308 HOH HOH A . G 5 HOH 9 309 309 HOH HOH A . G 5 HOH 10 310 310 HOH HOH A . G 5 HOH 11 311 311 HOH HOH A . G 5 HOH 12 312 312 HOH HOH A . G 5 HOH 13 313 313 HOH HOH A . G 5 HOH 14 314 314 HOH HOH A . G 5 HOH 15 315 315 HOH HOH A . G 5 HOH 16 316 316 HOH HOH A . G 5 HOH 17 317 317 HOH HOH A . G 5 HOH 18 318 318 HOH HOH A . G 5 HOH 19 319 319 HOH HOH A . G 5 HOH 20 320 320 HOH HOH A . G 5 HOH 21 321 321 HOH HOH A . G 5 HOH 22 322 322 HOH HOH A . G 5 HOH 23 323 323 HOH HOH A . G 5 HOH 24 324 324 HOH HOH A . G 5 HOH 25 325 325 HOH HOH A . G 5 HOH 26 326 326 HOH HOH A . G 5 HOH 27 327 327 HOH HOH A . G 5 HOH 28 328 328 HOH HOH A . G 5 HOH 29 329 329 HOH HOH A . G 5 HOH 30 330 330 HOH HOH A . G 5 HOH 31 331 331 HOH HOH A . G 5 HOH 32 332 332 HOH HOH A . G 5 HOH 33 333 333 HOH HOH A . G 5 HOH 34 334 334 HOH HOH A . G 5 HOH 35 335 335 HOH HOH A . G 5 HOH 36 336 336 HOH HOH A . G 5 HOH 37 337 337 HOH HOH A . G 5 HOH 38 338 338 HOH HOH A . G 5 HOH 39 339 339 HOH HOH A . G 5 HOH 40 340 340 HOH HOH A . G 5 HOH 41 341 341 HOH HOH A . G 5 HOH 42 342 342 HOH HOH A . G 5 HOH 43 343 343 HOH HOH A . G 5 HOH 44 344 344 HOH HOH A . G 5 HOH 45 345 345 HOH HOH A . G 5 HOH 46 346 346 HOH HOH A . G 5 HOH 47 347 347 HOH HOH A . G 5 HOH 48 348 348 HOH HOH A . G 5 HOH 49 349 349 HOH HOH A . G 5 HOH 50 350 350 HOH HOH A . G 5 HOH 51 351 351 HOH HOH A . G 5 HOH 52 352 352 HOH HOH A . G 5 HOH 53 353 353 HOH HOH A . G 5 HOH 54 354 354 HOH HOH A . G 5 HOH 55 355 355 HOH HOH A . G 5 HOH 56 356 356 HOH HOH A . G 5 HOH 57 357 357 HOH HOH A . G 5 HOH 58 358 358 HOH HOH A . G 5 HOH 59 359 359 HOH HOH A . G 5 HOH 60 360 360 HOH HOH A . G 5 HOH 61 361 361 HOH HOH A . G 5 HOH 62 362 362 HOH HOH A . G 5 HOH 63 363 363 HOH HOH A . G 5 HOH 64 364 364 HOH HOH A . G 5 HOH 65 365 365 HOH HOH A . G 5 HOH 66 366 366 HOH HOH A . G 5 HOH 67 367 367 HOH HOH A . G 5 HOH 68 368 368 HOH HOH A . G 5 HOH 69 369 369 HOH HOH A . G 5 HOH 70 370 370 HOH HOH A . G 5 HOH 71 371 371 HOH HOH A . G 5 HOH 72 372 372 HOH HOH A . G 5 HOH 73 373 373 HOH HOH A . G 5 HOH 74 374 374 HOH HOH A . G 5 HOH 75 375 375 HOH HOH A . G 5 HOH 76 376 376 HOH HOH A . G 5 HOH 77 377 377 HOH HOH A . G 5 HOH 78 378 378 HOH HOH A . G 5 HOH 79 379 379 HOH HOH A . G 5 HOH 80 380 380 HOH HOH A . G 5 HOH 81 381 381 HOH HOH A . G 5 HOH 82 382 382 HOH HOH A . G 5 HOH 83 383 383 HOH HOH A . G 5 HOH 84 384 384 HOH HOH A . G 5 HOH 85 385 385 HOH HOH A . G 5 HOH 86 386 386 HOH HOH A . G 5 HOH 87 387 387 HOH HOH A . G 5 HOH 88 388 388 HOH HOH A . G 5 HOH 89 389 389 HOH HOH A . G 5 HOH 90 390 390 HOH HOH A . G 5 HOH 91 391 391 HOH HOH A . G 5 HOH 92 392 392 HOH HOH A . G 5 HOH 93 393 393 HOH HOH A . G 5 HOH 94 394 394 HOH HOH A . G 5 HOH 95 395 395 HOH HOH A . G 5 HOH 96 396 396 HOH HOH A . G 5 HOH 97 397 397 HOH HOH A . G 5 HOH 98 398 399 HOH HOH A . G 5 HOH 99 399 400 HOH HOH A . G 5 HOH 100 400 401 HOH HOH A . G 5 HOH 101 401 402 HOH HOH A . G 5 HOH 102 402 403 HOH HOH A . G 5 HOH 103 403 404 HOH HOH A . G 5 HOH 104 404 405 HOH HOH A . G 5 HOH 105 405 406 HOH HOH A . G 5 HOH 106 406 407 HOH HOH A . G 5 HOH 107 407 408 HOH