HEADER OXIDOREDUCTASE 10-SEP-12 4H16 TITLE CRYSTAL STRUCTURE OF A SHORT CHAIN ALCOHOL DEHYDROGENASE-RELATED TITLE 2 DEHYDROGENASE (TARGET ID NYSGRC-011812) FROM SINORHIZOBIUM MELILOTI TITLE 3 1021 IN SPACE GROUP P6422 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN ALCOHOL DEHYDROGENASE-RELATED DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 266834; SOURCE 4 STRAIN: 1021; SOURCE 5 GENE: RA0888, SMA1629; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NYSGRC, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GHOSH,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 2 (NYSGRC) REVDAT 2 30-OCT-24 4H16 1 REMARK SEQADV LINK REVDAT 1 19-SEP-12 4H16 0 JRNL AUTH A.GHOSH,R.BHOSHLE,R.TORO,A.GIZZI,B.HILLERICH,R.SEIDEL, JRNL AUTH 2 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM JRNL TITL CRYSTAL STRUCTURE OF A SHORT CHAIN ALCOHOL JRNL TITL 2 DEHYDROGENASE-RELATED DEHYDROGENASE (TARGET ID JRNL TITL 3 NYSGRC-011812) FROM SINORHIZOBIUM MELILOTI 1021 IN SPACE JRNL TITL 4 GROUP P6422 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 64983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3007 - 5.6826 0.97 2641 122 0.2115 0.1973 REMARK 3 2 5.6826 - 4.5129 0.98 2653 136 0.1554 0.1637 REMARK 3 3 4.5129 - 3.9432 0.97 2612 138 0.1328 0.1620 REMARK 3 4 3.9432 - 3.5830 0.99 2662 163 0.1243 0.1252 REMARK 3 5 3.5830 - 3.3263 0.99 2680 148 0.1412 0.1387 REMARK 3 6 3.3263 - 3.1303 1.00 2666 142 0.1436 0.1781 REMARK 3 7 3.1303 - 2.9736 1.00 2709 151 0.1509 0.1557 REMARK 3 8 2.9736 - 2.8442 1.00 2693 138 0.1475 0.1850 REMARK 3 9 2.8442 - 2.7348 1.00 2679 165 0.1482 0.1791 REMARK 3 10 2.7348 - 2.6404 1.00 2696 131 0.1454 0.1619 REMARK 3 11 2.6404 - 2.5579 1.00 2712 142 0.1558 0.2368 REMARK 3 12 2.5579 - 2.4848 1.00 2670 137 0.1600 0.2000 REMARK 3 13 2.4848 - 2.4194 1.00 2701 146 0.1642 0.1703 REMARK 3 14 2.4194 - 2.3604 1.00 2715 121 0.1689 0.2124 REMARK 3 15 2.3604 - 2.3067 1.00 2657 149 0.1673 0.2262 REMARK 3 16 2.3067 - 2.2576 1.00 2715 145 0.1832 0.2020 REMARK 3 17 2.2576 - 2.2125 1.00 2707 149 0.2000 0.2413 REMARK 3 18 2.2125 - 2.1707 1.00 2692 140 0.1968 0.1826 REMARK 3 19 2.1707 - 2.1320 1.00 2709 150 0.2094 0.2103 REMARK 3 20 2.1320 - 2.0958 1.00 2662 136 0.2147 0.2347 REMARK 3 21 2.0958 - 2.0620 1.00 2710 135 0.2249 0.2641 REMARK 3 22 2.0620 - 2.0303 1.00 2694 145 0.2595 0.2981 REMARK 3 23 2.0303 - 2.0005 1.00 2682 137 0.2809 0.3288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1999 REMARK 3 ANGLE : 1.078 2706 REMARK 3 CHIRALITY : 0.068 319 REMARK 3 PLANARITY : 0.005 349 REMARK 3 DIHEDRAL : 17.923 764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3343 -45.2539 8.2559 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.5089 REMARK 3 T33: 0.1456 T12: -0.0242 REMARK 3 T13: -0.0491 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 3.1261 L22: 1.0310 REMARK 3 L33: 1.1902 L12: 0.4780 REMARK 3 L13: -0.0932 L23: -0.3862 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.8114 S13: 0.1896 REMARK 3 S21: 0.3295 S22: -0.1517 S23: -0.0608 REMARK 3 S31: -0.1217 S32: 0.1025 S33: 0.0965 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0381 -46.9968 -9.6889 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.1748 