HEADER HYDROLASE 07-SEP-12 4H04 TITLE LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTO-N-BIOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GH20 DOMAIN, UNP RESIDUES 41-663; COMPND 5 EC: 3.2.1.140; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM BIFIDUM; SOURCE 3 ORGANISM_TAXID: 398514; SOURCE 4 STRAIN: JCM1254; SOURCE 5 GENE: LNBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TIM BARREL, HYDROLASE, EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR T.ITO,T.KATAYAMA,J.WADA,R.SUZUKI,H.ASHIDA,T.WAKAGI,K.YAMAMOTO, AUTHOR 2 S.FUSHINOBU REVDAT 4 09-OCT-24 4H04 1 HETSYN REVDAT 3 29-JUL-20 4H04 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 10-JUL-13 4H04 1 JRNL REVDAT 1 20-MAR-13 4H04 0 JRNL AUTH T.ITO,T.KATAYAMA,M.HATTIE,H.SAKURAMA,J.WADA,R.SUZUKI, JRNL AUTH 2 H.ASHIDA,T.WAKAGI,K.YAMAMOTO,K.A.STUBBS,S.FUSHINOBU JRNL TITL CRYSTAL STRUCTURES OF A GLYCOSIDE HYDROLASE FAMILY 20 JRNL TITL 2 LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM JRNL REF J.BIOL.CHEM. V. 288 11795 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23479733 JRNL DOI 10.1074/JBC.M112.420109 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.WADA,T.ANDO,M.KIYOHARA,H.ASHIDA,M.KITAOKA,M.YAMAGUCHI, REMARK 1 AUTH 2 H.KUMAGAI,T.KATAYAMA,K.YAMAMOTO REMARK 1 TITL BIFIDOBACTERIUM BIFIDUM LACTO-N-BIOSIDASE, A CRITICAL ENZYME REMARK 1 TITL 2 FOR THE DEGRADATION OF HUMAN MILK OLIGOSACCHARIDES WITH A REMARK 1 TITL 3 TYPE 1 STRUCTURE REMARK 1 REF APPL.ENVIRON.MICROBIOL. V. 74 3996 2008 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 18469123 REMARK 1 DOI 10.1128/AEM.00149-08 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 141195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9810 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 475 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 1327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10238 ; 0.028 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13904 ; 2.503 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1263 ; 7.127 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 472 ;33.916 ;24.873 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1719 ;13.790 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;19.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1523 ; 0.294 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7764 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 662 4 REMARK 3 1 B 1 B 661 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 4963 ; 0.370 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 4963 ; 2.070 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4H04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148717 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 27.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28100 REMARK 200 FOR SHELL : 4.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CITRATE, 2.0M AMMONIUM SULFATE, PH 5.