HOH A . G 5 HOH 108 408 409 HOH HOH A . G 5 HOH 109 409 410 HOH HOH A . G 5 HOH 110 410 411 HOH HOH A . G 5 HOH 111 411 412 HOH HOH A . G 5 HOH 112 412 413 HOH HOH A . G 5 HOH 113 413 414 HOH HOH A . G 5 HOH 114 414 415 HOH HOH A . G 5 HOH 115 415 416 HOH HOH A . G 5 HOH 116 416 417 HOH HOH A . G 5 HOH 117 417 418 HOH HOH A . G 5 HOH 118 418 419 HOH HOH A . G 5 HOH 119 419 420 HOH HOH A . G 5 HOH 120 420 421 HOH HOH A . G 5 HOH 121 421 422 HOH HOH A . G 5 HOH 122 422 423 HOH HOH A . G 5 HOH 123 423 424 HOH HOH A . G 5 HOH 124 424 425 HOH HOH A . G 5 HOH 125 425 426 HOH HOH A . G 5 HOH 126 426 427 HOH HOH A . G 5 HOH 127 427 428 HOH HOH A . G 5 HOH 128 428 429 HOH HOH A . G 5 HOH 129 429 430 HOH HOH A . G 5 HOH 130 430 431 HOH HOH A . G 5 HOH 131 431 432 HOH HOH A . G 5 HOH 132 432 433 HOH HOH A . G 5 HOH 133 433 434 HOH HOH A . G 5 HOH 134 434 435 HOH HOH A . G 5 HOH 135 435 436 HOH HOH A . G 5 HOH 136 436 437 HOH HOH A . G 5 HOH 137 437 438 HOH HOH A . G 5 HOH 138 438 439 HOH HOH A . G 5 HOH 139 439 440 HOH HOH A . G 5 HOH 140 440 441 HOH HOH A . G 5 HOH 141 441 442 HOH HOH A . G 5 HOH 142 442 443 HOH HOH A . G 5 HOH 143 443 444 HOH HOH A . G 5 HOH 144 444 445 HOH HOH A . G 5 HOH 145 445 446 HOH HOH A . G 5 HOH 146 446 447 HOH HOH A . G 5 HOH 147 447 448 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900123 _pdbx_molecule_features.name 'Lewis B antigen, beta anomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details 'oligosaccharide with branches' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900123 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 77.3 ? 2 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ASN 36 ? A ASN 73 ? 1_555 166.1 ? 3 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ASN 36 ? A ASN 73 ? 1_555 92.4 ? 4 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 103.6 ? 5 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 69.7 ? 6 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 81.1 ? 7 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 78.5 ? 8 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 127.4 ? 9 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 115.4 ? 10 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 71.8 ? 11 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 94.2 ? 12 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 155.1 ? 13 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 91.3 ? 14 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 135.2 ? 15 O ? A SER 45 ? A SER 82 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 72.1 ? 16 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 88.9 ? 17 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 75.4 ? 18 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 79.3 ? 19 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 138.9 ? 20 O ? A SER 45 ? A SER 82 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 149.2 ? 21 O ? A ALA 139 ? A ALA 176 ? 1_555 CA ? F CA . ? A CA 204 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 81.1 ? 22 OD2 ? A ASP 60 ? A ASP 97 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 375 ? 