REMARK 3 T33: 0.1407 T12: 0.0154 REMARK 3 T13: -0.0160 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.3172 L22: 1.3290 REMARK 3 L33: 1.2102 L12: -0.0440 REMARK 3 L13: 0.0911 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.3238 S13: -0.0112 REMARK 3 S21: 0.0129 S22: -0.0444 S23: -0.1074 REMARK 3 S31: -0.1299 S32: 0.2729 S33: 0.0949 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9001 -42.0778 -2.7225 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.1999 REMARK 3 T33: 0.3350 T12: 0.0634 REMARK 3 T13: -0.0594 T23: -0.1529 REMARK 3 L TENSOR REMARK 3 L11: 2.7346 L22: 0.6341 REMARK 3 L33: 3.3904 L12: -0.0674 REMARK 3 L13: 0.0553 L23: 0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: -0.6078 S13: 0.8028 REMARK 3 S21: -0.0013 S22: -0.1708 S23: -0.0765 REMARK 3 S31: -1.1297 S32: 0.0111 S33: -0.0345 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB CODE: REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE 0.1 M REMARK 280 HEPES:NAOH PH 7.5, AND 30% (V/V) PPG P400, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.50000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.50000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.50000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X,-Y-1,Z; X,X-Y- REMARK 300 1,-Z-1/3 AND -X,-X+Y,-Z-1/3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -111.89048 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -34.50000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 64.60000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -111.89048 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -34.50000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 MSE A 0 REMARK 465 MSE A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 136 -118.46 -94.22 REMARK 500 SER A 137 142.82 174.84 REMARK 500 LEU A 196 63.11 -63.69 REMARK 500 ALA A 197 -17.61 -171.80 REMARK 500 THR A 202 153.82 64.37 REMARK 500 ASP A 203 -12.71 137.13 REMARK 500 LEU A 204 -57.67 65.31 REMARK 500 ASP A 252 16.16 -150.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 96 O REMARK 620 2 ASP A 101 OD2 93.8 REMARK 620 3 HOH A 447 O 170.3 80.0 REMARK 620 4 HOH A 520 O 89.3 78.1 96.7 REMARK 620 5 HOH A 549 O 86.9 98.7 86.7 174.9 REMARK 620 6 HOH A 555 O 91.2 161.0 97.1 83.6 99.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H15 RELATED DB: PDB REMARK 900 RELATED ID: NYSGRC-011812 RELATED DB: TARGETTRACK DBREF 4H16 A 1 259 UNP Q92YJ2 Q92YJ2_RHIME 1 259 SEQADV 4H16 SER A -1 UNP Q92YJ2 EXPRESSION TAG SEQADV 4H16 MSE A 0 UNP Q92YJ2 EXPRESSION TAG SEQRES 1 A 261 SER MSE MSE ILE GLU PHE LEU ASN LEU ARG GLY LYS ARG SEQRES 2 A 261 ALA LEU ILE THR ALA GLY THR LYS GLY ALA GLY ALA ALA SEQRES 3 A 261 THR VAL SER LEU PHE LEU GLU LEU GLY ALA GLN VAL LEU SEQRES 4 A 261 THR THR ALA ARG ALA ARG PRO GLU GLY LEU PRO GLU GLU SEQRES 5 A 261 LEU PHE VAL GLU ALA ASP LEU THR THR LYS GLU GLY CYS SEQRES 6 A 261 ALA ILE VAL ALA GLU ALA THR ARG GLN ARG LEU GLY GLY SEQRES 7 A 261 VAL ASP VAL ILE VAL HIS MSE LEU GLY GLY SER SER ALA SEQRES 8 A 261 ALA GLY GLY GLY PHE SER ALA LEU SER ASP ASP ASP TRP SEQRES 9 A 261 TYR ASN GLU LEU SER LEU ASN LEU PHE ALA ALA VAL ARG SEQRES 10 A 261 LEU ASP ARG GLN LEU VAL PRO ASP MSE