HEADER HYDROLASE 03-SEP-12 4GWN TITLE CRYSTAL STRUCTURE OF HUMAN MATURE MEPRIN BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEPRIN A SUBUNIT BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE MEPRIN BETA ECTOMOIETY, UNP RESIDUES 62-614; COMPND 5 SYNONYM: ENDOPEPTIDASE-2, MEPRIN B, N-BENZOYL-L-TYROSYL-P-AMINO- COMPND 6 BENZOIC ACID HYDROLASE SUBUNIT BETA, PABA PEPTIDE HYDROLASE, PPH COMPND 7 BETA; COMPND 8 EC: 3.4.24.63; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEP1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS MULTIDOMAIN STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.L.AROLAS,C.BRODER,T.JEFFERSON,T.GUEVARA,E.E.STERCHI,W.BODE, AUTHOR 2 W.STOCKER,C.BECKER-PAULY,F.X.GOMIS-RUTH REVDAT 5 08-NOV-23 4GWN 1 HETSYN REVDAT 4 29-JUL-20 4GWN 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 15-NOV-17 4GWN 1 REMARK REVDAT 2 31-OCT-12 4GWN 1 JRNL REVDAT 1 19-SEP-12 4GWN 0 JRNL AUTH J.L.AROLAS,C.BRODER,T.JEFFERSON,T.GUEVARA,E.E.STERCHI, JRNL AUTH 2 W.BODE,W.STOCKER,C.BECKER-PAULY,F.X.GOMIS-RUTH JRNL TITL STRUCTURAL BASIS FOR THE SHEDDASE FUNCTION OF HUMAN MEPRIN JRNL TITL 2 BETA METALLOPROTEINASE AT THE PLASMA MEMBRANE JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 16131 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22988105 JRNL DOI 10.1073/PNAS.1211076109 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.960 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2723 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2572 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2624 REMARK 3 BIN R VALUE (WORKING SET) : 0.2556 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.64 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 99 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 327 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 22.96920 REMARK 3 B22 (A**2) : 22.96920 REMARK 3 B33 (A**2) : -45.93850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.832 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4734 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6463 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2185 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 118 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 668 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4734 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 687 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5133 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|62 - A|259 A|701 - A|701 A|702 - A|702 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.8874 -13.3178 15.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: -0.0307 REMARK 3 T33: 0.3591 T12: -0.2874 REMARK 3 T13: -0.1597 T23: -0.2417 REMARK 3 L TENSOR REMARK 3 L11: 1.5878 L22: 2.4718 REMARK 3 L33: 3.2763 L12: -0.6274 REMARK 3 L13: 0.0481 L23: 0.1918 REMARK 3 S TENSOR REMARK 3 S11: 0.5312 S12: -0.2637 S13: -0.1641 REMARK 3 S21: 0.0482 S22: 0.0279 S23: 0.4704 REMARK 3 S31: 0.4705 S32: -0.5479 S33: -0.5592 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|260 - A|427 } REMARK 3 ORIGIN FOR THE GROUP (A): 53.7171 19.7259 11.3466 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: -0.1869 REMARK 3 T33: 0.2172 T12: -0.2286 REMARK 3 T13: 0.2856 T23: -0.5590 REMARK 3 L TENSOR REMARK 3 L11: 7.1436 L22: 6.2722 REMARK 3 L33: 5.1650 L12: -1.4085 REMARK 3 L13: -1.3578 L23: 1.