HEADER SIGNALING PROTEIN 06-SEP-12 4GZ8 TITLE MOUSE SEMAPHORIN 3A, DOMAINS SEMA-PSI-IG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMAPHORIN-3A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-675; COMPND 5 SYNONYM: SEMAPHORIN III, SEMA III, SEMAPHORIN-D, SEMA D; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SEMA3A, SEMAD, SEMD; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SEMA, MULTI-DOMAIN, CELL-CELL SIGNALING, PLEXIN, GLYCOSILATED, KEYWDS 2 EXTRACELLULAR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.J.C.JANSSEN,T.MALINAUSKAS,C.SIEBOLD,E.Y.JONES REVDAT 5 08-NOV-23 4GZ8 1 HETSYN REVDAT 4 29-JUL-20 4GZ8 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 26-DEC-12 4GZ8 1 JRNL REVDAT 2 07-NOV-12 4GZ8 1 JRNL REVDAT 1 17-OCT-12 4GZ8 0 JRNL AUTH B.J.C.JANSSEN,T.MALINAUSKAS,G.A.WEIR,M.Z.CADER,C.SIEBOLD, JRNL AUTH 2 E.Y.JONES JRNL TITL NEUROPILINS LOCK SECRETED SEMAPHORINS ONTO PLEXINS IN A JRNL TITL 2 TERNARY SIGNALING COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1293 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23104057 JRNL DOI 10.1038/NSMB.2416 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 28371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1930 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : 2.49000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.503 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.375 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9152 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 8533 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12441 ; 1.556 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19340 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1098 ; 8.747 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 431 ;34.669 ;23.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1406 ;17.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;18.454 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1370 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10284 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2127 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 27 664 B 27 665 33450 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29876 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 0.1M CALCIUM REMARK 280 ACETATE, 12% W/V PEG 8000, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.74000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.74000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 TYR A 22 REMARK 465 ALA A 23 REMARK 465 ASN A 24 REMARK 465 GLY A 25 REMARK 465 LYS A 26 REMARK 465 GLU A 255 REMARK 465 LYS A 466 REMARK 465 GLU A 467 REMARK 465 THR A 468 REMARK 465 TRP A 469 REMARK 465 HIS A 470 REMARK 465 ASP A 471 REMARK 465 THR A 548 REMARK 465 ALA A 549 REMARK 465 LYS A 550 REMARK 465 ALA A 551 REMARK 465 ARG A 552 REMARK 465 UNK A 570 REMARK 465 UNK A 571 REMARK 465 UNK A 572 REMARK 465 UNK A 573 REMARK 465 UNK A 574 REMARK 465 UNK A 575 REMARK 465 UNK A 576 REMARK 465 UNK A 577 REMARK 465 UNK A 578 REMARK 465 UNK A 579 REMARK 465 UNK A 580 REMARK 465 UNK A 581 REMARK 465 