VAL ALA ARG GLY SEQRES 11 A 261 SER GLY VAL VAL VAL HIS VAL THR SER ILE GLN ARG VAL SEQRES 12 A 261 LEU PRO LEU PRO GLU SER THR THR ALA TYR ALA ALA ALA SEQRES 13 A 261 LYS ALA ALA LEU SER THR TYR SER LYS ALA MSE SER LYS SEQRES 14 A 261 GLU VAL SER PRO LYS GLY VAL ARG VAL VAL ARG VAL SER SEQRES 15 A 261 PRO GLY TRP ILE GLU THR GLU ALA SER VAL ARG LEU ALA SEQRES 16 A 261 GLU ARG LEU ALA LYS GLN ALA GLY THR ASP LEU GLU GLY SEQRES 17 A 261 GLY LYS LYS ILE ILE MSE ASP GLY LEU GLY GLY ILE PRO SEQRES 18 A 261 LEU GLY ARG PRO ALA LYS PRO GLU GLU VAL ALA ASN LEU SEQRES 19 A 261 ILE ALA PHE LEU ALA SER ASP ARG ALA ALA SER ILE THR SEQRES 20 A 261 GLY ALA GLU TYR THR ILE ASP GLY GLY THR VAL PRO THR SEQRES 21 A 261 ALA MODRES 4H16 MSE A 83 MET SELENOMETHIONINE MODRES 4H16 MSE A 124 MET SELENOMETHIONINE MODRES 4H16 MSE A 165 MET SELENOMETHIONINE MODRES 4H16 MSE A 212 MET SELENOMETHIONINE HET MSE A 83 13 HET MSE A 124 8 HET MSE A 165 8 HET MSE A 212 8 HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET MG A 304 1 HET P6G A 305 19 HET P6G A 306 19 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CL 3(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 P6G 2(C12 H26 O7) FORMUL 8 HOH *235(H2 O) HELIX 1 1 LYS A 19 LEU A 32 1 14 HELIX 2 2 PRO A 48 GLU A 50 5 3 HELIX 3 3 THR A 59 GLY A 75 1 17 HELIX 4 4 GLY A 93 LEU A 97 5 5 HELIX 5 5 SER A 98 LEU A 110 1 13 HELIX 6 6 LEU A 110 GLY A 128 1 19 HELIX 7 7 SER A 137 VAL A 141 5 5 HELIX 8 8 LEU A 144 SER A 170 1 27 HELIX 9 9 THR A 186 LEU A 196 1 11 HELIX 10 10 LEU A 204 LEU A 215 1 12 HELIX 11 11 LYS A 225 SER A 238 1 14 HELIX 12 12 ASP A 239 ALA A 242 5 4 SHEET 1 A 7 PHE A 52 GLU A 54 0 SHEET 2 A 7 GLN A 35 ALA A 40 1 N THR A 38 O VAL A 53 SHEET 3 A 7 ARG A 11 ILE A 14 1 N ALA A 12 O GLN A 35 SHEET 4 A 7 VAL A 79 HIS A 82 1 O VAL A 81 N LEU A 13 SHEET 5 A 7 GLY A 130 VAL A 135 1 O VAL A 133 N ILE A 80 SHEET 6 A 7 VAL A 174 PRO A 181 1 O VAL A 177 N HIS A 134 SHEET 7 A 7 GLU A 248 ILE A 251 1 O TYR A 249 N ARG A 178 LINK C HIS A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N LEU A 84 1555 1555 1.33 LINK C ASP A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N VAL A 125 1555 1555 1.33 LINK C ALA A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N SER A 166 1555 1555 1.33 LINK C ILE A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N ASP A 213 1555 1555 1.33 LINK O ALA A 96 MG MG A 304 1555 1555 2.37 LINK OD2 ASP A 101 MG MG A 304 1555 1555 2.40 LINK MG MG A 304 O HOH A 447 1555 1555 2.31 LINK MG MG A 304 O HOH A 520 1555 1555 2.39 LINK MG MG A 304 O HOH A 549 1555 1555 2.18 LINK MG MG A 304 O HOH A 555 1555 1555 2.50 SITE 1 AC1 3 ILE A 2 GLU A 3 ARG A 8 SITE 1 AC2 3 GLY A 20 GLU A 187 HOH A 591 SITE 1 AC3 2 LYS A 163 SER A 166 SITE 1 AC4 6 ALA A 96 ASP A 101 HOH A 447 HOH A 520 SITE 2 AC4 6 HOH A 549 HOH A 555 SITE 1 AC5 6 GLY A 85 GLN A 139 TYR A 151 TRP A 183 SITE 2 AC5 6 HOH A 444 HOH A 461 SITE 1 AC6 6 ASP A 99 ASP A 100 TYR A 103 PHE A 111 SITE 2 AC6 6 ARG A 115 HOH A 509 CRYST1 129.200 129.200 103.500 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007740 0.004469 0.000000 0.00000 SCALE2 0.000000 0.008938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009663 0.00000