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.1775 S12: -0.3044 S13: 0.5825 REMARK 3 S21: 0.1434 S22: 0.2627 S23: -0.4512 REMARK 3 S31: -0.8398 S32: 0.4030 S33: -0.4402 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|428 - A|594 } REMARK 3 ORIGIN FOR THE GROUP (A): 51.1262 0.5239 34.0945 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: -0.0223 REMARK 3 T33: 0.1323 T12: -0.0603 REMARK 3 T13: 0.1817 T23: -0.4627 REMARK 3 L TENSOR REMARK 3 L11: 1.3031 L22: 1.4757 REMARK 3 L33: 6.9084 L12: -0.1016 REMARK 3 L13: -0.4289 L23: 0.2423 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.3532 S13: 0.0511 REMARK 3 S21: 0.1003 S22: 0.4083 S23: 0.1976 REMARK 3 S31: -0.2948 S32: 0.0812 S33: -0.3668 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|703 - A|728 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.3729 11.2924 29.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.5523 T22: 0.1376 REMARK 3 T33: 0.1913 T12: 0.0253 REMARK 3 T13: 0.2514 T23: -0.4128 REMARK 3 L TENSOR REMARK 3 L11: 1.0936 L22: 2.3134 REMARK 3 L33: 1.6831 L12: -1.1389 REMARK 3 L13: 0.7758 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.2626 S13: 0.3135 REMARK 3 S21: 0.1789 S22: -0.1361 S23: -0.0150 REMARK 3 S31: -0.4329 S32: 0.1301 S33: -0.0333 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|729 - A|729 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.6533 -18.3082 25.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: -0.0745 REMARK 3 T33: -0.0172 T12: 0.0201 REMARK 3 T13: -0.0290 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: -0.0037 L22: 0.0557 REMARK 3 L33: 0.0000 L12: -0.0129 REMARK 3 L13: 0.0058 L23: -0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.0004 S13: -0.0007 REMARK 3 S21: 0.0012 S22: 0.0003 S23: 0.0053 REMARK 3 S31: 0.0035 S32: 0.0002 S33: 0.0042 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2818 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18106 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(WT/VOL) PEG 3350, 0.2M SODIUM REMARK 280 MALONATE, 0.1M BIS-TRIS PROPANE, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.55000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 335.10000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 251.32500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 418.87500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.77500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 167.