1_555 91.1 ? 23 OD2 ? A ASP 60 ? A ASP 97 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 378 ? 1_555 166.4 ? 24 O ? G HOH . ? A HOH 375 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 378 ? 1_555 87.7 ? 25 OD2 ? A ASP 60 ? A ASP 97 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 383 ? 1_555 99.3 ? 26 O ? G HOH . ? A HOH 375 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 383 ? 1_555 89.7 ? 27 O ? G HOH . ? A HOH 378 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 383 ? 1_555 94.2 ? 28 OD2 ? A ASP 60 ? A ASP 97 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 417 ? 1_555 79.1 ? 29 O ? G HOH . ? A HOH 375 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 417 ? 1_555 94.4 ? 30 O ? G HOH . ? A HOH 378 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 417 ? 1_555 87.5 ? 31 O ? G HOH . ? A HOH 383 ? 1_555 MG ? E MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 417 ? 1_555 175.6 ? 32 O ? G HOH . ? A HOH 399 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 434 ? 1_555 91.9 ? 33 O ? G HOH . ? A HOH 399 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 435 ? 1_555 93.0 ? 34 O ? G HOH . ? A HOH 434 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 435 ? 1_555 167.2 ? 35 O ? G HOH . ? A HOH 399 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 437 ? 1_555 92.1 ? 36 O ? G HOH . ? A HOH 434 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 437 ? 1_555 87.8 ? 37 O ? G HOH . ? A HOH 435 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 437 ? 1_555 103.8 ? 38 O ? G HOH . ? A HOH 399 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 438 ? 1_555 89.6 ? 39 O ? G HOH . ? A HOH 434 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 438 ? 1_555 77.9 ? 40 O ? G HOH . ? A HOH 435 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 438 ? 1_555 90.3 ? 41 O ? G HOH . ? A HOH 437 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? G HOH . ? A HOH 438 ? 1_555 165.7 ? 42 O ? G HOH . ? A HOH 331 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 332 ? 1_555 87.7 ? 43 O ? G HOH . ? A HOH 331 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 333 ? 1_555 90.3 ? 44 O ? G HOH . ? A HOH 332 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 333 ? 1_555 178.0 ? 45 O ? G HOH . ? A HOH 331 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 376 ? 1_555 88.1 ? 46 O ? G HOH . ? A HOH 332 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 376 ? 1_555 88.5 ? 47 O ? G HOH . ? A HOH 333 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 376 ? 1_555 92.1 ? 48 O ? G HOH . ? A HOH 331 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 432 ? 1_555 174.6 ? 49 O ? G HOH . ? A HOH 332 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 432 ? 1_555 87.8 ? 50 O ? G HOH . ? A HOH 333 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 432 ? 1_555 94.1 ? 51 O ? G HOH . ? A HOH 376 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 O ? G HOH . ? A HOH 432 ? 1_555 88.