UNK A 582 REMARK 465 UNK A 583 REMARK 465 UNK A 584 REMARK 465 UNK A 585 REMARK 465 UNK A 586 REMARK 465 UNK A 587 REMARK 465 UNK A 588 REMARK 465 UNK A 589 REMARK 465 UNK A 590 REMARK 465 UNK A 591 REMARK 465 UNK A 592 REMARK 465 UNK A 593 REMARK 465 UNK A 594 REMARK 465 UNK A 595 REMARK 465 UNK A 596 REMARK 465 UNK A 597 REMARK 465 UNK A 610 REMARK 465 UNK A 611 REMARK 465 UNK A 612 REMARK 465 UNK A 613 REMARK 465 UNK A 614 REMARK 465 UNK A 615 REMARK 465 UNK A 616 REMARK 465 UNK A 617 REMARK 465 UNK A 618 REMARK 465 UNK A 619 REMARK 465 UNK A 620 REMARK 465 UNK A 621 REMARK 465 UNK A 622 REMARK 465 UNK A 623 REMARK 465 UNK A 624 REMARK 465 UNK A 625 REMARK 465 UNK A 626 REMARK 465 UNK A 627 REMARK 465 UNK A 628 REMARK 465 UNK A 629 REMARK 465 UNK A 630 REMARK 465 UNK A 631 REMARK 465 UNK A 632 REMARK 465 UNK A 633 REMARK 465 UNK A 634 REMARK 465 UNK A 635 REMARK 465 UNK A 636 REMARK 465 UNK A 637 REMARK 465 UNK A 638 REMARK 465 UNK A 639 REMARK 465 UNK A 640 REMARK 465 UNK A 641 REMARK 465 UNK A 642 REMARK 465 UNK A 643 REMARK 465 UNK A 644 REMARK 465 UNK A 645 REMARK 465 UNK A 646 REMARK 465 UNK A 647 REMARK 465 UNK A 648 REMARK 465 UNK A 649 REMARK 465 UNK A 657 REMARK 465 UNK A 658 REMARK 465 UNK A 659 REMARK 465 UNK A 667 REMARK 465 UNK A 668 REMARK 465 UNK A 669 REMARK 465 UNK A 670 REMARK 465 UNK A 671 REMARK 465 UNK A 672 REMARK 465 UNK A 673 REMARK 465 UNK A 674 REMARK 465 UNK A 675 REMARK 465 UNK A 676 REMARK 465 UNK A 677 REMARK 465 UNK A 678 REMARK 465 UNK A 679 REMARK 465 UNK A 680 REMARK 465 UNK A 681 REMARK 465 UNK A 682 REMARK 465 UNK A 683 REMARK 465 UNK A 684 REMARK 465 GLU B 18 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 ASN B 21 REMARK 465 TYR B 22 REMARK 465 ALA B 23 REMARK 465 ASN B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 254 REMARK 465 GLU B 255 REMARK 465 HIS B 256 REMARK 465 GLU B 467 REMARK 465 THR B 468 REMARK 465 TRP B 469 REMARK 465 HIS B 470 REMARK 465 ASP B 471 REMARK 465 ALA B 549 REMARK 465 LYS B 550 REMARK 465 ALA B 551 REMARK 465 ARG B 552 REMARK 465 UNK B 570 REMARK 465 UNK B 571 REMARK 465 UNK B 572 REMARK 465 UNK B 573 REMARK 465 UNK B 574 REMARK 465 UNK B 575 REMARK 465 UNK B 576 REMARK 465 UNK B 577 REMARK 465 UNK B 578 REMARK 465 UNK B 579 REMARK 465 UNK B 580 REMARK 465 UNK B 581 REMARK 465 UNK B 582 REMARK 465 UNK B 583 REMARK 465 UNK B 584 REMARK 465 UNK B 585 REMARK 465 UNK B 586 REMARK 465 UNK B 587 REMARK 465 UNK B 588 REMARK 465 UNK B 589 REMARK 465 UNK B 590 REMARK 465 UNK B 591 REMARK 465 UNK B 592 REMARK 465 UNK B 593 REMARK 465 UNK B 594 REMARK 465 UNK B 595 REMARK 465 UNK B 596 REMARK 465 UNK B 597 REMARK 465 UNK B 598 REMARK 465 UNK B 611 REMARK 465 UNK B 612 REMARK 465 UNK B 613 REMARK 465 UNK B 614 REMARK 465 UNK B 615 REMARK 465 UNK B 616 REMARK 465 UNK B 617 REMARK 465 UNK B 618 REMARK 465 UNK B 619 REMARK 465 UNK B 620 REMARK 465 UNK B 621 REMARK 465 UNK B 622 REMARK 465 UNK B 623 REMARK 465 UNK B 624 REMARK 465 UNK B 625 REMARK 465 UNK B 626 REMARK 465 UNK B 627 REMARK 465 UNK B 628 REMARK 465 UNK B 629 REMARK 465 UNK B 630 REMARK 465 UNK B 631 REMARK 465 UNK B 