HEADER OXIDOREDUCTASE 04-SEP-12 4GXM TITLE OYE1-W116L IN COMPLEX WITH AROMATIC PRODUCT OF R-CARVONE DISMUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLD YELLOW ENZYME 1; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 GENE: OYE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENOATE REDUCTASE, OYE, CARVONE, ENANATIOCOMPLEMENTARITY, TIM BARREL, KEYWDS 2 FMN BINDING DOMAIN, NAD(P)H OXIDOREDUCTASE, FMN NAD(P)H, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.POMPEU,J.D.STEWART REVDAT 3 13-SEP-23 4GXM 1 REMARK SEQADV LINK REVDAT 2 09-OCT-13 4GXM 1 JRNL REMARK REVDAT 1 03-OCT-12 4GXM 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,J.D.STEWART JRNL TITL X‑RAY CRYSTALLOGRAPHY REVEALS HOW SUBTLE CHANGES JRNL TITL 2 CONTROL THE ORIENTATION OF SUBSTRATE BINDING IN AN ALKENE JRNL TITL 3 REDUCTASE JRNL REF ACS CATALYSIS V. 3 2376 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS400622E REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 87025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 8695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2374 - 4.2300 0.99 3015 336 0.1613 0.1692 REMARK 3 2 4.2300 - 3.3584 1.00 2898 321 0.1174 0.1396 REMARK 3 3 3.3584 - 2.9341 1.00 2852 318 0.1259 0.1535 REMARK 3 4 2.9341 - 2.6660 1.00 2829 313 0.1200 0.1283 REMARK 3 5 2.6660 - 2.4749 1.00 2830 314 0.1088 0.1332 REMARK 3 6 2.4749 - 2.3291 1.00 2801 313 0.1019 0.1316 REMARK 3 7 2.3291 - 2.2124 1.00 2802 310 0.0956 0.1301 REMARK 3 8 2.2124 - 2.1161 1.00 2781 309 0.0949 0.1191 REMARK 3 9 2.1161 - 2.0347 1.00 2791 311 0.0965 0.1242 REMARK 3 10 2.0347 - 1.9645 1.00 2762 307 0.0987 0.1238 REMARK 3 11 1.9645 - 1.9031 1.00 2793 310 0.1018 0.1391 REMARK 3 12 1.9031 - 1.8487 1.00 2784 309 0.0990 0.1326 REMARK 3 13 1.8487 - 1.8000 1.00 2742 304 0.0942 0.1198 REMARK 3 14 1.8000 - 1.7561 1.00 2800 311 0.0918 0.1369 REMARK 3 15 1.7561 - 1.7162 1.00 2751 306 0.0890 0.1190 REMARK 3 16 1.7162 - 1.6796 1.00 2766 308 0.0840 0.1174 REMARK 3 17 1.6796 - 1.6460 1.00 2738 304 0.0811 0.1175 REMARK 3 18 1.6460 - 1.6150 1.00 2779 309 0.0808 0.1210 REMARK 3 19 1.6150 - 1.5861 1.00 2706 300 0.0780 0.1249 REMARK 3 20 1.5861 - 1.5593 1.00 2795 311 0.0783 0.1283 REMARK 3 21 1.5593 - 1.5341 1.00 2726 302 0.0805 0.1282 REMARK 3 22 1.5341 - 1.5105 0.99 2752 305 0.0863 0.1402 REMARK 3 23 1.5105 - 1.4883 0.96 2598 289 0.0912 0.1380 REMARK 3 24 1.4883 - 1.4673 0.88 2442 268 0.0917 0.1298 REMARK 3 25 1.4673 - 1.4475 0.82 2249 251 0.0928 0.1320 REMARK 3 26 1.4475 - 1.4287 0.78 2146 237 0.0946 0.1443 REMARK 3 27 1.4287 - 1.4108 0.72 2008 223 0.0968 0.1550 REMARK 3 28 1.4108 - 1.3938 0.70 1915 209 0.0970 0.1491 REMARK 3 29 1.3938 - 1.3776 0.66 1786 199 0.1098 0.1702 REMARK 3 30 1.3776 - 1.3622 0.61 1693 188 0.1226 0.1799 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3478 REMARK 3 ANGLE : 1.442 4725 REMARK 3 CHIRALITY : 0.112 482 REMARK 3 PLANARITY : 0.009 619 REMARK 3 DIHEDRAL : 17.597 1332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 60.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 FOR SHELL : 3.