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-21 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Refinement description' 13 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' entity_name_com 7 4 'Structure model' pdbx_branch_scheme 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_molecule_features 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' pdbx_struct_assembly_gen 17 4 'Structure model' pdbx_struct_conn_angle 18 4 'Structure model' struct_asym 19 4 'Structure model' struct_conn 20 4 'Structure model' struct_ref_seq_dif 21 4 'Structure model' struct_site 22 4 'Structure model' struct_site_gen 23 5 'Structure model' chem_comp 24 5 'Structure model' chem_comp_atom 25 5 'Structure model' chem_comp_bond 26 5 'Structure model' database_2 27 5 'Structure model' pdbx_initial_refinement_model 28 5 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_atom_site.B_iso_or_equiv' 11 4 'Structure model' '_atom_site.Cartn_x' 12 4 'Structure model' '_atom_site.Cartn_y' 13 4 'Structure model' '_atom_site.Cartn_z' 14 4 'Structure model' '_atom_site.auth_asym_id' 15 4 'Structure model' '_atom_site.auth_atom_id' 16 4 'Structure model' '_atom_site.auth_comp_id' 17 4 'Structure model' '_atom_site.auth_seq_id' 18 4 'Structure model' '_atom_site.label_asym_id' 19 4 'Structure model' '_atom_site.label_atom_id' 20 4 'Structure model' '_atom_site.label_comp_id' 21 4 'Structure model' '_atom_site.label_entity_id' 22 4 'Structure model' '_atom_site.occupancy' 23 4 'Structure model' '_atom_site.type_symbol' 24 4 'Structure model' '_chem_comp.name' 25 4 'Structure model' '_chem_comp.type' 26 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 34 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 35 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 36 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 37 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 38 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 39 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 40 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 41 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 42 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 43 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 44 4 'Structure model' '_pdbx_struct_conn_angle.value' 45 4 'Structure model' '_struct_conn.pdbx_dist_value' 46 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 47 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 48 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 49 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 50 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 51 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 52 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 53 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 54 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 55 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 56 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 57 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 58 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 59 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 