632 REMARK 465 UNK B 633 REMARK 465 UNK B 634 REMARK 465 UNK B 635 REMARK 465 UNK B 636 REMARK 465 UNK B 637 REMARK 465 UNK B 638 REMARK 465 UNK B 639 REMARK 465 UNK B 640 REMARK 465 UNK B 641 REMARK 465 UNK B 642 REMARK 465 UNK B 643 REMARK 465 UNK B 644 REMARK 465 UNK B 645 REMARK 465 UNK B 646 REMARK 465 UNK B 647 REMARK 465 UNK B 648 REMARK 465 UNK B 655 REMARK 465 UNK B 656 REMARK 465 UNK B 657 REMARK 465 UNK B 658 REMARK 465 UNK B 659 REMARK 465 UNK B 660 REMARK 465 UNK B 666 REMARK 465 UNK B 667 REMARK 465 UNK B 668 REMARK 465 UNK B 669 REMARK 465 UNK B 670 REMARK 465 UNK B 671 REMARK 465 UNK B 672 REMARK 465 UNK B 673 REMARK 465 UNK B 674 REMARK 465 UNK B 675 REMARK 465 UNK B 676 REMARK 465 UNK B 677 REMARK 465 UNK B 678 REMARK 465 UNK B 679 REMARK 465 UNK B 680 REMARK 465 UNK B 681 REMARK 465 UNK B 682 REMARK 465 UNK B 683 REMARK 465 UNK B 684 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 63 O ARG B 66 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 36.43 -98.93 REMARK 500 SER A 55 -162.03 -176.22 REMARK 500 SER A 67 82.75 -60.64 REMARK 500 ASN A 84 106.86 -170.95 REMARK 500 LEU A 121 92.78 -165.47 REMARK 500 TYR A 124 -75.18 -114.76 REMARK 500 ASN A 125 -169.20 -117.03 REMARK 500 THR A 134 122.33 -38.44 REMARK 500 HIS A 138 79.37 -158.91 REMARK 500 HIS A 149 -10.32 -147.54 REMARK 500 ASN A 153 68.79 30.30 REMARK 500 PHE A 162 117.46 -26.97 REMARK 500 LYS A 168 -58.49 -125.32 REMARK 500 THR A 190 -175.45 -175.03 REMARK 500 GLU A 214 172.30 -58.20 REMARK 500 HIS A 216 65.10 39.16 REMARK 500 ASP A 253 -61.53 -96.42 REMARK 500 ASN A 271 33.66 -90.27 REMARK 500 HIS A 276 -71.31 -79.07 REMARK 500 GLN A 309 -63.76 -128.72 REMARK 500 THR A 385 -85.72 -58.19 REMARK 500 PHE A 389 109.54 -42.38 REMARK 500 ALA A 403 -32.29 75.29 REMARK 500 ASN A 418 27.84 44.07 REMARK 500 ASP A 454 9.28 -69.83 REMARK 500 TYR A 520 -158.60 -74.61 REMARK 500 CYS A 542 115.81 -23.33 REMARK 500 ALA A 555 45.94 -148.54 REMARK 500 ASN A 560 -63.26 56.31 REMARK 500 HIS A 566 -43.69 -133.47 REMARK 500 UNK A 599 91.78 -167.59 REMARK 500 UNK A 600 157.40 -39.13 REMARK 500 UNK A 603 -14.07 -141.16 REMARK 500 UNK A 655 -88.18 -94.72 REMARK 500 ASN B 53 35.79 -98.50 REMARK 500 SER B 55 -160.42 -176.01 REMARK 500 ASN B 84 107.70 -169.93 REMARK 500 LEU B 121 93.85 -165.71 REMARK 500 TYR B 124 -74.35 -114.94 REMARK 500 ASN B 125 -168.44 -114.52 REMARK 500 THR B 134 122.20 -38.41 REMARK 500 HIS B 138 77.94 -159.53 REMARK 500 ASP B 152 48.48 -98.65 REMARK 500 PHE B 162 115.62 -20.84 REMARK 500 LYS B 168 -57.78 -125.97 REMARK 500 THR B 190 -175.86 -174.36 REMARK 500 LEU B 205 -179.37 75.06 REMARK 500 HIS B 207 -5.55 84.49 REMARK 500 GLU B 214 171.78 -57.35 REMARK 500 HIS B 216 66.90 37.52 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 66 SER A 67 -149.40 REMARK 500 HIS A 149 PRO A 150 -115.79 REMARK 500 GLY A 206 HIS A 207 138.75 REMARK 500 SER A 257 GLY A 258 133.94 REMARK 500 HIS B 148 HIS B 149 -145.43 REMARK 500 HIS B 161 PHE B 162 -137.96 REMARK 500 LEU B 205 GLY B 206 -140.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 808 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 122 OE2 REMARK 620 2 GLU A 122 OE1 52.