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.40750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.51650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.40750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.51650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 801 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 ASP A 663 REMARK 465 MET B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 SER B 662 REMARK 465 ASP B 663 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 39 CG HIS A 39 CD2 0.064 REMARK 500 ARG A 52 CZ ARG A 52 NH1 0.090 REMARK 500 TRP A 62 CG TRP A 62 CD1 0.099 REMARK 500 TRP A 62 CE2 TRP A 62 CD2 0.108 REMARK 500 HIS A 316 CG HIS A 316 CD2 0.057 REMARK 500 TRP A 394 CE2 TRP A 394 CD2 0.091 REMARK 500 TYR A 409 CE1 TYR A 409 CZ 0.096 REMARK 500 TRP A 465 CE2 TRP A 465 CD2 0.079 REMARK 500 HIS A 573 CG HIS A 573 CD2 0.066 REMARK 500 ASP A 597 CB ASP A 597 CG 0.132 REMARK 500 TRP B 62 CE2 TRP B 62 CD2 0.104 REMARK 500 ARG B 162 CZ ARG B 162 NH1 0.084 REMARK 500 GLU B 269 CG GLU B 269 CD 0.097 REMARK 500 ASP B 307 CB ASP B 307 CG -0.138 REMARK 500 TRP B 315 CE2 TRP B 315 CD2 0.076 REMARK 500 HIS B 316 CG HIS B 316 CD2 0.063 REMARK 500 TRP B 420 CE2 TRP B 420 CD2 0.078 REMARK 500 TRP B 493 CE2 TRP B 493 CD2 0.081 REMARK 500 ARG B 497 CZ ARG B 497 NH2 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 40 CG - SD - CE ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 237 CG - CD - NE ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 239 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP A 239 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 LYS A 297 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 GLU A 305 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR A 322 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ILE A 377 CG1 - CB - CG2 ANGL. DEV. = -17.5 DEGREES REMARK 500 LEU A 404 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 433 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LYS A 479 CD - CE - NZ ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 486 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 551 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 599 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR B 152 CD1 - CE1 - CZ ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 200 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP B 239 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP B 239 CB - CG - OD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 VAL B 266 CG1 - CB - CG2 ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG B 497 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 LEU B 516 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG B 605 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 605 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 613 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU B 660 CB - CG - CD1 ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 188 56.59 -109.55 REMARK 500 GLN A 190 -65.37 74.48 REMARK 500 ALA A 230 47.13 -82.42 REMARK 500 ALA A 319 18.76 80.36 REMARK 500 THR A 326 -156.19 -163.18 REMARK 500 VAL A 378 -145.68 -139.08 REMARK 500 ALA A 397 84.87 -152.49 REMARK 500 ASP A 467 -143.57 49.77 REMARK 500 ALA B 188 54.46 -105.55 REMARK 500 GLN B 190 -63.51 81.66 REMARK 500 ALA B 319 15.66 86.45 REMARK 500 THR B 326 -147.12 -161.40 REMARK 500 ALA B 397 146.91 -176.69 REMARK 500 ASP B 467 -133.78 44.12 REMARK 500 ASP B 617 -32.76 126.