60 4 'Structure model' '_struct_ref_seq_dif.details' 61 5 'Structure model' '_chem_comp.pdbx_synonyms' 62 5 'Structure model' '_database_2.pdbx_DOI' 63 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? # _pdbx_entry_details.entry_id 4GWJ _pdbx_entry_details.nonpolymer_details 'THE TETRASACCHARIDE LEWIS B IS COMPOSED OF RESIDUES A 205-208.' _pdbx_entry_details.sequence_details ;THE SEQUENCE WAS DERIVED FROM THE PUBLISHED PROTEIN SEQUENCE PUBLISHED BY FARRAND ET AL. (BIOCHEMISTRY, VOL. 47, 2008). AMINO ACIDS 67 AND 158 ARE THREONINE AND ASPARTATE, RESPECTIVELY. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 75 ? ? CG A ASP 75 ? ? OD2 A ASP 75 ? ? 125.68 118.30 7.38 0.90 N 2 1 CZ A TYR 78 ? ? CE2 A TYR 78 ? ? CD2 A TYR 78 ? ? 113.09 119.80 -6.71 0.90 N 3 1 NE A ARG 112 ? ? CZ A ARG 112 ? ? NH2 A ARG 112 ? ? 114.54 120.30 -5.76 0.50 N 4 1 OE1 A GLU 177 ? ? CD A GLU 177 ? ? OE2 A GLU 177 ? ? 130.82 123.30 7.52 1.20 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 145 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 71.47 _pdbx_validate_torsion.psi 41.99 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 0 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id ASN _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 119 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id ASN _pdbx_unobs_or_zero_occ_atoms.label_seq_id 82 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 38 ? A GLU 1 2 1 Y 1 A GLN 39 ? A GLN 2 3 1 Y 1 A GLY 40 ? A GLY 3 4 1 Y 1 A ASN 41 ? A ASN 4 5 1 Y 1 A ARG 42 ? A ARG 5 6 1 Y 1 A THR 185 ? A THR 148 7 1 Y 1 A THR 186 ? A THR 149 8 1 Y 1 A GLN 187 ? A GLN 150 9 1 Y 1 A VAL 188 ? A VAL 151 10 1 Y 1 A GLY 189 ? A GLY 152 11 1 Y 1 A CYS 190 ? A CYS 153 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 FUC C1 C N R 89 FUC C2 C N S 90 FUC C3 C N R 91 FUC C4 C N S 92 FUC C5 C N S 93 FUC C6 C N N 94 FUC O1 O N N 95 FUC O2 O N N 96 FUC O3 O N N 97 FUC O4 O N N 98 FUC O5 O N N 99 FUC H1 H N N 100 FUC H2 H N N 101 FUC H3 H N N 102 FUC H4 H N N 103 FUC H5 H N N 104 FUC H61 H N N 105 FUC H62 H N N 106 FUC H63 H N N 107 FUC HO1 H N N 108 FUC HO2 H N N 109 FUC HO3 H N N 110 FUC HO4 H N N 111 GAL C1 C N R 112 GAL C2 C N R 113 GAL C3 C N S 114 GAL C4 C N R 115 GAL C5 C N R 116 GAL C6 C N N 117 GAL O1 O N N 118 GAL O2 O N N 119 GAL O3 O N N 120 GAL O4 O N N 121 GAL O5 O N N 122 GAL O6 O N N 123 GAL H1 H N N 124 GAL H2 H N N 125 GAL H3 H N N 126 GAL H4 H N N 127 GAL H5 H N N 128 GAL H61 H N N 129 GAL H62 H N N 130 GAL HO1 H N N 131 GAL HO2 H N N 132 GAL HO3 H N N 133 GAL HO4 H N N 134 GAL HO6 H N N 135 GLN N N N N 136 GLN CA C N S 137 GLN C C N N 138 GLN O O N N 139 GLN CB C N N 140 GLN CG C N N 141 GLN CD C N N 142 GLN OE1 O N N 143 GLN NE2 N N N 144 GLN OXT O N N 145 GLN H H N N 146 GLN H2 H N N 147 GLN HA H N N 148 GLN HB2 H N N 149 GLN HB3 H N N 150 GLN HG2 H N N 151 GLN HG3 H N N 152 GLN HE21 H N N 153 GLN HE22 H N N 154 GLN HXT H N N 155 GLU N N N N 156 GLU CA C N S 157 GLU C C N N 158 GLU O O N N 159 GLU CB C N N 160 GLU CG C N N 161 GLU CD C N N 162 GLU OE1 O N N 163 GLU OE2 O N N 164 GLU