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 807 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 310 OD1 REMARK 620 2 ASP A 310 OD2 52.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 122 OE1 REMARK 620 2 GLU B 122 OE2 49.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 310 OD2 REMARK 620 2 ASP B 310 OD1 51.7 REMARK 620 3 GLN B 433 OE1 80.3 90.1 REMARK 620 N 1 2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 (1) THE SEQUENCE IS BASED ON NCBI REFERENCE SEQUENCE: NP_033178.2. REMARK 999 RESIDUE 475 IS A VAL IN THIS DATABASE SEQUENCE. (2) RESIDUES 551 REMARK 999 AND 555 WERE BOTH MUTATED FROM ARG TO ALA TO PREVENT PROTEOLYTIC REMARK 999 CLEAVAGE IN THE FURIN SITE AT RESIDUES 551-555. (3) THE AUTHORS REMARK 999 KNOW THE SEQUENCE BUT ARE UNSURE OF THE ASSIGNMENT OF RESIDUES IN REMARK 999 THE SEGMENT 598 TO 666. THE ONE LETTER CODE SEQUENCE IS REMARK 999 LQHHDNHHGPSLEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEDRKEEIRMGDHIIRTEQGLLL DBREF 4GZ8 A 21 569 UNP O08665 SEM3A_MOUSE 21 569 DBREF 4GZ8 B 21 569 UNP O08665 SEM3A_MOUSE 21 569 DBREF 4GZ8 A 570 684 PDB 4GZ8 4GZ8 570 684 DBREF 4GZ8 B 570 684 PDB 4GZ8 4GZ8 570 684 SEQADV 4GZ8 GLU A 18 UNP O08665 EXPRESSION TAG SEQADV 4GZ8 THR A 19 UNP O08665 EXPRESSION TAG SEQADV 4GZ8 GLY A 20 UNP O08665 EXPRESSION TAG SEQADV 4GZ8 VAL A 475 UNP O08665 ILE 475 SEE REMARK 999 SEQADV 4GZ8 ALA A 551 UNP O08665 ARG 551 ENGINEERED MUTATION SEQADV 4GZ8 ALA A 555 UNP O08665 ARG 555 ENGINEERED MUTATION SEQADV 4GZ8 GLU B 18 UNP O08665 EXPRESSION TAG SEQADV 4GZ8 THR B 19 UNP O08665 EXPRESSION TAG SEQADV 4GZ8 GLY B 20 UNP O08665 EXPRESSION TAG SEQADV 4GZ8 VAL B 475 UNP O08665 ILE 475 SEE REMARK 999 SEQADV 4GZ8 ALA B 551 UNP O08665 ARG 551 ENGINEERED MUTATION SEQADV 4GZ8 ALA B 555 UNP O08665 ARG 555 ENGINEERED MUTATION SEQRES 1 A 667 GLU THR GLY ASN TYR ALA ASN GLY LYS ASN ASN VAL PRO SEQRES 2 A 667 ARG LEU LYS LEU SER TYR LYS GLU MET LEU GLU SER ASN SEQRES 3 A 667 ASN VAL ILE THR PHE ASN GLY LEU ALA ASN SER SER SER SEQRES 4 A 667 TYR HIS THR PHE LEU LEU ASP GLU GLU ARG SER ARG LEU SEQRES 5 A 667 TYR VAL GLY ALA LYS ASP HIS ILE PHE SER PHE ASN LEU SEQRES 6 A 667 VAL ASN ILE LYS ASP PHE GLN LYS ILE VAL TRP PRO VAL SEQRES 7 A 667 SER TYR THR ARG ARG ASP GLU CYS LYS TRP ALA GLY LYS SEQRES 8 A 667 ASP ILE LEU LYS GLU CYS ALA ASN PHE ILE LYS VAL LEU SEQRES 9 A 667 GLU ALA TYR ASN GLN THR HIS LEU TYR ALA CYS GLY THR SEQRES 10 A 667 GLY ALA PHE HIS PRO ILE CYS THR TYR ILE GLU VAL GLY SEQRES 11 A 667 HIS HIS PRO GLU ASP ASN ILE PHE LYS LEU GLN ASP SER SEQRES 12 A 667 HIS PHE GLU ASN GLY ARG GLY LYS SER PRO TYR ASP PRO SEQRES 13 A 667 LYS LEU LEU THR ALA SER LEU LEU ILE ASP GLY GLU LEU SEQRES 14 A 667 TYR SER GLY THR ALA ALA ASP PHE MET GLY ARG ASP PHE SEQRES 15 A 667 ALA ILE PHE ARG THR LEU GLY HIS HIS HIS PRO ILE ARG SEQRES 16 A 667 THR GLU GLN HIS ASP SER ARG TRP LEU ASN ASP PRO ARG SEQRES 17 A 667 PHE ILE SER ALA HIS LEU ILE PRO GLU SER ASP ASN PRO SEQRES 18 A 667 GLU ASP ASP LYS VAL TYR PHE PHE PHE ARG GLU ASN ALA SEQRES 19 