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 468 SER B 469 -149.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 4H04 A 41 663 UNP B3TLD6 B3TLD6_BIFBI 41 663 DBREF 4H04 B 41 663 UNP B3TLD6 B3TLD6_BIFBI 41 663 SEQADV 4H04 MET A 20 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 GLY A 21 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER A 22 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER A 23 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 24 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 25 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 26 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 27 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 28 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 29 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER A 30 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER A 31 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 GLY A 32 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 LEU A 33 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 VAL A 34 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 PRO A 35 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 ARG A 36 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 GLY A 37 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER A 38 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS A 39 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 MET A 40 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 MET B 20 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 GLY B 21 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER B 22 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER B 23 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 24 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 25 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 26 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 27 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 28 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 29 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER B 30 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER B 31 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 GLY B 32 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 LEU B 33 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 VAL B 34 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 PRO B 35 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 ARG B 36 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 GLY B 37 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 SER B 38 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 HIS B 39 UNP B3TLD6 EXPRESSION TAG SEQADV 4H04 MET B 40 UNP B3TLD6 EXPRESSION TAG SEQRES 1 A 644 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 644 LEU VAL PRO ARG GLY SER HIS MET GLY TYR SER ALA THR SEQRES 3 A 644 ALA PRO VAL ASN LEU THR ARG PRO ALA THR VAL PRO SER SEQRES 4 A 644 MET ASP GLY TRP THR ASP GLY THR GLY ALA TRP THR LEU SEQRES 5 A 644 GLY GLU GLY THR ARG VAL VAL SER SER ASP ALA LEU ALA SEQRES 6 A 644 ALA ARG ALA GLN SER LEU ALA SER GLU