HEADER HYDROLASE 05-SEP-12 4GYU TITLE CRYSTAL STRUCTURE OF NEW DELHI METALLO-BETA-LACTAMASE-1 A121F MUTANT TITLE 2 FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE NDM-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NDM-1, METALLO-BETA-LACTAMASE NDM-1; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, PROTEIN STRUCTURE INITIATIVE, STRUCTURES OF MTB KEYWDS 3 PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS, MTBI, KEYWDS 4 ALPHA-BETA-BETA-ALPHA FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,J.BABNIGG,T.A.BINKOWSKI,J.MIRE, AUTHOR 2 J.SACCHETTINI,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG),STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN AUTHOR 4 MTB INHIBITORS (MTBI) REVDAT 2 13-SEP-23 4GYU 1 REMARK SEQADV REVDAT 1 26-SEP-12 4GYU 0 JRNL AUTH Y.KIM,C.TESAR,R.JEDRZEJCZAK,J.BABNIGG,T.A.BINKOWSKI,J.MIRE, JRNL AUTH 2 J.SACCHETTINI,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF NEW DELHI METALLO-BETA-LACTAMASE-1 JRNL TITL 2 A121F MUTANT FROM KLEBSIELLA PNEUMONIAE JRNL REF TO BE PUBLISHED 2012 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_920) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 21999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9521 - 3.6055 1.00 2860 141 0.1654 0.2067 REMARK 3 2 3.6055 - 2.8620 1.00 2787 148 0.1513 0.1953 REMARK 3 3 2.8620 - 2.5003 1.00 2762 153 0.1519 0.2066 REMARK 3 4 2.5003 - 2.2717 1.00 2747 172 0.1425 0.1805 REMARK 3 5 2.2717 - 2.1088 1.00 2750 149 0.1359 0.1637 REMARK 3 6 2.1088 - 1.9845 1.00 2763 138 0.1357 0.1787 REMARK 3 7 1.9845 - 1.8851 0.85 2349 133 0.1416 0.2071 REMARK 3 8 1.8851 - 1.8031 0.68 1850 97 0.1751 0.2287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 52.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.58870 REMARK 3 B22 (A**2) : 3.58870 REMARK 3 B33 (A**2) : -7.17740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1892 REMARK 3 ANGLE : 1.235 2560 REMARK 3 CHIRALITY : 0.096 280 REMARK 3 PLANARITY : 0.006 337 REMARK 3 DIHEDRAL : 14.386 671 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 29:43) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7838 -38.5669 11.5073 REMARK 3 T TENSOR REMARK 3 T11: 0.1665 T22: 0.2321 REMARK 3 T33: 0.1561 T12: -0.0028 REMARK 3 T13: -0.0203 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.8160 L22: 0.8468 REMARK 3 L33: 1.8333 L12: 0.0399 REMARK 3 L13: 0.2845 L23: 0.8108 REMARK 3 S TENSOR REMARK 3 S11: 0.2118 S12: 0.0993 S13: -0.2419 REMARK 3 S21: -0.1453 S22: -0.1908 S23: -0.0009 REMARK 3 S31: 0.0027 S32: -0.3934 S33: -0.0360 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 44:70) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4639 -46.2345 -0.4536 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0826 REMARK 3 T33: 0.0555 T12: -0.0010 REMARK 3 T13: -0.0012 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.1634 L22: 1.0670 REMARK 3 L33: 1.3151 L12: -0.0675 REMARK 3 L13: -0.1335 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.1686 S13: 0.0214 REMARK 3 S21: -0.1983 S22: 0.0042 S23: -0.0279 REMARK 3 S31: 0.1032 S32: 0.0243 S33: 0.0492 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 71:94) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7492 -42.7952 3.6693 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.0901 REMARK 3 T33: 0.0642 T12: 0.0160 REMARK 3 T13: -0.0000 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.0971 L22: 1.0211 REMARK 3 L33: 1.7990 L12: -0.2174 REMARK 3 L13: -0.2044 L23: 0.3513 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.0580 S13: 0.0086 REMARK 3 S21: 0.1323 S22: 0.0110 S23: 0.0515 REMARK 3 S31: 0.0407 S32: -0.0382 S33: -0.0376 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 95:108) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8100 -52.5542 5.9793 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.0603 REMARK 3 T33: 0.0885 T12: -0.0081 REMARK 3 T13: 0.0178 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.4779 L22: 2.0967 REMARK 3 L33: 6.1235 L12: -0.2562 REMARK 3 L13: 1.5683 L23: 0.2034 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.1019 S13: -0.1656 REMARK 3 S21: 0.0130 S22: 0.1154 S23: -0.0040 REMARK 3 S31: 0.1136 S32: 0.0061 S33: -0.0441 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 109:152) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4599 -43.0637 0.1383 REMARK 3 T TENSOR REMARK 3 T11: 0.0830 T22: 0.0929 REMARK 3 T33: 0.1155 T12: 0.0043 REMARK 3 T13: -0.0069 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.4656 L22: 0.6872 REMARK 3 L33: 1.2984 L12: -0.4598 REMARK 3 L13: 1.1018 L23: -0.8524 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: 0.0957 S13: -0.2071 REMARK 3 S21: -0.0850 S22: 0.0033 S23: 0.1251 REMARK 3 S31: 0.1919 S32: 0.0852 S33: -0.1207 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 153:170) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1189 -33.3795 1.2799 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0525 REMARK 3 T33: 0.1205 T12: 0.0172 REMARK 3 T13: 0.0137 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.2091 L22: 2.2600 REMARK 3 L33: 1.3736 L12: 0.6942 REMARK 3 L13: 0.4858 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: -0.0679 S13: 0.1341 REMARK 3 S21: 0.0312 S22: 0.0443 S23: 0.1827 REMARK 3 S31: 0.1497 S32: -0.1513 S33: -0.0433 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 171:194) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6552 -30.4883 1.8277 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1020 REMARK 3 T33: 0.1213 T12: -0.0073 REMARK 3 T13: -0.0129 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.6118 L22: 1.1208 REMARK 3 L33: 0.2487 L12: -0.2282 REMARK 3 L13: 0.0399 L23: 0.5203 REMARK 3 S TENSOR REMARK 3 S11: -0.1053 S12: -0.0349 S13: 0.0491 REMARK 3 S21: 0.0173 S22: 0.0502 S23: 0.1058 REMARK 3 S31: -0.0586 S32: -0.0206 S33: 0.0428 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 195:215) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8869 -31.4232 -0.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.1095 REMARK 3 T33: 0.1142 T12: -0.0323 REMARK 3 T13: -0.0135 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.8711 L22: 1.6015 REMARK 3 L33: 2.5762 L12: 0.2775 REMARK 3 L13: -0.6539 L23: -1.0310 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.0356 S13: 0.0749 REMARK 3 S21: -0.0272 S22: 0.1491 S23: -0.1251 REMARK 3 S31: -0.1554 S32: 0.1720 S33: -0.1492 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 216:239) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8515 -27.0911 -12.1461 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.2390 REMARK 3 T33: 0.1313 T12: -0.0839 REMARK 3 T13: -0.0105 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 1.5339 L22: 1.9532 REMARK 3 L33: 2.2087 L12: -0.2362 REMARK 3 L13: 0.2651 L23: 0.8998 REMARK 3 S TENSOR REMARK 3 S11: -0.0862 S12: 0.5332 S13: 0.1350 REMARK 3 S21: -0.3740 S22: 0.1362 S23: 0.0250 REMARK 3 S31: -0.0716 S32: -0.0621 S33: -0.0054 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 240:255) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7171 -31.0787 -0.8985 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0906 REMARK 3 T33: 0.1210 T12: -0.0294 REMARK 3 T13: -0.0062 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.2985 L22: 2.6077 REMARK 3 L33: 0.0966 L12: -0.2167 REMARK 3 L13: -0.0735 L23: -0.3348 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.0297 S13: 0.1908 REMARK 3 S21: -0.0989 S22: 0.1169 S23: -0.1929 REMARK 3 S31: -0.0068 S32: 0.0880 S33: -0.0864 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 256:269) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6210 -24.5921 -12.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.2289 REMARK 3 T33: 0.1522 T12: -0.0976 REMARK 3 T13: 0.0098 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 3.3005 L22: 1.2122 REMARK 3 L33: 5.1887 L12: -0.3102 REMARK 3 L13: 2.4680 L23: -1.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: 0.8257 S13: 0.2040 REMARK 3 S21: -0.3185 S22: 0.3117 S23: 0.1354 REMARK 3 S31: -0.1671 S32: 0.0995 S33: -0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22017 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3Q6X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE:HCL PH 8.0 1.0 M REMARK 280 SODIUM CITRATE TRIBASIC, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.45267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.22633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.33950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.11317 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.56583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 28 REMARK 465 ARG A 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 153.83 71.