A 667 ILE ASP GLY GLU HIS SER GLY LYS ALA THR HIS ALA ARG SEQRES 20 A 667 ILE GLY GLN ILE CYS LYS ASN ASP PHE GLY GLY HIS ARG SEQRES 21 A 667 SER LEU VAL ASN LYS TRP THR THR PHE LEU LYS ALA ARG SEQRES 22 A 667 LEU ILE CYS SER VAL PRO GLY PRO ASN GLY ILE ASP THR SEQRES 23 A 667 HIS PHE ASP GLU LEU GLN ASP VAL PHE LEU MET ASN SER SEQRES 24 A 667 LYS ASP PRO LYS ASN PRO ILE VAL TYR GLY VAL PHE THR SEQRES 25 A 667 THR SER SER ASN ILE PHE LYS GLY SER ALA VAL CYS MET SEQRES 26 A 667 TYR SER MET SER ASP VAL ARG ARG VAL PHE LEU GLY PRO SEQRES 27 A 667 TYR ALA HIS ARG ASP GLY PRO ASN TYR GLN TRP VAL PRO SEQRES 28 A 667 TYR GLN GLY ARG VAL PRO TYR PRO ARG PRO GLY THR CYS SEQRES 29 A 667 PRO SER LYS THR PHE GLY GLY PHE ASP SER THR LYS ASP SEQRES 30 A 667 LEU PRO ASP ASP VAL ILE THR PHE ALA ARG SER HIS PRO SEQRES 31 A 667 ALA MET TYR ASN PRO VAL PHE PRO ILE ASN ASN ARG PRO SEQRES 32 A 667 ILE MET ILE LYS THR ASP VAL ASN TYR GLN PHE THR GLN SEQRES 33 A 667 ILE VAL VAL ASP ARG VAL ASP ALA GLU ASP GLY GLN TYR SEQRES 34 A 667 ASP VAL MET PHE ILE GLY THR ASP VAL GLY THR VAL LEU SEQRES 35 A 667 LYS VAL VAL SER VAL PRO LYS GLU THR TRP HIS ASP LEU SEQRES 36 A 667 GLU GLU VAL LEU LEU GLU GLU MET THR VAL PHE ARG GLU SEQRES 37 A 667 PRO THR THR ILE SER ALA MET GLU LEU SER THR LYS GLN SEQRES 38 A 667 GLN GLN LEU TYR ILE GLY SER THR ALA GLY VAL ALA GLN SEQRES 39 A 667 LEU PRO LEU HIS ARG CYS ASP ILE TYR GLY LYS ALA CYS SEQRES 40 A 667 ALA GLU CYS CYS LEU ALA ARG ASP PRO TYR CYS ALA TRP SEQRES 41 A 667 ASP GLY SER SER CYS SER ARG TYR PHE PRO THR ALA LYS SEQRES 42 A 667 ALA ARG THR ARG ALA GLN ASP ILE ARG ASN GLY ASP PRO SEQRES 43 A 667 LEU THR HIS CYS SER ASP UNK UNK UNK UNK UNK UNK UNK SEQRES 44 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 45 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 46 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 47 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 48 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 49 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 50 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 51 A 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 52 A 667 UNK UNK UNK UNK SEQRES 1 B 667 GLU THR GLY ASN TYR ALA ASN GLY LYS ASN ASN VAL PRO SEQRES 2 B 667 ARG LEU LYS LEU SER TYR LYS GLU MET LEU GLU SER ASN SEQRES 3 B 667 ASN VAL ILE THR PHE ASN GLY LEU ALA ASN SER SER SER SEQRES 4 B 667 TYR HIS THR PHE LEU LEU ASP GLU GLU ARG SER ARG LEU SEQRES 5 B 667 TYR VAL GLY ALA LYS ASP HIS ILE PHE SER PHE ASN LEU SEQRES 6 B 667 VAL ASN ILE LYS ASP PHE GLN LYS ILE VAL TRP PRO VAL SEQRES 7 B 667 SER TYR THR ARG ARG ASP GLU CYS LYS TRP ALA GLY LYS SEQRES 8 B 667 ASP ILE LEU LYS GLU CYS ALA ASN PHE ILE LYS VAL LEU SEQRES 9 B 667 GLU ALA TYR ASN GLN THR HIS LEU TYR ALA CYS GLY THR SEQRES 10 B 667 GLY ALA PHE HIS PRO ILE CYS THR TYR ILE GLU VAL GLY SEQRES 11 B 667 HIS HIS PRO GLU ASP ASN ILE PHE LYS LEU GLN ASP SER SEQRES 12 B 667 HIS PHE GLU ASN GLY ARG GLY LYS SER PRO TYR ASP PRO SEQRES 13 B 667 LYS LEU LEU THR ALA SER LEU LEU ILE ASP GLY GLU LEU SEQRES 14 B 667 TYR SER GLY THR ALA ALA ASP