LEU THR LYS PHE SEQRES 7 A 644 THR ASP VAL ASP ILE LYS ALA ALA THR GLY SER ALA THR SEQRES 8 A 644 GLY LYS ASP ILE SER LEU THR LEU ASP ALA SER LYS LYS SEQRES 9 A 644 ALA GLU LEU GLY ASP GLU GLY PHE LYS LEU ASN ILE GLY SEQRES 10 A 644 SER LYS GLY LEU GLU VAL ILE GLY ALA THR ASP ILE GLY SEQRES 11 A 644 VAL PHE TYR GLY THR ARG SER VAL SER GLN MET LEU ARG SEQRES 12 A 644 GLN GLY GLN LEU THR LEU PRO ALA GLY THR VAL ALA THR SEQRES 13 A 644 LYS PRO LYS TYR LYS GLU ARG GLY ALA THR LEU CYS ALA SEQRES 14 A 644 CYS GLN ILE ASN ILE SER THR ASP TRP ILE ASP ARG PHE SEQRES 15 A 644 LEU SER ASP MET ALA ASP LEU ARG LEU ASN TYR VAL LEU SEQRES 16 A 644 LEU GLU MET LYS LEU LYS PRO GLU GLU ASP ASN THR LYS SEQRES 17 A 644 LYS ALA ALA THR TRP SER TYR TYR THR ARG ASP ASP VAL SEQRES 18 A 644 LYS LYS PHE VAL LYS LYS ALA ASN ASN TYR GLY ILE ASP SEQRES 19 A 644 VAL ILE PRO GLU ILE ASN SER PRO GLY HIS MET ASN VAL SEQRES 20 A 644 TRP LEU GLU ASN TYR PRO GLU TYR GLN LEU ALA ASP ASN SEQRES 21 A 644 SER GLY ARG LYS ASP PRO ASN LYS LEU ASP ILE SER ASN SEQRES 22 A 644 PRO GLU ALA VAL LYS PHE TYR LYS THR LEU ILE ASP GLU SEQRES 23 A 644 TYR ASP GLY VAL PHE THR THR LYS TYR TRP HIS MET GLY SEQRES 24 A 644 ALA ASP GLU TYR MET ILE GLY THR SER PHE ASP ASN TYR SEQRES 25 A 644 SER LYS LEU LYS THR PHE ALA GLU LYS GLN TYR GLY ALA SEQRES 26 A 644 GLY ALA THR PRO ASN ASP ALA PHE THR GLY PHE ILE ASN SEQRES 27 A 644 ASP ILE ASP LYS TYR VAL LYS ALA LYS GLY LYS GLN LEU SEQRES 28 A 644 ARG ILE TRP ASN ASP GLY ILE VAL ASN THR LYS ASN VAL SEQRES 29 A 644 SER LEU ASN LYS ASP ILE VAL ILE GLU TYR TRP TYR GLY SEQRES 30 A 644 ALA GLY ARG LYS PRO GLN GLU LEU VAL GLN ASP GLY TYR SEQRES 31 A 644 THR LEU MET ASN ALA THR GLN ALA LEU TYR TRP SER ARG SEQRES 32 A 644 SER ALA GLN VAL TYR LYS VAL ASN ALA ALA ARG LEU TYR SEQRES 33 A 644 ASN ASN ASN TRP ASN VAL GLY THR PHE ASP GLY GLY ARG SEQRES 34 A 644 GLN ILE ASP LYS ASN TYR ASP LYS LEU THR GLY ALA LYS SEQRES 35 A 644 VAL SER ILE TRP PRO ASP SER SER TYR PHE GLN THR GLU SEQRES 36 A 644 ASN GLU VAL GLU LYS GLU ILE PHE ASP GLY MET ARG PHE SEQRES 37 A 644 ILE SER GLN MET THR TRP SER ASP SER ARG PRO TRP ALA SEQRES 38 A 644 THR TRP ASN ASP MET LYS ALA ASP ILE ASP LYS ILE GLY SEQRES 39 A 644 TYR PRO LEU ASP ILE ARG GLU TYR ASP TYR THR PRO VAL SEQRES 40 A 644 ASP ALA GLY ILE TYR ASP ILE PRO GLN LEU LYS SER ILE SEQRES 41 A 644 SER LYS GLY PRO TRP GLU LEU ILE THR THR PRO ASP GLY SEQRES 42 A 644 TYR TYR GLN MET LYS ASP THR VAL SER GLY LYS CYS LEU SEQRES 43 A 644 ALA LEU PHE THR GLY SER LYS HIS LEU ASP VAL VAL THR SEQRES 44 A 644 GLN VAL GLY ALA ARG PRO GLU LEU ARG ASN CYS ALA ASP SEQRES 45 A 644 VAL SER VAL GLY GLN ASP GLN ARG ASN THR ALA ASN GLU SEQRES 46 A 644 ARG ASN THR GLN LYS TRP GLN ILE ARG ALA ASP LYS ASP SEQRES 47 A 644 GLY LYS TYR THR ILE SER PRO ALA LEU THR GLN GLN ARG SEQRES 48 A 644 LEU ALA ILE ALA THR GLY ASN GLU GLN ASN ILE ASP LEU SEQRES 49 A 644 GLU THR HIS ARG PRO ALA ALA GLY THR VAL ALA GLN PHE SEQRES 50 A 644 PRO ALA ASP LEU VAL SER ASP SEQRES 1 B 644 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 644 LEU VAL PRO ARG GLY SER HIS MET GLY TYR SER ALA THR SEQRES 3 B 644 ALA PRO VAL ASN LEU THR ARG PRO ALA THR VAL PRO SER