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RKJ RELATED DB: PDB REMARK 900 NDM1, DELTA-38 CONSTRUCT REMARK 900 RELATED ID: 3RKK RELATED DB: PDB REMARK 900 NDM1, DELTA-36NY CONSTRUCT REMARK 900 RELATED ID: 3SBL RELATED DB: PDB REMARK 900 NDM1, DELTA-36NY CONSTRUCT, DIFFERENT CRYSTALS FORM REMARK 900 RELATED ID: 3SFP RELATED DB: PDB REMARK 900 NDM1, DELTA-36NY CONSTRUCT, ONE-ZN-BOUND REMARK 900 RELATED ID: 3SRX RELATED DB: PDB REMARK 900 NDM1, DELTA-36NY CONSTRUCT, TWO CD-BOUND REMARK 900 RELATED ID: 4GYQ RELATED DB: PDB REMARK 900 NDM1, DELTA-30 CONSTRUCT, D223A MUTANT REMARK 900 RELATED ID: MCSG-APC105101 RELATED DB: TARGETTRACK DBREF 4GYU A 31 270 UNP C7C422 BLAN1_KLEPN 31 270 SEQADV 4GYU SER A 28 UNP C7C422 EXPRESSION TAG SEQADV 4GYU ASN A 29 UNP C7C422 EXPRESSION TAG SEQADV 4GYU ALA A 30 UNP C7C422 EXPRESSION TAG SEQADV 4GYU PHE A 121 UNP C7C422 ALA 121 ENGINEERED MUTATION SEQRES 1 A 243 SER ASN ALA ILE ARG PRO THR ILE GLY GLN GLN MET GLU SEQRES 2 A 243 THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN SEQRES 3 A 243 LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP SEQRES 4 A 243 MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE SEQRES 5 A 243 VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA SEQRES 6 A 243 TRP THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP ILE SEQRES 7 A 243 LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL SEQRES 8 A 243 THR HIS PHE HIS GLN ASP LYS MET GLY GLY MET ASP ALA SEQRES 9 A 243 LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SEQRES 10 A 243 SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA SEQRES 11 A 243 GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU SEQRES 12 A 243 PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE SEQRES 13 A 243 TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL SEQRES 14 A 243 GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU SEQRES 15 A 243 ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY SEQRES 16 A 243 ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA SEQRES 17 A 243 PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SEQRES 18 A 243 SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS SEQRES 19 A 243 THR ALA ARG MET ALA ASP LYS LEU ARG HET IMD A 301 5 HET IMD A 302 5 HET P6G A 303 19 HET PEG A 304 7 HET GOL A 305 6 HET GOL A 306 6 HETNAM IMD IMIDAZOLE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 IMD 2(C3 H5 N2 1+) FORMUL 4 P6G C12 H26 O7 FORMUL 5 PEG C4 H10 O3 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *130(H2 O) HELIX 1 1 THR A 94 ILE A 109 1 16 HELIX 2 2 LYS A 125 ALA A 135 1 11 HELIX 3 3 LEU A 144 GLU A 152 1 9 HELIX 4 4 GLU A 170 ALA A 174 5 5 HELIX 5 5 HIS A 228 PHE A 240 1 13 HELIX 6 6 ARG A 256 LYS A 268 1 13 SHEET 1 A 8 GLN A 44 PHE A 46 0 SHEET 2 A 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 A 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 A 8 GLY A 71 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 A 8 ARG A 85 VAL A 89 -1 O LEU A 87 N VAL A 80 SHEET 6 A 8 VAL A 113 VAL A 118 1 O VAL A 117 N VAL A 88 SHEET 7 A 8 ALA A 138 ASN A 142 1 O TYR A 140 N VAL A 118 SHEET 8 A 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 B 4 LEU A 180 PHE A 183 0 SHEET 2 B 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 B 4 ILE A 203 PHE A 205 -1 O PHE A 205 N VAL A 196 SHEET 4 B 4 MET A 245 VAL A 247 1 O VAL A 247 N ALA A 204 SITE 1 AC1 7 PHE A 121 ASN A 146 ALA A 149 VAL A 155 SITE 2 AC1 7 ALA A 156 ALA A 157 HOH A 517 SITE 1 AC2 6 ASP A 90 THR A 91 VAL A 118 HIS A 120 SITE 2 AC2 6 LYS A 125 HOH A 517 SITE 1 AC3 10 GLN A 38 GLU A 40 GLY A 42 PHE A 51 SITE 2 AC3 10 GLN A 53 TRP A 59 ARG A 81 GLU A 108 SITE 3 AC3 10 HOH A 429 HOH A 525 SITE 1 AC4 7 HIS A 133 ALA A 156 ALA A 157 HOH A 443 SITE 2 AC4 7 HOH A 470 HOH A 480 HOH A 523 SITE 1 AC5 6 ILE A 198 THR A 201 ILE A 203 LYS A 242 SITE 2 AC5 6 ALA A 243 HOH A 417 SITE 1 AC6 7 GLN A 107 GLU A 108 HOH A 428 HOH A 443 SITE 2 AC6 7 HOH A 470 HOH A 480 HOH A 530 CRYST1 101.473 101.473 42.679 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009855 0.005690 0.000000 0.00000 SCALE2 0.000000 0.011379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023431 0.00000