OXT O N N 165 GLU H H N N 166 GLU H2 H N N 167 GLU HA H N N 168 GLU HB2 H N N 169 GLU HB3 H N N 170 GLU HG2 H N N 171 GLU HG3 H N N 172 GLU HE2 H N N 173 GLU HXT H N N 174 GLY N N N N 175 GLY CA C N N 176 GLY C C N N 177 GLY O O N N 178 GLY OXT O N N 179 GLY H H N N 180 GLY H2 H N N 181 GLY HA2 H N N 182 GLY HA3 H N N 183 GLY HXT H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MG MG MG N N 278 NAG C1 C N R 279 NAG C2 C N R 280 NAG C3 C N R 281 NAG C4 C N S 282 NAG C5 C N R 283 NAG C6 C N N 284 NAG C7 C N N 285 NAG C8 C N N 286 NAG N2 N N N 287 NAG O1 O N N 288 NAG O3 O N N 289 NAG O4 O N N 290 NAG O5 O N N 291 NAG O6 O N N 292 NAG O7 O N N 293 NAG H1 H N N 294 NAG H2 H N N 295 NAG H3 H N N 296 NAG H4 H N N 297 NAG H5 H N N 298 NAG H61 H N N 299 NAG H62 H N N 300 NAG H81 H N N 301 NAG H82 H N N 302 NAG H83 H N N 303 NAG HN2 H N N 304 NAG HO1 H N N 305 NAG HO3 H N N 306 NAG HO4 H N N 307 NAG HO6 H N N 308 PHE N N N N 309 PHE CA C N S 310 PHE C C N N 311 PHE O O N N 312 PHE CB C N N 313 PHE CG C Y N 314 PHE CD1 C Y N 315 PHE CD2 C Y N 316 PHE CE1 C Y N 317 PHE CE2 C Y N 318 PHE CZ C Y N 319 PHE OXT O N N 320 PHE H H N N 321 PHE H2 H N N 322 PHE HA H N N 323 PHE HB2 H N N 324 PHE HB3 H N N 325 PHE HD1 H N N 326 PHE HD2 H N N 327 PHE HE1 H N N 328 PHE HE2 H N N 329 PHE HZ H N N 330 PHE HXT H N N 331 PRO N N N N 332 PRO CA C N S 333 PRO C C N N 334 PRO O O N N 335 PRO CB C N N 336 PRO CG C N N 337 PRO CD C N N 338 PRO OXT O N N 339 PRO H H N N 340 PRO HA H N N 341 PRO HB2 H N N 342 PRO HB3 H N N 343 PRO HG2 H N N 344 PRO HG3 H N N 345 PRO HD2 H N N 346 PRO HD3 H N N 347 PRO HXT H N N 348 SER N N N N 349 SER CA C N S 350 SER C C N N 351 SER O O N N 352 SER CB C N N 353 SER OG O N N 354 SER OXT O N N 355 SER H H N N 356 SER H2 H N N 357 SER HA H N N 358 SER HB2 H N N 359 SER HB3 H N N 360 SER HG H N N 361 SER HXT H N N 362 THR N N N N 363 THR CA C N S 364 THR C C N N 365 THR O O N N 366 THR CB C N R 367 THR OG1 O N N 368 THR CG2 C N N 369 THR OXT O N N 370 THR H H N N 371 THR H2 H N N 372 THR HA H N N 373 THR HB H N N 374 THR HG1 H N N 375 THR HG21 H N N 376 THR HG22 H N N 377 THR HG23 H N N 378 THR HXT H N N 379 TRP N N N N 380 TRP CA C N S 381 TRP C C N N 382 TRP O O N N 383 TRP CB C N N 384 TRP CG C Y N 385 TRP CD1 C Y N 386 TRP CD2 C Y N 387 TRP NE1 N Y N 388 TRP CE2 C Y N 389 TRP CE3 C Y N 390 TRP CZ2 C Y N 391 TRP CZ3 C Y N 392 TRP CH2 C Y N 393 TRP OXT O N N 394 TRP H H N N 395 TRP H2 H N N 396 TRP HA H N N 397 TRP HB2 H N N 398 TRP HB3 H N N 399 TRP HD1 H N N 400 TRP HE1 H N N 401 TRP HE3 H N N 402 TRP HZ2 H N N 403 TRP HZ3 H N N 404 TRP HH2 H N N 405 TRP HXT H N N 406 TYR N N N N 407 TYR CA C N S 408 TYR C C N N 409 TYR O O N N 410 TYR CB C N N 411 TYR CG C Y N 412 TYR CD1 C Y N 413 TYR CD2 C Y N 414 TYR CE1 C Y N 415 TYR CE2 C Y N 416 TYR CZ C Y N 417 TYR OH O N N 418 TYR OXT O N N 419 TYR H H N N 420 TYR H2 H N N 421 TYR HA H N N 422 TYR HB2 H N N 423 TYR HB3 H N N 424 TYR HD1 H N N 425 TYR HD2 H N N 426 TYR HE1 H N N 427 TYR HE2 H N N 428 TYR HH H N N 429 TYR HXT H N N 430 VAL N N N N 431 VAL CA C N S 432 VAL C C N N 