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 335.10000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 418.87500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 251.32500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 595 REMARK 465 ILE A 596 REMARK 465 GLN A 597 REMARK 465 LEU A 598 REMARK 465 THR A 599 REMARK 465 PRO A 600 REMARK 465 ALA A 601 REMARK 465 PRO A 602 REMARK 465 SER A 603 REMARK 465 VAL A 604 REMARK 465 GLN A 605 REMARK 465 ASP A 606 REMARK 465 LEU A 607 REMARK 465 CYS A 608 REMARK 465 SER A 609 REMARK 465 LYS A 610 REMARK 465 THR A 611 REMARK 465 THR A 612 REMARK 465 CYS A 613 REMARK 465 LYS A 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 215 108.86 -43.44 REMARK 500 SER A 257 -160.59 -126.32 REMARK 500 VAL A 272 60.21 38.57 REMARK 500 MET A 302 -58.37 -136.35 REMARK 500 GLN A 304 -64.43 -137.64 REMARK 500 CYS A 305 -28.74 -150.77 REMARK 500 GLN A 306 -67.30 75.49 REMARK 500 LEU A 412 -2.83 -147.76 REMARK 500 MET A 512 64.64 -109.11 REMARK 500 ASN A 528 85.48 -162.99 REMARK 500 ARG A 571 -131.09 47.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 701 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 152 NE2 REMARK 620 2 HIS A 156 NE2 72.8 REMARK 620 3 HIS A 162 NE2 77.7 74.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 266 O REMARK 620 2 GLU A 268 OE2 67.0 REMARK 620 3 ASP A 298 OD1 151.6 84.9 REMARK 620 4 SER A 300 OG 104.2 106.4 87.2 REMARK 620 5 PHE A 310 O 89.1 87.5 85.3 163.5 REMARK 620 6 ASP A 418 OD2 79.1 146.0 128.9 81.6 91.6 REMARK 620 7 ASP A 418 OD1 127.3 160.9 79.3 83.5 80.7 50.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GWM RELATED DB: PDB REMARK 900 THE ZYMOGEN OF THE SAME PROTEIN DBREF 4GWN A 62 614 UNP Q16820 MEP1B_HUMAN 62 614 SEQRES 1 A 553 ASN SER ILE ILE GLY GLU LYS TYR ARG TRP PRO HIS THR SEQRES 2 A 553 ILE PRO TYR VAL LEU GLU ASP SER LEU GLU MET ASN ALA SEQRES 3 A 553 LYS GLY VAL ILE LEU ASN ALA PHE GLU ARG TYR ARG LEU SEQRES 4 A 553 LYS THR CYS ILE ASP PHE LYS PRO TRP ALA GLY GLU THR SEQRES 5 A 553 ASN TYR ILE SER VAL PHE LYS GLY SER GLY CYS TRP SER SEQRES 6 A 553 SER VAL GLY ASN ARG ARG VAL GLY LYS GLN GLU LEU SER SEQRES 7 A 553 ILE GLY ALA ASN CYS ASP ARG ILE ALA THR VAL GLN HIS SEQRES 8 A 553 GLU PHE LEU HIS ALA LEU GLY PHE TRP HIS GLU GLN SER SEQRES 9 A 553 ARG SER ASP ARG ASP ASP TYR VAL ARG ILE MET TRP ASP SEQRES 10 A 553 ARG ILE LEU SER GLY ARG GLU HIS ASN PHE ASN THR TYR SEQRES 11 A 553 SER ASP ASP ILE SER ASP SER LEU ASN VAL PRO TYR ASP SEQRES 12 A 553 TYR THR SER VAL MET HIS TYR SER LYS THR ALA PHE GLN SEQRES 13 A 553 ASN GLY THR GLU PRO THR ILE VAL THR ARG ILE SER ASP SEQRES 14 A 553 PHE GLU ASP VAL ILE GLY GLN ARG MET ASP PHE SER ASP SEQRES 15 A 553 SER ASP LEU LEU LYS LEU ASN GLN LEU TYR ASN CYS SER SEQRES 16 A 553 SER SER LEU SER PHE MET ASP SER CYS SER PHE GLU LEU SEQRES 17 A 553 GLU ASN VAL CYS GLY MET ILE GLN SER SER GLY ASP ASN SEQRES 18 A 553 ALA ASP TRP GLN ARG VAL SER GLN VAL PRO ARG GLY PRO SEQRES 19 A 553 GLU SER ASP HIS SER ASN MET GLY GLN CYS GLN GLY SER SEQRES 20 A 553 GLY PHE PHE MET HIS PHE ASP SER SER SER VAL ASN VAL SEQRES 21 A 553 GLY ALA THR ALA VAL LEU GLU SER ARG THR LEU TYR PRO SEQRES 22 A 553 LYS ARG GLY PHE GLN CYS LEU GLN PHE TYR LEU TYR ASN SEQRES 23 A 553 SER GLY SER GLU SER ASP GLN LEU ASN ILE TYR ILE ARG SEQRES 24 A 553 GLU TYR SER ALA ASP ASN VAL ASP GLY ASN LEU THR LEU SEQRES 