SEQRES 4 B 644 MET ASP GLY TRP THR ASP GLY THR GLY ALA TRP THR LEU SEQRES 5 B 644 GLY GLU GLY THR ARG VAL VAL SER SER ASP ALA LEU ALA SEQRES 6 B 644 ALA ARG ALA GLN SER LEU ALA SER GLU LEU THR LYS PHE SEQRES 7 B 644 THR ASP VAL ASP ILE LYS ALA ALA THR GLY SER ALA THR SEQRES 8 B 644 GLY LYS ASP ILE SER LEU THR LEU ASP ALA SER LYS LYS SEQRES 9 B 644 ALA GLU LEU GLY ASP GLU GLY PHE LYS LEU ASN ILE GLY SEQRES 10 B 644 SER LYS GLY LEU GLU VAL ILE GLY ALA THR ASP ILE GLY SEQRES 11 B 644 VAL PHE TYR GLY THR ARG SER VAL SER GLN MET LEU ARG SEQRES 12 B 644 GLN GLY GLN LEU THR LEU PRO ALA GLY THR VAL ALA THR SEQRES 13 B 644 LYS PRO LYS TYR LYS GLU ARG GLY ALA THR LEU CYS ALA SEQRES 14 B 644 CYS GLN ILE ASN ILE SER THR ASP TRP ILE ASP ARG PHE SEQRES 15 B 644 LEU SER ASP MET ALA ASP LEU ARG LEU ASN TYR VAL LEU SEQRES 16 B 644 LEU GLU MET LYS LEU LYS PRO GLU GLU ASP ASN THR LYS SEQRES 17 B 644 LYS ALA ALA THR TRP SER TYR TYR THR ARG ASP ASP VAL SEQRES 18 B 644 LYS LYS PHE VAL LYS LYS ALA ASN ASN TYR GLY ILE ASP SEQRES 19 B 644 VAL ILE PRO GLU ILE ASN SER PRO GLY HIS MET ASN VAL SEQRES 20 B 644 TRP LEU GLU ASN TYR PRO GLU TYR GLN LEU ALA ASP ASN SEQRES 21 B 644 SER GLY ARG LYS ASP PRO ASN LYS LEU ASP ILE SER ASN SEQRES 22 B 644 PRO GLU ALA VAL LYS PHE TYR LYS THR LEU ILE ASP GLU SEQRES 23 B 644 TYR ASP GLY VAL PHE THR THR LYS TYR TRP HIS MET GLY SEQRES 24 B 644 ALA ASP GLU TYR MET ILE GLY THR SER PHE ASP ASN TYR SEQRES 25 B 644 SER LYS LEU LYS THR PHE ALA GLU LYS GLN TYR GLY ALA SEQRES 26 B 644 GLY ALA THR PRO ASN ASP ALA PHE THR GLY PHE ILE ASN SEQRES 27 B 644 ASP ILE ASP LYS TYR VAL LYS ALA LYS GLY LYS GLN LEU SEQRES 28 B 644 ARG ILE TRP ASN ASP GLY ILE VAL ASN THR LYS ASN VAL SEQRES 29 B 644 SER LEU ASN LYS ASP ILE VAL ILE GLU TYR TRP TYR GLY SEQRES 30 B 644 ALA GLY ARG LYS PRO GLN GLU LEU VAL GLN ASP GLY TYR SEQRES 31 B 644 THR LEU MET ASN ALA THR GLN ALA LEU TYR TRP SER ARG SEQRES 32 B 644 SER ALA GLN VAL TYR LYS VAL ASN ALA ALA ARG LEU TYR SEQRES 33 B 644 ASN ASN ASN TRP ASN VAL GLY THR PHE ASP GLY GLY ARG SEQRES 34 B 644 GLN ILE ASP LYS ASN TYR ASP LYS LEU THR GLY ALA LYS SEQRES 35 B 644 VAL SER ILE TRP PRO ASP SER SER TYR PHE GLN THR GLU SEQRES 36 B 644 ASN GLU VAL GLU LYS GLU ILE PHE ASP GLY MET ARG PHE SEQRES 37 B 644 ILE SER GLN MET THR TRP SER ASP SER ARG PRO TRP ALA SEQRES 38 B 644 THR TRP ASN ASP MET LYS ALA ASP ILE ASP LYS ILE GLY SEQRES 39 B 644 TYR PRO LEU ASP ILE ARG GLU TYR ASP TYR THR PRO VAL SEQRES 40 B 644 ASP ALA GLY ILE TYR ASP ILE PRO GLN LEU LYS SER ILE SEQRES 41 B 644 SER LYS GLY PRO TRP GLU LEU ILE THR THR PRO ASP GLY SEQRES 42 B 644 TYR TYR GLN MET LYS ASP THR VAL SER GLY LYS CYS LEU SEQRES 43 B 644 ALA LEU PHE THR GLY SER LYS HIS LEU ASP VAL VAL THR SEQRES 44 B 644 GLN VAL GLY ALA ARG PRO GLU LEU ARG ASN CYS ALA ASP SEQRES 45 B 644 VAL SER VAL GLY GLN ASP GLN ARG ASN THR ALA ASN GLU SEQRES 46 B 644 ARG ASN THR GLN LYS TRP GLN ILE ARG ALA ASP LYS ASP SEQRES 47 B 644 GLY LYS TYR THR ILE SER PRO ALA LEU THR GLN GLN ARG SEQRES 48 B 644 LEU ALA ILE ALA THR GLY ASN GLU GLN ASN ILE ASP LEU SEQRES 49 B 644 GLU THR HIS ARG PRO ALA ALA GLY THR VAL ALA GLN PHE SEQRES 50 B 644 PRO ALA ASP LEU VAL SER ASP HET NAG C 1 