433 VAL O O N N 434 VAL CB C N N 435 VAL CG1 C N N 436 VAL CG2 C N N 437 VAL OXT O N N 438 VAL H H N N 439 VAL H2 H N N 440 VAL HA H N N 441 VAL HB H N N 442 VAL HG11 H N N 443 VAL HG12 H N N 444 VAL HG13 H N N 445 VAL HG21 H N N 446 VAL HG22 H N N 447 VAL HG23 H N N 448 VAL HXT H N N 449 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FUC C1 C2 sing N N 83 FUC C1 O1 sing N N 84 FUC C1 O5 sing N N 85 FUC C1 H1 sing N N 86 FUC C2 C3 sing N N 87 FUC C2 O2 sing N N 88 FUC C2 H2 sing N N 89 FUC C3 C4 sing N N 90 FUC C3 O3 sing N N 91 FUC C3 H3 sing N N 92 FUC C4 C5 sing N N 93 FUC C4 O4 sing N N 94 FUC C4 H4 sing N N 95 FUC C5 C6 sing N N 96 FUC C5 O5 sing N N 97 FUC C5 H5 sing N N 98 FUC C6 H61 sing N N 99 FUC C6 H62 sing N N 100 FUC C6 H63 sing N N 101 FUC O1 HO1 sing N N 102 FUC O2 HO2 sing N N 103 FUC O3 HO3 sing N N 104 FUC O4 HO4 sing N N 105 GAL C1 C2 sing N N 106 GAL C1 O1 sing N N 107 GAL C1 O5 sing N N 108 GAL C1 H1 sing N N 109 GAL C2 C3 sing N N 110 GAL C2 O2 sing N N 111 GAL C2 H2 sing N N 112 GAL C3 C4 sing N N 113 GAL C3 O3 sing N N 114 GAL C3 H3 sing N N 115 GAL C4 C5 sing N N 116 GAL C4 O4 sing N N 117 GAL C4 H4 sing N N 118 GAL C5 C6 sing N N 119 GAL C5 O5 sing N N 120 GAL C5 H5 sing N N 121 GAL C6 O6 sing N N 122 GAL C6 H61 sing N N 123 GAL C6 H62 sing N N 124 GAL O1 HO1 sing N N 125 GAL O2 HO2 sing N N 126 GAL O3 HO3 sing N N 127 GAL O4 HO4 sing N N 128 GAL O6 HO6 sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 NAG C1 C2 sing N N 265 NAG C1 O1 sing N N 266 NAG C1 O5 sing N N 267 NAG C1 H1 sing N N 268 NAG C2 C3 sing N N 269 NAG C2 N2 sing N N 270 NAG C2 H2 sing N N 271 NAG C3 C4 sing N N 272 NAG C3 O3 sing N N 273 NAG C3 H3 sing N N 274 NAG C4 C5 sing N N 275 NAG C4 O4 sing N N 276 NAG C4 H4 sing N N 277 NAG C5 C6 sing N N 278 NAG C5 O5 sing N N 279 NAG C5 H5 sing N N 280 NAG C6 O6 sing N N 281 NAG C6 H61 sing N N 282 NAG C6 H62 sing N N 283 NAG C7 C8 sing N N 284 NAG C7 N2 sing N N 285 NAG C7 O7 doub N N 286 NAG C8 H81 sing N N 287 NAG C8 H82 sing N N 288 NAG C8 H83 sing N N 289 NAG N2 HN2 sing N N 290 NAG O1 HO1 sing N N 291 NAG O3 HO3 sing N N 292 NAG O4 HO4 sing N N 293 NAG O6 HO6 sing N N 294 PHE N CA sing N N 295 PHE N H sing N N 296 PHE N H2 sing N N 297 PHE CA C sing N N 298 PHE CA CB sing N N 299 PHE CA HA sing N N 300 PHE C O doub N N 301 PHE C OXT sing N N 302 PHE CB CG sing N N 303 PHE CB HB2 sing N N 304 PHE CB HB3 sing N N 305 PHE CG CD1 doub Y N 306 PHE CG CD2 sing Y N 307 PHE CD1 CE1 sing Y N 308 PHE CD1 HD1 sing N N 309 PHE CD2 CE2 doub Y N 310 PHE CD2 HD2 sing N N 311 PHE CE1 CZ doub Y N 312 PHE CE1 HE1 sing N N 313 PHE CE2 CZ sing Y N 314 PHE CE2 HE2 sing N N 315 PHE CZ HZ sing N N 316 PHE OXT HXT sing N N 317 PRO N CA sing N N 318 PRO N CD sing N N 319 PRO N H sing N N 320 PRO CA C sing N N 321 PRO CA CB sing N N 322 PRO CA HA sing N N 323 PRO C O doub N N 324 PRO C OXT sing N N 325 PRO CB CG sing N N 326 PRO CB HB2 sing N N 327 PRO CB HB3 sing N N 328 PRO CG CD sing N N 329 PRO CG HG2 sing N N 330 PRO CG HG3 sing N N 331 PRO CD HD2 sing N N 332 PRO CD HD3 sing N N 333 PRO OXT HXT