25 A 553 VAL GLU GLU ILE LYS GLU ILE PRO THR GLY SER TRP GLN SEQRES 26 A 553 LEU TYR HIS VAL THR LEU LYS VAL THR LYS LYS PHE ARG SEQRES 27 A 553 VAL VAL PHE GLU GLY ARG LYS GLY SER GLY ALA SER LEU SEQRES 28 A 553 GLY GLY LEU SER ILE ASP ASP ILE ASN LEU SER GLU THR SEQRES 29 A 553 ARG CYS PRO HIS HIS ILE TRP HIS ILE ARG ASN PHE THR SEQRES 30 A 553 GLN PHE ILE GLY SER PRO ASN GLY THR LEU TYR SER PRO SEQRES 31 A 553 PRO PHE TYR SER SER LYS GLY TYR ALA PHE GLN ILE TYR SEQRES 32 A 553 LEU ASN LEU ALA HIS VAL THR ASN ALA GLY ILE TYR PHE SEQRES 33 A 553 HIS LEU ILE SER GLY ALA ASN ASP ASP GLN LEU GLN TRP SEQRES 34 A 553 PRO CYS PRO TRP GLN GLN ALA THR MET THR LEU LEU ASP SEQRES 35 A 553 GLN ASN PRO ASP ILE ARG GLN ARG MET SER ASN GLN ARG SEQRES 36 A 553 SER ILE THR THR ASP PRO PHE MET THR THR ASP ASN GLY SEQRES 37 A 553 ASN TYR PHE TRP ASP ARG PRO SER LYS VAL GLY THR VAL SEQRES 38 A 553 ALA LEU PHE SER ASN GLY THR GLN PHE ARG ARG GLY GLY SEQRES 39 A 553 GLY TYR GLY THR SER ALA PHE ILE THR HIS GLU ARG LEU SEQRES 40 A 553 LYS SER ARG ASP PHE ILE LYS GLY ASP ASP VAL TYR ILE SEQRES 41 A 553 LEU LEU THR VAL GLU ASP ILE SER HIS LEU ASN SER THR SEQRES 42 A 553 GLN ILE GLN LEU THR PRO ALA PRO SER VAL GLN ASP LEU SEQRES 43 A 553 CYS SER LYS THR THR CYS LYS MODRES 4GWN ASN A 547 ASN GLYCOSYLATION SITE MODRES 4GWN ASN A 436 ASN GLYCOSYLATION SITE MODRES 4GWN ASN A 370 ASN GLYCOSYLATION SITE MODRES 4GWN ASN A 218 ASN GLYCOSYLATION SITE MODRES 4GWN ASN A 254 ASN GLYCOSYLATION SITE MODRES 4GWN ASN A 592 ASN GLYCOSYLATION SITE MODRES 4GWN ASN A 445 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET MAN D 7 11 HET MAN D 8 11 HET MAN D 9 11 HET MAN D 10 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET CD A 701 1 HET NA A 702 1 HET NAG A 712 14 HET NAG A 728 14 HET GOL A 729 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CD CADMIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 12(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 9(C6 H12 O6) FORMUL 3 FUC 3(C6 H12 O5) FORMUL 7 CD CD 2+ FORMUL 8 NA NA 1+ FORMUL 11 GOL C3 H8 O3 HELIX 1 1 GLU A 84 THR A 102 1 19 HELIX 2 2 ARG A 146 GLY A 159 1 14 HELIX 3 3 HIS A 162 ARG A 166 5 5 HELIX 4 4 ASP A 168 ASP A 171 5 4 HELIX 5 5 TRP A 177 ILE A 180 5 4 HELIX 6 6 ARG A 184 PHE A 188 5 5 HELIX 7 7 ILE A 228 GLU A 232 5 5 HELIX 8 8 SER A 242 ASN A 254 1 13 HELIX 9 9 ASN A 271 MET A 275 5 5 HELIX 10 10 ASN A 436 ILE A 441 5 6 HELIX 11 11 ALA A 483 LEU A 488 5 6 HELIX 12 12 ASP A 507 ARG A 511 5 5 HELIX 13 13 ARG A 535 GLY A 540 1 6 HELIX 14 14 HIS A 565 LYS A 569 1 5 HELIX 15 15 SER A 589 ASN A 592 5 4 SHEET 1 A 2 SER A 63 ILE A 64 0 SHEET 2 A 2 SER A 196 ASP A 197 -1 O ASP A 197 N SER A 63 SHEET 1 B 5 ASP A 105 PRO A 108 0 SHEET 2 B 5 THR A 74 LEU A 79 1 N ILE A 75 O ASP A 105 SHEET 3 B 5 TYR A 115 PHE A 119 1 O ILE A 116 N PRO A 76 SHEET 4 B 5 LYS A 135 ILE A 140 1 O GLN A 136 N SER A 117 SHEET 5 B 5 CYS A 124 SER A 126 -1 N TRP A 125 O SER A 139 SHEET 1 C 2 VAL A 173 ILE A 175 0 SHEET 2 C 2 ILE A 224 THR A 226 -1 O VAL A 225 N ARG A 174 SHEET 1 D 4 PHE A 261 