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES, 35%PEG400, PH REMARK 280 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.46000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.56000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.19000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.56000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.73000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.19000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.56000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.73000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 415 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 867 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 869 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 884 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 944 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1112 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 977 O HOH A 990 8554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 156 57.84 -141.54 REMARK 500 ASP A 355 37.70 -98.04 REMARK 500 TYR A 382 -58.77 -128.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 403 REMARK 610 1PE A 406 REMARK 610 1PE A 409 REMARK 610 1PE A 410 REMARK 610 1PE A 413 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 837 O REMARK 620 2 HOH A 840 O 107.9 REMARK 620 3 HOH A 841 O 89.7 69.8 REMARK 620 4 HOH A 852 O 92.0 151.1 90.2 REMARK 620 5 HOH A1006 O 173.6 78.5 93.1 82.1 REMARK 620 6 HOH A1033 O 92.0 82.7 151.6 118.1 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 412 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 409 OH4 REMARK 620 2 1PE A 409 OH5 56.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 410 OH3 REMARK 620 2 1PE A 410 OH6 125.0 REMARK 620 3 1PE A 410 OH4 61.3 103.5 REMARK 620 4 1PE A 410 OH5 110.4 60.0 52.6 REMARK 620 5 HOH A 607 O 124.1 108.9 122.2 108.3 REMARK 620 6 HOH A 990 O 118.1 81.0 175.0 129.7 53.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 415 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 853 O REMARK 620 2 HOH A 862 O 92.7 REMARK 620 3 HOH A 867 O 88.0 90.7 REMARK 620 4 HOH A 869 O 92.0 89.3 180.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WV A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GBU RELATED DB: PDB REMARK 900 RELATED ID: 4GE8 RELATED DB: PDB REMARK 900 RELATED ID: 4GWE RELATED DB: PDB REMARK 900 RELATED ID: 3TX9 RELATED DB: PDB REMARK 900 RELATED ID: 3RND RELATED DB: PDB REMARK 900 RELATED ID: 4H4I RELATED DB: PDB REMARK 900 RELATED ID: 4H6K RELATED DB: PDB REMARK 900 RELATED ID: 4K7V RELATED DB: PDB REMARK 900 RELATED ID: 4K7Y RELATED DB: PDB REMARK 900 RELATED ID: 4K8E RELATED DB: PDB REMARK 900 RELATED ID: 4K8H RELATED DB: PDB DBREF 4GXM A 0 399 UNP Q02899 OYE1_SACPS 1 400 SEQADV 4GXM LEU A 116 UNP Q02899 TRP 117 ENGINEERED MUTATION SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU LEU SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET MG A 401 1 HET CL A 402 1 HET 1PE A 403 11 HET NA A 404 1 HET NA A 405 1 HET 1PE A 406 10 HET FMN A 407 31 HET CL A 408 1 HET 1PE A 409 8 HET 1PE A 410 13 HET NA A 411 1 HET NA A 412 1 HET 1PE A 413 8 HET 0WV A 414 11 HET MG A 415 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM 0WV 2-METHYL-5-(PROP-1-EN-2-YL)PHENOL HETSYN 1PE PEG400 HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 3 CL 2(CL 1-) FORMUL 4 1PE 5(C10 H22 O6) FORMUL 5 NA 4(NA 1+) FORMUL 8 FMN C17 H21 N4 O9 P FORMUL 15 0WV C10 H12 O FORMUL 17 HOH *633(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 76 GLY A 80 5 5 HELIX 4 4 SER A 90 LYS A 107 1 18 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PHE A 123 ASP A 130 1 8 HELIX 7 7 ASP A 144 ALA A 154 1 11 HELIX 8 8 THR A 162 ALA A 183 1 22 HELIX 9 9 TYR A 196 ASP A 203 1 8 HELIX 10 10 SER A 216 ALA A 221 1 6 HELIX 11 11 ALA A 221 GLY A 236 1 16 HELIX 12 12 VAL A 249 MET A 253 5 5 HELIX 13 13 SER A 254 GLU A 258 5 5 HELIX 