PHE MET GLY ARG ASP PHE SEQRES 15 B 667 ALA ILE PHE ARG THR LEU GLY HIS HIS HIS PRO ILE ARG SEQRES 16 B 667 THR GLU GLN HIS ASP SER ARG TRP LEU ASN ASP PRO ARG SEQRES 17 B 667 PHE ILE SER ALA HIS LEU ILE PRO GLU SER ASP ASN PRO SEQRES 18 B 667 GLU ASP ASP LYS VAL TYR PHE PHE PHE ARG GLU ASN ALA SEQRES 19 B 667 ILE ASP GLY GLU HIS SER GLY LYS ALA THR HIS ALA ARG SEQRES 20 B 667 ILE GLY GLN ILE CYS LYS ASN ASP PHE GLY GLY HIS ARG SEQRES 21 B 667 SER LEU VAL ASN LYS TRP THR THR PHE LEU LYS ALA ARG SEQRES 22 B 667 LEU ILE CYS SER VAL PRO GLY PRO ASN GLY ILE ASP THR SEQRES 23 B 667 HIS PHE ASP GLU LEU GLN ASP VAL PHE LEU MET ASN SER SEQRES 24 B 667 LYS ASP PRO LYS ASN PRO ILE VAL TYR GLY VAL PHE THR SEQRES 25 B 667 THR SER SER ASN ILE PHE LYS GLY SER ALA VAL CYS MET SEQRES 26 B 667 TYR SER MET SER ASP VAL ARG ARG VAL PHE LEU GLY PRO SEQRES 27 B 667 TYR ALA HIS ARG ASP GLY PRO ASN TYR GLN TRP VAL PRO SEQRES 28 B 667 TYR GLN GLY ARG VAL PRO TYR PRO ARG PRO GLY THR CYS SEQRES 29 B 667 PRO SER LYS THR PHE GLY GLY PHE ASP SER THR LYS ASP SEQRES 30 B 667 LEU PRO ASP ASP VAL ILE THR PHE ALA ARG SER HIS PRO SEQRES 31 B 667 ALA MET TYR ASN PRO VAL PHE PRO ILE ASN ASN ARG PRO SEQRES 32 B 667 ILE MET ILE LYS THR ASP VAL ASN TYR GLN PHE THR GLN SEQRES 33 B 667 ILE VAL VAL ASP ARG VAL ASP ALA GLU ASP GLY GLN TYR SEQRES 34 B 667 ASP VAL MET PHE ILE GLY THR ASP VAL GLY THR VAL LEU SEQRES 35 B 667 LYS VAL VAL SER VAL PRO LYS GLU THR TRP HIS ASP LEU SEQRES 36 B 667 GLU GLU VAL LEU LEU GLU GLU MET THR VAL PHE ARG GLU SEQRES 37 B 667 PRO THR THR ILE SER ALA MET GLU LEU SER THR LYS GLN SEQRES 38 B 667 GLN GLN LEU TYR ILE GLY SER THR ALA GLY VAL ALA GLN SEQRES 39 B 667 LEU PRO LEU HIS ARG CYS ASP ILE TYR GLY LYS ALA CYS SEQRES 40 B 667 ALA GLU CYS CYS LEU ALA ARG ASP PRO TYR CYS ALA TRP SEQRES 41 B 667 ASP GLY SER SER CYS SER ARG TYR PHE PRO THR ALA LYS SEQRES 42 B 667 ALA ARG THR ARG ALA GLN ASP ILE ARG ASN GLY ASP PRO SEQRES 43 B 667 LEU THR HIS CYS SER ASP UNK UNK UNK UNK UNK UNK UNK SEQRES 44 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 45 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 46 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 47 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 48 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 49 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 50 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 51 B 667 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 52 B 667 UNK UNK UNK UNK MODRES 4GZ8 ASN A 53 ASN GLYCOSYLATION SITE MODRES 4GZ8 ASN B 53 ASN GLYCOSYLATION SITE MODRES 4GZ8 ASN A 125 ASN GLYCOSYLATION SITE MODRES 4GZ8 ASN B 125 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET CA A 807 1 HET CA A 808 1 HET CA A 809 1 HET ACT A 810 4 HET CA B 801 1 HET CA B 802 1 HET NAG B 807 14 HET ACT B 808 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 6 CA 5(CA 2+) FORMUL 9 ACT 2(C2 H3 O2 1-) HELIX 1 1 SER A 35 SER A 42 1 8 HELIX 2 2 SER A 96 ALA A 106 1 11 HELIX 3 3 MET A 345 GLY A 354 1 10 HELIX 4 4 PRO A 396 PHE A 402 1 7 HELIX 5 5 PRO A 415 ARG A 419 5 5 HELIX 6 6 ARG A 