15 HET GAL C 2 11 HET NAG D 1 15 HET GAL D 2 11 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 B 703 5 HET SO4 B 704 5 HET SO4 B 705 5 HET SO4 B 706 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 SO4 8(O4 S 2-) FORMUL 13 HOH *1327(H2 O) HELIX 1 1 LEU A 83 ASP A 99 1 17 HELIX 2 2 LYS A 122 GLY A 127 1 6 HELIX 3 3 THR A 146 ARG A 162 1 17 HELIX 4 4 SER A 194 LEU A 208 1 15 HELIX 5 5 THR A 226 ALA A 230 5 5 HELIX 6 6 THR A 236 TYR A 250 1 15 HELIX 7 7 MET A 264 GLU A 269 1 6 HELIX 8 8 TYR A 271 GLU A 273 5 3 HELIX 9 9 ASN A 292 GLY A 308 1 17 HELIX 10 10 SER A 327 ASN A 330 5 4 HELIX 11 11 TYR A 331 GLY A 343 1 13 HELIX 12 12 THR A 347 ALA A 365 1 19 HELIX 13 13 LYS A 400 ASP A 407 1 8 HELIX 14 14 THR A 415 ALA A 417 5 3 HELIX 15 15 ASN A 430 ASN A 437 1 8 HELIX 16 16 SER A 468 GLN A 472 5 5 HELIX 17 17 THR A 473 SER A 494 1 22 HELIX 18 18 THR A 501 GLY A 513 1 13 HELIX 19 19 PRO A 515 TYR A 521 1 7 HELIX 20 20 ILE A 533 LYS A 537 5 5 HELIX 21 21 GLN A 598 ASN A 600 5 3 HELIX 22 22 THR A 601 THR A 607 1 7 HELIX 23 23 ASN A 640 HIS A 646 1 7 HELIX 24 24 PRO A 657 VAL A 661 5 5 HELIX 25 25 LEU B 83 ASP B 99 1 17 HELIX 26 26 LYS B 122 GLY B 127 1 6 HELIX 27 27 THR B 146 ARG B 162 1 17 HELIX 28 28 SER B 194 LEU B 208 1 15 HELIX 29 29 THR B 226 ALA B 230 5 5 HELIX 30 30 THR B 236 TYR B 250 1 15 HELIX 31 31 MET B 264 GLU B 269 1 6 HELIX 32 32 TYR B 271 GLU B 273 5 3 HELIX 33 33 ASN B 292 ASP B 307 1 16 HELIX 34 34 SER B 327 ASN B 330 5 4 HELIX 35 35 TYR B 331 GLY B 343 1 13 HELIX 36 36 THR B 347 ALA B 365 1 19 HELIX 37 37 LYS B 400 ASP B 407 1 8 HELIX 38 38 THR B 415 ALA B 417 5 3 HELIX 39 39 ASN B 430 ASN B 437 1 8 HELIX 40 40 SER B 468 GLN B 472 5 5 HELIX 41 41 THR B 473 SER B 494 1 22 HELIX 42 42 THR B 501 GLY B 513 1 13 HELIX 43 43 PRO B 515 GLU B 520 1 6 HELIX 44 44 ILE B 533 LYS B 537 5 5 HELIX 45 45 GLN B 598 ASN B 600 5 3 HELIX 46 46 THR B 601 GLN B 608 1 8 HELIX 47 47 ASN B 640 HIS B 646 1 7 HELIX 48 48 PRO B 657 VAL B 661 5 5 SHEET 1 A 4 VAL A 34 PRO A 35 0 SHEET 2 A 4 GLY B 529 ASP B 532 -1 O ASP B 532 N VAL A 34 SHEET 3 A 4 TRP B 544 THR B 548 -1 O LEU B 546 N GLY B 529 SHEET 4 A 4 TYR B 554 ASP B 558 -1 O LYS B 557 N GLU B 545 SHEET 1 B 8 GLY A 41 SER A 43 0 SHEET 2 B 8 THR A 63 THR A 70 -1 O THR A 70 N GLY A 41 SHEET 3 B 8 THR A 167 THR A 175 -1 O LEU A 168 N TRP A 69 SHEET 4 B 8 PHE A 131 GLY A 136 -1 N ILE A 135 O GLY A 171 SHEET 5 B 8 GLY A 139 GLY A 144 -1 O GLU A 141 N ASN A 134 SHEET 6 B 8 ILE A 114 LEU A 118 1 N SER A 115 O VAL A 142 SHEET 7 B 8 ARG A 76 SER A 79 1 N VAL A 78 O ILE A 114 SHEET 8 B 8 LYS A 103 ALA A 105 1 O ALA A 105 N VAL A 77 SHEET 1 C10 TYR A 419 SER A 421 0 SHEET 2 C10 LEU A 457 TRP A 465 1 O TRP A 465 N TRP A 420 SHEET 3 C10 LEU A 411 ASN A 413 1 N LEU A 411 O THR A 458 SHEET 4 C10 VAL A 390 TYR A 393 1 N TYR A 393 O MET A 412 SHEET 5 C10 GLN A 369 TRP A 373 1 N ILE A 372 O GLU A 392 SHEET 6 C10 TYR A 314 GLY A 318 1 N GLY A 318 O TRP A 373 SHEET 7 C10 ASP A 253 SER A 260 1 N SER A 260 O MET A 317 SHEET 8 C10 TYR A 212 MET A 217 1 N VAL A 213 O ILE A 255 SHEET 9 C10 GLU A 181 ALA A 188 1 N LEU A 186 O LEU A 214 SHEET 10 C10 LEU A 457 TRP A 465 1 O ILE A 464 N THR A 185 SHEET 