14 14 GLY A 260 ALA A 278 1 19 HELIX 15 15 ASP A 310 TRP A 316 1 7 HELIX 16 16 HIS A 329 VAL A 337 1 9 HELIX 17 17 GLY A 347 ASN A 353 1 7 HELIX 18 18 ASP A 355 GLY A 363 1 9 HELIX 19 19 ASP A 370 PHE A 374 5 5 HELIX 20 20 THR A 387 LEU A 394 1 8 HELIX 21 21 GLY A 395 LYS A 399 5 5 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 O ASN A 25 N ILE A 22 SHEET 1 B 8 ALA A 31 VAL A 32 0 SHEET 2 B 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 B 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 B 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 B 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 B 8 PHE A 110 LEU A 116 1 N LEU A 115 O GLU A 189 SHEET 8 B 8 MET A 67 ILE A 69 1 N ILE A 68 O TRP A 112 SHEET 1 C 8 ALA A 31 VAL A 32 0 SHEET 2 C 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 C 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 C 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 C 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 C 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 C 8 PHE A 110 LEU A 116 1 N LEU A 115 O GLU A 189 SHEET 8 C 8 ALA A 73 PHE A 74 1 N ALA A 73 O LEU A 116 SHEET 1 D 2 ASP A 135 SER A 136 0 SHEET 2 D 2 HIS A 159 SER A 160 1 O HIS A 159 N SER A 136 LINK MG MG A 401 O HOH A 837 1555 1555 2.04 LINK MG MG A 401 O HOH A 840 1555 1555 2.57 LINK MG MG A 401 O HOH A 841 1555 1555 1.99 LINK MG MG A 401 O HOH A 852 1555 1555 2.10 LINK MG MG A 401 O HOH A1006 1555 1555 2.06 LINK MG MG A 401 O HOH A1033 1555 1555 1.84 LINK OH5 1PE A 403 NA NA A 405 1555 1555 2.94 LINK NA NA A 404 OH6 1PE A 406 1555 1555 3.14 LINK OH4 1PE A 409 NA NA A 412 1555 1555 3.06 LINK OH5 1PE A 409 NA NA A 412 1555 1555 3.12 LINK OH3 1PE A 410 NA NA A 411 1555 1555 2.45 LINK OH6 1PE A 410 NA NA A 411 1555 1555 2.71 LINK OH4 1PE A 410 NA NA A 411 1555 1555 2.94 LINK OH5 1PE A 410 NA NA A 411 1555 1555 3.18 LINK NA NA A 411 O HOH A 607 1555 1555 3.16 LINK NA NA A 411 O BHOH A 990 1555 1555 2.64 LINK MG MG A 415 O HOH A 853 1555 1555 2.07 LINK MG MG A 415 O HOH A 862 1555 1555 2.05 LINK MG MG A 415 O HOH A 867 1555 1555 2.06 LINK MG MG A 415 O HOH A 869 1555 1555 2.15 CISPEP 1 HIS A 43 PRO A 44 0 3.16 SITE 1 AC1 6 HOH A 837 HOH A 840 HOH A 841 HOH A 852 SITE 2 AC1 6 HOH A1006 HOH A1033 SITE 1 AC2 2 ASP A 83 ASN A 126 SITE 1 AC3 6 ASP A 51 TRP A 52 ASP A 358 GLU A 389 SITE 2 AC3 6 NA A 405 HOH A1018 SITE 1 AC4 3 GLN A 9 ALA A 10 1PE A 406 SITE 1 AC5 2 TRP A 52 1PE A 403 SITE 1 AC6 10 GLN A 9 ALA A 10 HIS A 43 ASP A 83 SITE 2 AC6 10 ASN A 84 ARG A 334 LYS A 362 GLY A 363 SITE 3 AC6 10 NA A 404 HOH A 993 SITE 1 AC7 21 PRO A 34 PRO A 35 LEU A 36 THR A 37 SITE 2 AC7 21 GLY A 72 GLN A 114 HIS A 191 ASN A 194 SITE 3 AC7 21 ARG A 243 PRO A 295 GLY A 324 ASN A 325 SITE 4 AC7 21 GLY A 347 ARG A 348 PHE A 374 TYR A 375 SITE 5 AC7 21 0WV A 414 HOH A 503 HOH A 504 HOH A 506 SITE 6 AC7 21 HOH A 515 SITE 1 AC8 1 LYS A 4 SITE 1 AC9 5 ASP A 370 HIS A 380 ASP A 384 NA A 412 SITE 2 AC9 5 HOH A 779 SITE 1 BC1 8 GLU A 305 GLY A 307 SER A 308 ASP A 310 SITE 2 BC1 8 TYR A 313 ARG A 322 ASP A 339 NA A 411 SITE 1 BC2 2 1PE A 410 HOH A 990 SITE 1 BC3 1 1PE A 409 SITE 1 BC4 8 TYR A 82 TYR A 196 PHE A 296 TYR A 375 SITE 2 BC4 8 HOH A1120 HOH A1121 HOH A1122 HOH A1123 SITE 1 BC5 8 THR A 37 HIS A 191 ASN A 194 TYR A 196 SITE 2 BC5 8 PRO A 295 PHE A 296 TYR A 375 FMN A 407 SITE 1 BC6 4 HOH A 853 HOH A 862 HOH A 867 HOH A 869 CRYST1 141.120 141.120 42.920 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023299 0.00000