516 TYR A 520 5 5 HELIX 7 7 ALA A 523 ALA A 530 1 8 HELIX 8 8 SER B 35 SER B 42 1 8 HELIX 9 9 SER B 96 ALA B 106 1 11 HELIX 10 10 MET B 345 GLY B 354 1 10 HELIX 11 11 PRO B 396 PHE B 402 1 7 HELIX 12 12 PRO B 415 ARG B 419 5 5 HELIX 13 13 ARG B 516 TYR B 520 5 5 HELIX 14 14 ALA B 523 ALA B 530 1 8 SHEET 1 A 5 LEU A 32 LEU A 34 0 SHEET 2 A 5 GLU A 473 THR A 481 1 O THR A 481 N LEU A 34 SHEET 3 A 5 THR A 457 VAL A 464 -1 N VAL A 464 O GLU A 473 SHEET 4 A 5 GLN A 445 THR A 453 -1 N ILE A 451 O LEU A 459 SHEET 5 A 5 PHE A 431 ASP A 440 -1 N VAL A 435 O PHE A 450 SHEET 1 B 4 ILE A 46 PHE A 48 0 SHEET 2 B 4 VAL A 509 PRO A 513 -1 O VAL A 509 N PHE A 48 SHEET 3 B 4 GLN A 500 GLY A 504 -1 N LEU A 501 O LEU A 512 SHEET 4 B 4 ALA A 491 SER A 495 -1 N GLU A 493 O TYR A 502 SHEET 1 C 4 THR A 59 ASP A 63 0 SHEET 2 C 4 ARG A 68 GLY A 72 -1 O GLY A 72 N THR A 59 SHEET 3 C 4 HIS A 76 ASN A 81 -1 O PHE A 80 N LEU A 69 SHEET 4 C 4 PHE A 88 VAL A 92 -1 O ILE A 91 N ILE A 77 SHEET 1 D 4 ILE A 118 ASN A 125 0 SHEET 2 D 4 HIS A 128 GLY A 133 -1 O HIS A 128 N TYR A 124 SHEET 3 D 4 ILE A 140 GLU A 145 -1 O THR A 142 N ALA A 131 SHEET 4 D 4 LYS A 156 LEU A 157 -1 O LYS A 156 N GLU A 145 SHEET 1 E 4 ILE A 118 ASN A 125 0 SHEET 2 E 4 HIS A 128 GLY A 133 -1 O HIS A 128 N TYR A 124 SHEET 3 E 4 ILE A 140 GLU A 145 -1 O THR A 142 N ALA A 131 SHEET 4 E 4 GLU A 163 ASN A 164 -1 O GLU A 163 N CYS A 141 SHEET 1 F 4 ALA A 178 ILE A 182 0 SHEET 2 F 4 GLU A 185 ALA A 191 -1 O TYR A 187 N LEU A 180 SHEET 3 F 4 PHE A 199 THR A 204 -1 O PHE A 202 N SER A 188 SHEET 4 F 4 ILE A 211 ARG A 212 -1 O ILE A 211 N ARG A 203 SHEET 1 G 4 ARG A 225 ILE A 232 0 SHEET 2 G 4 LYS A 242 ASN A 250 -1 O TYR A 244 N HIS A 230 SHEET 3 G 4 THR A 261 CYS A 269 -1 O ARG A 264 N PHE A 247 SHEET 4 G 4 LEU A 287 LEU A 291 -1 O LEU A 291 N ALA A 263 SHEET 1 H 2 SER A 294 VAL A 295 0 SHEET 2 H 2 THR A 303 HIS A 304 -1 O THR A 303 N VAL A 295 SHEET 1 I 4 GLU A 307 MET A 314 0 SHEET 2 I 4 ILE A 323 THR A 329 -1 O TYR A 325 N PHE A 312 SHEET 3 I 4 SER A 338 SER A 344 -1 O ALA A 339 N PHE A 328 SHEET 4 I 4 MET A 422 LYS A 424 -1 O LYS A 424 N SER A 338 SHEET 1 J 2 ALA A 357 HIS A 358 0 SHEET 2 J 2 VAL A 367 PRO A 368 -1 O VAL A 367 N HIS A 358 SHEET 1 K 2 CYS A 535 ALA A 536 0 SHEET 2 K 2 SER A 543 ARG A 544 -1 O SER A 543 N ALA A 536 SHEET 1 L 3 UNK A 606 UNK A 608 0 SHEET 2 L 3 UNK A 651 UNK A 654 -1 O UNK A 653 N UNK A 606 SHEET 3 L 3 UNK A 661 UNK A 663 -1 O UNK A 663 N UNK A 652 SHEET 1 M 5 LEU B 32 LEU B 34 0 SHEET 2 M 5 GLU B 473 THR B 481 1 O THR B 481 N LEU B 34 SHEET 3 M 5 THR B 457 VAL B 464 -1 N VAL B 458 O MET B 480 SHEET 4 M 5 GLN B 445 THR B 453 -1 N ILE B 451 O LEU B 459 SHEET 5 M 5 PHE B 431 ASP B 440 -1 N VAL B 435 O PHE B 450 SHEET 1 N 4 ILE B 46 PHE B 48 0 SHEET 2 N 4 VAL B 509 PRO B 513 -1 O VAL B 509 N PHE B 48 SHEET 3 N 4 GLN B 500 GLY B 504 -1 N LEU B 501 O LEU B 512 SHEET 4 N 4 ALA B 491 SER B 495 -1 N GLU B 493 O TYR B 502 SHEET 1 O 4 THR B 59 ASP B 63 0 SHEET 2 O 4 ARG B 68 GLY B 72 -1 O GLY B 72 N THR B 59 SHEET 3 O 4 HIS B 76 ASN B 81 -1 O PHE B 80 N LEU B 69 SHEET 4 O 4 PHE B 88 VAL B 