1 D 2 GLN A 275 ALA A 277 0 SHEET 2 D 2 LYS A 283 LEU A 288 -1 O LYS A 287 N LEU A 276 SHEET 1 E 2 THR A 443 PHE A 444 0 SHEET 2 E 2 ARG A 448 GLN A 449 -1 O ARG A 448 N PHE A 444 SHEET 1 F 4 TYR A 554 ASP A 558 0 SHEET 2 F 4 TRP A 544 THR A 548 -1 N GLU A 545 O LYS A 557 SHEET 3 F 4 GLY A 529 ASP A 532 -1 N GLY A 529 O LEU A 546 SHEET 4 F 4 VAL B 34 PRO B 35 -1 O VAL B 34 N ASP A 532 SHEET 1 G 2 CYS A 564 ALA A 566 0 SHEET 2 G 2 GLU A 585 ARG A 587 -1 O GLU A 585 N ALA A 566 SHEET 1 H 2 LYS A 572 HIS A 573 0 SHEET 2 H 2 VAL A 576 VAL A 577 -1 O VAL A 576 N HIS A 573 SHEET 1 I 2 TRP A 610 ALA A 614 0 SHEET 2 I 2 TYR A 620 PRO A 624 -1 O SER A 623 N GLN A 611 SHEET 1 J 2 ARG A 630 ILE A 633 0 SHEET 2 J 2 VAL A 653 PHE A 656 -1 O PHE A 656 N ARG A 630 SHEET 1 K 8 GLY B 41 SER B 43 0 SHEET 2 K 8 THR B 63 THR B 70 -1 O THR B 70 N GLY B 41 SHEET 3 K 8 THR B 167 THR B 175 -1 O LEU B 168 N TRP B 69 SHEET 4 K 8 PHE B 131 GLY B 136 -1 N PHE B 131 O THR B 175 SHEET 5 K 8 GLY B 139 GLY B 144 -1 O GLU B 141 N ASN B 134 SHEET 6 K 8 ILE B 114 LEU B 118 1 N SER B 115 O VAL B 142 SHEET 7 K 8 ARG B 76 SER B 79 1 N VAL B 78 O ILE B 114 SHEET 8 K 8 LYS B 103 THR B 106 1 O LYS B 103 N VAL B 77 SHEET 1 L10 TYR B 419 SER B 421 0 SHEET 2 L10 LEU B 457 TRP B 465 1 O TRP B 465 N TRP B 420 SHEET 3 L10 LEU B 411 ASN B 413 1 N LEU B 411 O THR B 458 SHEET 4 L10 VAL B 390 TYR B 393 1 N TYR B 393 O MET B 412 SHEET 5 L10 GLN B 369 TRP B 373 1 N ILE B 372 O GLU B 392 SHEET 6 L10 TYR B 314 GLY B 318 1 N GLY B 318 O TRP B 373 SHEET 7 L10 ASP B 253 SER B 260 1 N SER B 260 O MET B 317 SHEET 8 L10 TYR B 212 MET B 217 1 N LEU B 215 O ILE B 255 SHEET 9 L10 GLU B 181 ALA B 188 1 N LEU B 186 O LEU B 214 SHEET 10 L10 LEU B 457 TRP B 465 1 O THR B 458 N GLU B 181 SHEET 1 M 2 GLN B 275 ALA B 277 0 SHEET 2 M 2 LYS B 283 LEU B 288 -1 O LYS B 287 N LEU B 276 SHEET 1 N 2 THR B 443 PHE B 444 0 SHEET 2 N 2 ARG B 448 GLN B 449 -1 O ARG B 448 N PHE B 444 SHEET 1 O 2 CYS B 564 ALA B 566 0 SHEET 2 O 2 GLU B 585 ARG B 587 -1 O ARG B 587 N CYS B 564 SHEET 1 P 2 LYS B 572 HIS B 573 0 SHEET 2 P 2 VAL B 576 VAL B 577 -1 O VAL B 576 N HIS B 573 SHEET 1 Q 2 TRP B 610 ALA B 614 0 SHEET 2 Q 2 TYR B 620 PRO B 624 -1 O SER B 623 N GLN B 611 SHEET 1 R 2 ARG B 630 ILE B 633 0 SHEET 2 R 2 VAL B 653 PHE B 656 -1 O PHE B 656 N ARG B 630 SSBOND 1 CYS A 564 CYS A 589 1555 1555 2.12 SSBOND 2 CYS B 564 CYS B 589 1555 1555 2.10 LINK O3 NAG C 1 C1 GAL C 2 1555 1555 1.36 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.41 CISPEP 1 VAL A 56 PRO A 57 0 -6.22 CISPEP 2 TRP A 232 SER A 233 0 3.99 CISPEP 3 SER A 260 PRO A 261 0 -2.07 CISPEP 4 GLY A 398 ARG A 399 0 3.15 CISPEP 5 GLY A 542 PRO A 543 0 10.18 CISPEP 6 LYS A 616 ASP A 617 0 -4.69 CISPEP 7 VAL B 56 PRO B 57 0 -2.65 CISPEP 8 GLY B 107 SER B 108 0 17.37 CISPEP 9 TRP B 232 SER B 233 0 0.85 CISPEP 10 SER B 260 PRO B 261 0 6.33 CISPEP 11 GLY B 542 PRO B 543 0 9.36 CRYST1 116.815 131.033 104.409 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009578 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.990574 -0.136679 0.009065 115.74120 1 MTRIX2 2 -0.136688 0.990614 -0.000389 7.92460 1 MTRIX3 2 -0.008926 -0.001624 -0.999959 55.15983 1