CYS A 265 0 SHEET 2 D 4 GLY A 414 SER A 423 -1 O LEU A 422 N ASP A 263 SHEET 3 D 4 PHE A 311 ASP A 315 -1 N PHE A 314 O LEU A 415 SHEET 4 D 4 TRP A 285 VAL A 288 -1 N GLN A 286 O HIS A 313 SHEET 1 E 4 PHE A 261 CYS A 265 0 SHEET 2 E 4 GLY A 414 SER A 423 -1 O LEU A 422 N ASP A 263 SHEET 3 E 4 GLN A 339 ASN A 347 -1 N GLN A 342 O ASN A 421 SHEET 4 E 4 GLN A 386 LEU A 392 -1 O GLN A 386 N LEU A 345 SHEET 1 F 5 ILE A 276 SER A 278 0 SHEET 2 F 5 THR A 324 GLU A 328 -1 O GLU A 328 N ILE A 276 SHEET 3 F 5 PHE A 398 ARG A 405 -1 O PHE A 402 N LEU A 327 SHEET 4 F 5 GLN A 354 GLU A 361 -1 N ASN A 356 O GLU A 403 SHEET 5 F 5 ASN A 370 ILE A 377 -1 O ILE A 377 N LEU A 355 SHEET 1 G 4 HIS A 430 ILE A 434 0 SHEET 2 G 4 VAL A 579 ASP A 587 -1 O LEU A 583 N HIS A 430 SHEET 3 G 4 GLN A 495 LEU A 501 -1 N GLN A 496 O GLU A 586 SHEET 4 G 4 ASN A 514 THR A 519 -1 O ASN A 514 N LEU A 501 SHEET 1 H 3 THR A 447 TYR A 449 0 SHEET 2 H 3 ALA A 460 ASN A 466 -1 O LEU A 465 N LEU A 448 SHEET 3 H 3 PHE A 453 TYR A 454 -1 N PHE A 453 O PHE A 461 SHEET 1 I 5 THR A 447 TYR A 449 0 SHEET 2 I 5 ALA A 460 ASN A 466 -1 O LEU A 465 N LEU A 448 SHEET 3 I 5 ASN A 472 ILE A 480 -1 O ILE A 480 N ALA A 460 SHEET 4 I 5 GLN A 550 THR A 564 -1 O GLY A 554 N LEU A 479 SHEET 5 I 5 THR A 541 LEU A 544 -1 N THR A 541 O ARG A 553 SSBOND 1 CYS A 103 CYS A 255 1555 1555 2.04 SSBOND 2 CYS A 124 CYS A 144 1555 1555 2.04 SSBOND 3 CYS A 265 CYS A 273 1555 1555 2.04 SSBOND 4 CYS A 305 CYS A 305 1555 8555 2.04 SSBOND 5 CYS A 340 CYS A 427 1555 1555 2.06 LINK ND2 ASN A 218 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 254 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 370 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 436 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN A 445 C1 NAG A 712 1555 1555 1.44 LINK ND2 ASN A 547 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 592 C1 NAG A 728 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.43 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.40 LINK O3 BMA D 3 C1 MAN D 9 1555 1555 1.43 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.43 LINK O6 MAN D 4 C1 MAN D 7 1555 1555 1.39 LINK O2 MAN D 5 C1 MAN D 6 1555 1555 1.43 LINK O2 MAN D 7 C1 MAN D 8 1555 1555 1.42 LINK O2 MAN D 9 C1 MAN D 10 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.41 LINK NE2 HIS A 152 CD CD A 701 1555 1555 2.66 LINK NE2 HIS A 156 CD CD A 701 1555 1555 2.58 LINK NE2 HIS A 162 CD CD A 701 1555 1555 2.57 LINK O SER A 266 NA NA A 702 1555 1555 2.26 LINK OE2 GLU A 268 NA NA A 702 1555 1555 2.94 LINK OD1 ASP A 298 NA NA A 702 1555 1555 2.46 LINK OG SER A 300 NA NA A 702 1555 1555 2.24 LINK O PHE A 310 NA NA A 702 1555 1555 2.24 LINK OD2 ASP A 418 NA NA A 702 1555 1555 2.51 LINK OD1 ASP A 418 NA NA A 702 1555 1555 2.66 CISPEP 1 GLY A 294 PRO A 295 0 2.37 CISPEP 2 TRP A 490 PRO A 491 0 -0.75 CRYST1 74.960 74.960 502.650 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013340 0.007702 0.000000 0.00000 SCALE2 0.000000 0.015404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001989 0.00000