92 -1 O ILE B 91 N ILE B 77 SHEET 1 P 4 ILE B 118 ASN B 125 0 SHEET 2 P 4 HIS B 128 GLY B 133 -1 O HIS B 128 N TYR B 124 SHEET 3 P 4 ILE B 140 GLU B 145 -1 O THR B 142 N ALA B 131 SHEET 4 P 4 LYS B 156 LEU B 157 -1 O LYS B 156 N GLU B 145 SHEET 1 Q 4 ILE B 118 ASN B 125 0 SHEET 2 Q 4 HIS B 128 GLY B 133 -1 O HIS B 128 N TYR B 124 SHEET 3 Q 4 ILE B 140 GLU B 145 -1 O THR B 142 N ALA B 131 SHEET 4 Q 4 GLU B 163 ASN B 164 -1 O GLU B 163 N CYS B 141 SHEET 1 R 4 ALA B 178 ILE B 182 0 SHEET 2 R 4 GLU B 185 ALA B 191 -1 O TYR B 187 N LEU B 180 SHEET 3 R 4 PHE B 199 THR B 204 -1 O PHE B 202 N SER B 188 SHEET 4 R 4 ILE B 211 ARG B 212 -1 O ILE B 211 N ARG B 203 SHEET 1 S 4 ARG B 225 ILE B 232 0 SHEET 2 S 4 LYS B 242 ASN B 250 -1 O TYR B 244 N HIS B 230 SHEET 3 S 4 THR B 261 CYS B 269 -1 O ARG B 264 N PHE B 247 SHEET 4 S 4 LEU B 287 LEU B 291 -1 O LEU B 291 N ALA B 263 SHEET 1 T 2 SER B 294 VAL B 295 0 SHEET 2 T 2 THR B 303 HIS B 304 -1 O THR B 303 N VAL B 295 SHEET 1 U 4 GLU B 307 MET B 314 0 SHEET 2 U 4 ILE B 323 THR B 329 -1 O TYR B 325 N PHE B 312 SHEET 3 U 4 SER B 338 SER B 344 -1 O ALA B 339 N PHE B 328 SHEET 4 U 4 MET B 422 LYS B 424 -1 O LYS B 424 N SER B 338 SHEET 1 V 2 ALA B 357 HIS B 358 0 SHEET 2 V 2 VAL B 367 PRO B 368 -1 O VAL B 367 N HIS B 358 SHEET 1 W 2 CYS B 535 ALA B 536 0 SHEET 2 W 2 SER B 543 ARG B 544 -1 O SER B 543 N ALA B 536 SHEET 1 X 2 UNK B 651 UNK B 652 0 SHEET 2 X 2 UNK B 663 UNK B 664 -1 O UNK B 663 N UNK B 652 SSBOND 1 CYS A 103 CYS A 114 1555 1555 2.11 SSBOND 2 CYS A 132 CYS A 141 1555 1555 2.09 SSBOND 3 CYS A 269 CYS A 381 1555 1555 2.06 SSBOND 4 CYS A 293 CYS A 341 1555 1555 2.04 SSBOND 5 CYS A 517 CYS A 535 1555 1555 2.05 SSBOND 6 CYS A 524 CYS A 567 1555 1555 2.04 SSBOND 7 CYS A 527 CYS A 542 1555 1555 2.06 SSBOND 8 CYS B 103 CYS B 114 1555 1555 2.11 SSBOND 9 CYS B 132 CYS B 141 1555 1555 2.10 SSBOND 10 CYS B 269 CYS B 381 1555 1555 2.05 SSBOND 11 CYS B 293 CYS B 341 1555 1555 2.05 SSBOND 12 CYS B 517 CYS B 535 1555 1555 2.07 SSBOND 13 CYS B 524 CYS B 567 1555 1555 2.05 SSBOND 14 CYS B 527 CYS B 542 1555 1555 2.04 LINK ND2 ASN A 53 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 125 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 53 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN B 125 C1 NAG B 807 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.47 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.46 LINK O SER A 54 CA CA A 809 1555 1555 2.94 LINK OE2 GLU A 122 CA CA A 808 1555 1555 2.38 LINK OE1 GLU A 122 CA CA A 808 1555 1555 2.53 LINK OD1 ASP A 310 CA CA A 807 1555 1555 2.42 LINK OD2 ASP A 310 CA CA A 807 1555 1555 2.48 LINK OE1 GLU B 122 CA CA B 802 1555 1555 2.58 LINK OE2 GLU B 122 CA CA B 802 1555 1555 2.59 LINK OD2 ASP B 310 CA CA B 801 1555 1555 2.46 LINK OD1 ASP B 310 CA CA B 801 1555 1555 2.50 LINK OE1 GLN B 433 CA CA B 801 1555 1555 2.26 CISPEP 1 PRO A 150 GLU A 151 0 13.14 CISPEP 2 TYR A 375 PRO A 376 0 -1.03 CISPEP 3 TYR B 375 PRO B 376 0 -2.33 CISPEP 4 PRO B 547 THR B 548 0 16.72 CRYST1 97.630 126.170 161.480 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006193 0.00000