sing N N 334 SER N CA sing N N 335 SER N H sing N N 336 SER N H2 sing N N 337 SER CA C sing N N 338 SER CA CB sing N N 339 SER CA HA sing N N 340 SER C O doub N N 341 SER C OXT sing N N 342 SER CB OG sing N N 343 SER CB HB2 sing N N 344 SER CB HB3 sing N N 345 SER OG HG sing N N 346 SER OXT HXT sing N N 347 THR N CA sing N N 348 THR N H sing N N 349 THR N H2 sing N N 350 THR CA C sing N N 351 THR CA CB sing N N 352 THR CA HA sing N N 353 THR C O doub N N 354 THR C OXT sing N N 355 THR CB OG1 sing N N 356 THR CB CG2 sing N N 357 THR CB HB sing N N 358 THR OG1 HG1 sing N N 359 THR CG2 HG21 sing N N 360 THR CG2 HG22 sing N N 361 THR CG2 HG23 sing N N 362 THR OXT HXT sing N N 363 TRP N CA sing N N 364 TRP N H sing N N 365 TRP N H2 sing N N 366 TRP CA C sing N N 367 TRP CA CB sing N N 368 TRP CA HA sing N N 369 TRP C O doub N N 370 TRP C OXT sing N N 371 TRP CB CG sing N N 372 TRP CB HB2 sing N N 373 TRP CB HB3 sing N N 374 TRP CG CD1 doub Y N 375 TRP CG CD2 sing Y N 376 TRP CD1 NE1 sing Y N 377 TRP CD1 HD1 sing N N 378 TRP CD2 CE2 doub Y N 379 TRP CD2 CE3 sing Y N 380 TRP NE1 CE2 sing Y N 381 TRP NE1 HE1 sing N N 382 TRP CE2 CZ2 sing Y N 383 TRP CE3 CZ3 doub Y N 384 TRP CE3 HE3 sing N N 385 TRP CZ2 CH2 doub Y N 386 TRP CZ2 HZ2 sing N N 387 TRP CZ3 CH2 sing Y N 388 TRP CZ3 HZ3 sing N N 389 TRP CH2 HH2 sing N N 390 TRP OXT HXT sing N N 391 TYR N CA sing N N 392 TYR N H sing N N 393 TYR N H2 sing N N 394 TYR CA C sing N N 395 TYR CA CB sing N N 396 TYR CA HA sing N N 397 TYR C O doub N N 398 TYR C OXT sing N N 399 TYR CB CG sing N N 400 TYR CB HB2 sing N N 401 TYR CB HB3 sing N N 402 TYR CG CD1 doub Y N 403 TYR CG CD2 sing Y N 404 TYR CD1 CE1 sing Y N 405 TYR CD1 HD1 sing N N 406 TYR CD2 CE2 doub Y N 407 TYR CD2 HD2 sing N N 408 TYR CE1 CZ doub Y N 409 TYR CE1 HE1 sing N N 410 TYR CE2 CZ sing Y N 411 TYR CE2 HE2 sing N N 412 TYR CZ OH sing N N 413 TYR OH HH sing N N 414 TYR OXT HXT sing N N 415 VAL N CA sing N N 416 VAL N H sing N N 417 VAL N H2 sing N N 418 VAL CA C sing N N 419 VAL CA CB sing N N 420 VAL CA HA sing N N 421 VAL C O doub N N 422 VAL C OXT sing N N 423 VAL CB CG1 sing N N 424 VAL CB CG2 sing N N 425 VAL CB HB sing N N 426 VAL CG1 HG11 sing N N 427 VAL CG1 HG12 sing N N 428 VAL CG1 HG13 sing N N 429 VAL CG2 HG21 sing N N 430 VAL CG2 HG22 sing N N 431 VAL CG2 HG23 sing N N 432 VAL OXT HXT sing N N 433 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 1003 n B 2 GAL 2 B GAL 2 B GAL 1002 n B 2 FUC 3 B FUC 3 B FUC 1001 n B 2 FUC 4 B FUC 4 B FUC 1004 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-3/a3-b1_a4-d1_b2-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(3+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}[(4+1)][a-L-Fucp]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 NAG O3 HO3 sing ? 2 2 3 FUC C1 O1 2 GAL O2 HO2 sing ? 3 2 4 FUC C1 O1 1 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GAL 2 n 2 FUC 3 n 2 FUC 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'CALCIUM ION' CA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4GWI _pdbx_initial_refinement_model.details 'PDB ENTRY 4GWI' #